Wall clock time and date at job start Wed Apr 1 2020 05:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47184 * 2 1 4 4 C 1.52998 * 109.47188 * 120.00215 * 2 1 3 5 5 H 1.08997 * 109.47057 * 293.44168 * 4 2 1 6 6 N 1.46502 * 109.47332 * 53.44033 * 4 2 1 7 7 C 1.34771 * 119.99919 * 263.25205 * 6 4 2 8 8 O 1.21576 * 120.00491 * 0.02562 * 7 6 4 9 9 N 1.34775 * 120.00082 * 179.97438 * 7 6 4 10 10 C 1.39240 * 120.00561 * 185.34187 * 9 7 6 11 11 C 1.39686 * 119.58267 * 175.14326 * 10 9 7 12 12 C 1.38645 * 119.49863 * 180.02562 * 11 10 9 13 13 C 1.38352 * 118.67189 * 359.72430 * 12 11 10 14 14 C 1.40574 * 119.12756 * 0.51551 * 13 12 11 15 15 C 1.41336 * 119.78626 * 179.74763 * 14 13 12 16 16 H 1.08001 * 119.99629 * 7.96555 * 15 14 13 17 17 C 1.40022 * 120.00181 * 187.96317 * 15 14 13 18 18 N 1.30741 * 120.00026 * 7.65300 * 17 15 14 19 19 Si 1.86804 * 120.00090 * 187.65797 * 17 15 14 20 20 H 1.48494 * 109.47035 * 265.00678 * 19 17 15 21 21 H 1.48500 * 109.47187 * 25.00456 * 19 17 15 22 22 H 1.48498 * 109.47176 * 145.00575 * 19 17 15 23 23 N 1.31906 * 119.57295 * 355.12264 * 10 9 7 24 24 C 1.53004 * 109.47211 * 173.44187 * 4 2 1 25 25 C 1.52993 * 112.84642 * 293.40324 * 24 4 2 26 26 O 1.42905 * 109.46913 * 185.11258 * 25 24 4 27 27 C 1.53777 * 113.61298 * 162.09945 * 24 4 2 28 28 C 1.53780 * 87.08049 * 220.01944 * 27 24 4 29 29 C 1.53778 * 113.61178 * 64.59886 * 24 4 2 30 30 H 1.08999 * 109.47230 * 299.99642 * 1 2 3 31 31 H 1.09003 * 109.47370 * 60.00320 * 1 2 3 32 32 H 1.09005 * 109.47254 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47184 * 240.00003 * 2 1 3 34 34 H 1.09000 * 109.47333 * 191.39067 * 3 2 1 35 35 H 1.09005 * 109.46995 * 311.38829 * 3 2 1 36 36 H 1.09001 * 109.47254 * 71.38986 * 3 2 1 37 37 H 0.97003 * 119.99795 * 83.25314 * 6 4 2 38 38 H 0.97008 * 120.00222 * 5.33865 * 9 7 6 39 39 H 1.08002 * 120.24499 * 359.97438 * 11 10 9 40 40 H 1.07998 * 120.66210 * 179.97438 * 12 11 10 41 41 H 1.07995 * 120.43616 * 180.28797 * 13 12 11 42 42 H 0.97004 * 120.00214 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.47545 * 305.11297 * 25 24 4 44 44 H 1.09003 * 109.47482 * 65.11634 * 25 24 4 45 45 H 0.96705 * 113.99686 * 180.02562 * 26 25 24 46 46 H 1.09007 * 113.61679 * 334.56300 * 27 24 4 47 47 H 1.08995 * 113.61997 * 105.46874 * 27 24 4 48 48 H 1.08999 * 113.61508 * 270.88367 * 28 27 24 49 49 H 1.08999 * 113.61974 * 139.97802 * 28 27 24 50 50 H 1.08995 * 113.61353 * 254.52615 * 29 24 4 51 51 H 1.08994 * 113.61620 * 25.35182 * 29 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7756 -0.1442 2.1353 6 7 1.4271 -2.0495 1.3307 7 6 0.3362 -2.2422 2.0983 8 8 -0.1396 -1.3139 2.7227 9 7 -0.2280 -3.4640 2.1729 10 6 -1.4173 -3.6400 2.8752 11 6 -2.0478 -4.8864 2.8622 12 6 -3.2323 -5.0597 3.5617 13 6 -3.7535 -3.9856 4.2608 14 6 -3.0743 -2.7551 4.2309 15 6 -3.5971 -1.6472 4.9357 16 1 -4.4410 -1.7774 5.5971 17 6 -3.0211 -0.3810 4.7766 18 7 -2.1002 -0.1912 3.8681 19 14 -3.5681 1.0372 5.8625 20 1 -4.6201 1.8183 5.1639 21 1 -4.1122 0.5034 7.1370 22 1 -2.4069 1.9170 6.1500 23 7 -1.9339 -2.6277 3.5447 24 6 3.5611 -0.8655 1.1695 25 6 4.0112 -1.7980 0.0432 26 8 5.4278 -1.9744 0.1083 27 6 4.2229 -1.1685 2.5242 28 6 5.3446 -0.2047 2.1028 29 6 4.3093 0.4778 1.1932 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1109 1.4492 -0.2030 35 1 1.5204 2.0115 -0.7710 36 1 1.8519 1.8944 0.9739 37 1 1.8065 -2.7901 0.8322 38 1 0.1945 -4.2208 1.7372 39 1 -1.6163 -5.7086 2.3106 40 1 -3.7358 -6.0151 3.5641 41 1 -4.6719 -4.0900 4.8192 42 1 -1.7009 0.6860 3.7581 43 1 3.5193 -2.7645 0.1532 44 1 3.7433 -1.3614 -0.9189 45 1 5.7838 -2.5552 -0.5780 46 1 3.6455 -0.8189 3.3801 47 1 4.5517 -2.2025 2.6280 48 1 6.1540 -0.6889 1.5564 49 1 5.7009 0.4316 2.9129 50 1 4.7079 0.7727 0.2226 51 1 3.7550 1.2777 1.6840 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000881144167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:26 Heat of formation + Delta-G solvation = 2.372859 kcal Electronic energy + Delta-G solvation = -32656.874170 eV Core-core repulsion = 28558.130285 eV Total energy + Delta-G solvation = -4098.743885 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -40.70949 -39.16615 -37.66362 -36.23303 -35.32423 -33.94319 -32.98875 -32.72286 -30.25805 -29.27638 -28.44102 -27.16814 -25.89123 -25.32306 -25.09594 -22.72786 -21.93280 -21.15898 -19.85834 -19.59322 -18.65692 -18.16528 -17.67368 -16.83656 -16.30509 -15.69429 -15.16626 -15.02339 -14.94014 -14.54026 -14.53564 -14.36494 -13.65505 -13.49782 -13.47148 -13.02940 -12.81775 -12.62358 -12.39265 -12.33803 -12.01032 -11.90517 -11.87104 -11.70879 -11.45170 -11.39748 -11.14749 -10.90688 -10.74484 -10.61686 -10.54257 -10.43658 -10.40799 -10.18041 -9.99856 -9.92952 -9.82840 -9.55242 -9.02803 -8.95851 -8.32506 -7.92205 -7.15855 -6.89305 -6.15062 -4.32342 2.88339 3.16565 3.20577 3.23184 3.28826 3.30930 3.96830 4.10694 4.25710 4.40272 4.61551 4.70753 4.79883 4.94671 4.98089 5.12243 5.14693 5.16539 5.34454 5.46618 5.48522 5.60392 5.79035 5.83788 5.87824 5.92606 5.99649 6.06776 6.09768 6.12232 6.14869 6.16750 6.21795 6.34139 6.38910 6.51492 6.53250 6.58638 6.66653 6.84340 6.86955 6.89584 7.09179 7.28770 7.40790 7.42068 7.66437 7.79761 7.85934 8.21792 8.35553 8.71735 8.85899 9.10480 9.65669 10.30734 10.52432 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.003716 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.591858 B = 7533.498798 C = 8806.126050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.103 4.103 3 C -0.155 4.155 4 C 0.191 3.809 5 H 0.101 0.899 6 N -0.753 5.753 7 C 0.668 3.332 8 O -0.463 6.463 9 N -0.675 5.675 10 C 0.388 3.612 11 C -0.359 4.359 12 C -0.035 4.035 13 C -0.308 4.308 14 C 0.275 3.725 15 C -0.429 4.429 16 H 0.081 0.919 17 C 0.062 3.938 18 N -0.653 5.653 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.263 1.263 22 H -0.278 1.278 23 N -0.472 5.472 24 C -0.091 4.091 25 C 0.100 3.900 26 O -0.563 6.563 27 C -0.118 4.118 28 C -0.139 4.139 29 C -0.119 4.119 30 H 0.069 0.931 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.049 0.951 36 H 0.057 0.943 37 H 0.380 0.620 38 H 0.393 0.607 39 H 0.089 0.911 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.272 0.728 43 H 0.046 0.954 44 H 0.050 0.950 45 H 0.372 0.628 46 H 0.078 0.922 47 H 0.064 0.936 48 H 0.096 0.904 49 H 0.056 0.944 50 H 0.067 0.933 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.514 0.107 -10.253 17.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.123 4.123 3 C -0.212 4.212 4 C 0.085 3.915 5 H 0.119 0.881 6 N -0.412 5.412 7 C 0.366 3.634 8 O -0.327 6.327 9 N -0.323 5.323 10 C 0.148 3.852 11 C -0.385 4.385 12 C -0.060 4.060 13 C -0.332 4.332 14 C 0.150 3.850 15 C -0.459 4.459 16 H 0.099 0.901 17 C -0.167 4.167 18 N -0.271 5.271 19 Si 0.717 3.283 20 H -0.199 1.199 21 H -0.187 1.187 22 H -0.203 1.203 23 N -0.190 5.190 24 C -0.092 4.092 25 C 0.023 3.977 26 O -0.369 6.369 27 C -0.156 4.156 28 C -0.177 4.177 29 C -0.156 4.156 30 H 0.088 0.912 31 H 0.058 0.942 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.069 0.931 36 H 0.076 0.924 37 H 0.212 0.788 38 H 0.225 0.775 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.084 0.916 43 H 0.064 0.936 44 H 0.068 0.932 45 H 0.219 0.781 46 H 0.097 0.903 47 H 0.083 0.917 48 H 0.114 0.886 49 H 0.074 0.926 50 H 0.086 0.914 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 14.519 2.460 -9.215 17.372 hybrid contribution -0.311 -1.553 -0.640 1.708 sum 14.209 0.907 -9.855 17.316 Atomic orbital electron populations 1.21738 0.93885 1.02239 1.01594 1.21506 0.97055 0.95969 0.97727 1.22163 1.01308 0.95824 1.01936 1.20730 0.88005 0.83696 0.99070 0.88129 1.45369 1.31946 1.11295 1.52590 1.16352 0.80906 0.84375 0.81746 1.91335 1.59496 1.38813 1.43055 1.42586 1.24773 1.09327 1.55653 1.18296 0.85052 0.90449 0.91365 1.20430 1.03523 0.96805 1.17756 1.20536 0.94040 0.96684 0.94704 1.21621 1.04057 0.95991 1.11498 1.18357 0.86925 0.90986 0.88714 1.19529 1.13033 0.91437 1.21928 0.90089 1.26089 0.94902 0.99916 0.95816 1.70213 1.12981 1.21925 1.21948 0.86559 0.78932 0.81448 0.81357 1.19856 1.18742 1.20296 1.68597 1.12500 1.26188 1.11734 1.22135 0.94115 0.96953 0.95968 1.21821 0.81216 0.97564 0.97146 1.86552 1.21543 1.71633 1.57128 1.22791 0.97105 0.99967 0.95727 1.22941 0.97485 0.98211 0.99021 1.23034 0.97089 0.95528 0.99980 0.91189 0.94174 0.92801 0.92162 0.91681 0.93144 0.92388 0.78751 0.77451 0.89287 0.88738 0.88672 0.91640 0.93639 0.93180 0.78105 0.90295 0.91738 0.88612 0.92568 0.91409 0.89726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 8.06 37.16 0.30 -1.88 16 2 C -0.10 -1.28 2.61 -90.62 -0.24 -1.52 16 3 C -0.15 -1.71 7.73 37.16 0.29 -1.43 16 4 C 0.19 2.55 1.45 -67.93 -0.10 2.45 16 5 H 0.10 1.70 7.06 -51.93 -0.37 1.33 16 6 N -0.75 -10.78 4.44 -58.68 -0.26 -11.04 16 7 C 0.67 13.21 7.03 -86.92 -0.61 12.60 16 8 O -0.46 -11.29 10.88 5.30 0.06 -11.23 16 9 N -0.68 -13.28 5.39 -15.79 -0.09 -13.36 16 10 C 0.39 9.49 7.43 -155.00 -1.15 8.34 16 11 C -0.36 -8.13 9.95 -38.89 -0.39 -8.52 16 12 C -0.04 -0.81 10.15 -39.39 -0.40 -1.21 16 13 C -0.31 -7.87 9.83 -38.66 -0.38 -8.25 16 14 C 0.28 7.78 6.51 -85.00 -0.55 7.23 16 15 C -0.43 -11.90 9.13 -37.74 -0.34 -12.24 16 16 H 0.08 2.12 7.86 -52.49 -0.41 1.70 16 17 C 0.06 1.65 5.46 -17.35 -0.09 1.55 16 18 N -0.65 -17.95 9.33 55.55 0.52 -17.43 16 19 Si 0.89 19.48 29.57 -169.99 -5.03 14.45 16 20 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 21 H -0.26 -5.68 7.11 56.52 0.40 -5.27 16 22 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 23 N -0.47 -13.21 5.79 -10.26 -0.06 -13.27 16 24 C -0.09 -0.98 0.70 -153.70 -0.11 -1.09 16 25 C 0.10 0.88 6.04 37.15 0.22 1.11 16 26 O -0.56 -4.66 10.54 -35.23 -0.37 -5.03 16 27 C -0.12 -1.44 6.98 -25.92 -0.18 -1.62 16 28 C -0.14 -1.50 7.54 -25.92 -0.20 -1.69 16 29 C -0.12 -1.22 4.63 -25.92 -0.12 -1.34 16 30 H 0.07 1.33 7.77 -51.93 -0.40 0.93 16 31 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.96 6.61 -51.93 -0.34 0.62 16 33 H 0.06 0.68 6.75 -51.92 -0.35 0.32 16 34 H 0.06 0.62 4.90 -51.93 -0.25 0.37 16 35 H 0.05 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.06 0.69 7.63 -51.93 -0.40 0.30 16 37 H 0.38 4.36 6.80 -40.82 -0.28 4.08 16 38 H 0.39 6.01 8.71 -40.82 -0.36 5.65 16 39 H 0.09 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.09 1.85 8.06 -52.49 -0.42 1.43 16 41 H 0.10 2.26 8.06 -52.49 -0.42 1.84 16 42 H 0.27 7.04 8.29 -40.82 -0.34 6.70 16 43 H 0.05 0.38 6.41 -51.93 -0.33 0.04 16 44 H 0.05 0.41 7.03 -51.93 -0.37 0.04 16 45 H 0.37 1.54 9.12 45.56 0.42 1.96 16 46 H 0.08 1.09 8.03 -51.93 -0.42 0.67 16 47 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 48 H 0.10 1.04 6.18 -51.93 -0.32 0.72 16 49 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 50 H 0.07 0.65 7.18 -51.93 -0.37 0.28 16 51 H 0.08 0.90 6.73 -51.93 -0.35 0.55 16 LS Contribution 388.22 15.07 5.85 5.85 Total: -1.00 -32.84 388.22 -10.42 -43.26 By element: Atomic # 1 Polarization: 22.30 SS G_CDS: -6.99 Total: 15.31 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: -4.05 Total: -7.50 kcal Atomic # 7 Polarization: -55.22 SS G_CDS: 0.11 Total: -55.11 kcal Atomic # 8 Polarization: -15.95 SS G_CDS: -0.31 Total: -16.26 kcal Atomic # 14 Polarization: 19.48 SS G_CDS: -5.03 Total: 14.45 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.84 -10.42 -43.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881144167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.630 kcal (2) G-P(sol) polarization free energy of solvation -32.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.257 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds