Wall clock time and date at job start Wed Apr 1 2020 05:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47184 * 2 1 4 4 C 1.52998 * 109.47188 * 120.00215 * 2 1 3 5 5 H 1.08997 * 109.47057 * 293.44168 * 4 2 1 6 6 N 1.46502 * 109.47332 * 53.44033 * 4 2 1 7 7 C 1.34771 * 119.99919 * 263.25205 * 6 4 2 8 8 O 1.21576 * 120.00491 * 0.02562 * 7 6 4 9 9 N 1.34775 * 120.00082 * 179.97438 * 7 6 4 10 10 C 1.39240 * 120.00561 * 185.34187 * 9 7 6 11 11 C 1.39686 * 119.58267 * 175.14326 * 10 9 7 12 12 C 1.38645 * 119.49863 * 180.02562 * 11 10 9 13 13 C 1.38352 * 118.67189 * 359.72430 * 12 11 10 14 14 C 1.40574 * 119.12756 * 0.51551 * 13 12 11 15 15 C 1.41336 * 119.78626 * 179.74763 * 14 13 12 16 16 H 1.08001 * 119.99629 * 7.96555 * 15 14 13 17 17 C 1.40022 * 120.00181 * 187.96317 * 15 14 13 18 18 N 1.30741 * 120.00026 * 7.65300 * 17 15 14 19 19 Si 1.86804 * 120.00090 * 187.65797 * 17 15 14 20 20 H 1.48494 * 109.47035 * 265.00678 * 19 17 15 21 21 H 1.48500 * 109.47187 * 25.00456 * 19 17 15 22 22 H 1.48498 * 109.47176 * 145.00575 * 19 17 15 23 23 N 1.31906 * 119.57295 * 355.12264 * 10 9 7 24 24 C 1.53004 * 109.47211 * 173.44187 * 4 2 1 25 25 C 1.52993 * 112.84642 * 293.40324 * 24 4 2 26 26 O 1.42905 * 109.46913 * 185.11258 * 25 24 4 27 27 C 1.53777 * 113.61298 * 162.09945 * 24 4 2 28 28 C 1.53780 * 87.08049 * 220.01944 * 27 24 4 29 29 C 1.53778 * 113.61178 * 64.59886 * 24 4 2 30 30 H 1.08999 * 109.47230 * 299.99642 * 1 2 3 31 31 H 1.09003 * 109.47370 * 60.00320 * 1 2 3 32 32 H 1.09005 * 109.47254 * 179.97438 * 1 2 3 33 33 H 1.09007 * 109.47184 * 240.00003 * 2 1 3 34 34 H 1.09000 * 109.47333 * 191.39067 * 3 2 1 35 35 H 1.09005 * 109.46995 * 311.38829 * 3 2 1 36 36 H 1.09001 * 109.47254 * 71.38986 * 3 2 1 37 37 H 0.97003 * 119.99795 * 83.25314 * 6 4 2 38 38 H 0.97008 * 120.00222 * 5.33865 * 9 7 6 39 39 H 1.08002 * 120.24499 * 359.97438 * 11 10 9 40 40 H 1.07998 * 120.66210 * 179.97438 * 12 11 10 41 41 H 1.07995 * 120.43616 * 180.28797 * 13 12 11 42 42 H 0.97004 * 120.00214 * 180.02562 * 18 17 15 43 43 H 1.09001 * 109.47545 * 305.11297 * 25 24 4 44 44 H 1.09003 * 109.47482 * 65.11634 * 25 24 4 45 45 H 0.96705 * 113.99686 * 180.02562 * 26 25 24 46 46 H 1.09007 * 113.61679 * 334.56300 * 27 24 4 47 47 H 1.08995 * 113.61997 * 105.46874 * 27 24 4 48 48 H 1.08999 * 113.61508 * 270.88367 * 28 27 24 49 49 H 1.08999 * 113.61974 * 139.97802 * 28 27 24 50 50 H 1.08995 * 113.61353 * 254.52615 * 29 24 4 51 51 H 1.08994 * 113.61620 * 25.35182 * 29 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.7756 -0.1442 2.1353 6 7 1.4271 -2.0495 1.3307 7 6 0.3362 -2.2422 2.0983 8 8 -0.1396 -1.3139 2.7227 9 7 -0.2280 -3.4640 2.1729 10 6 -1.4173 -3.6400 2.8752 11 6 -2.0478 -4.8864 2.8622 12 6 -3.2323 -5.0597 3.5617 13 6 -3.7535 -3.9856 4.2608 14 6 -3.0743 -2.7551 4.2309 15 6 -3.5971 -1.6472 4.9357 16 1 -4.4410 -1.7774 5.5971 17 6 -3.0211 -0.3810 4.7766 18 7 -2.1002 -0.1912 3.8681 19 14 -3.5681 1.0372 5.8625 20 1 -4.6201 1.8183 5.1639 21 1 -4.1122 0.5034 7.1370 22 1 -2.4069 1.9170 6.1500 23 7 -1.9339 -2.6277 3.5447 24 6 3.5611 -0.8655 1.1695 25 6 4.0112 -1.7980 0.0432 26 8 5.4278 -1.9744 0.1083 27 6 4.2229 -1.1685 2.5242 28 6 5.3446 -0.2047 2.1028 29 6 4.3093 0.4778 1.1932 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1109 1.4492 -0.2030 35 1 1.5204 2.0115 -0.7710 36 1 1.8519 1.8944 0.9739 37 1 1.8065 -2.7901 0.8322 38 1 0.1945 -4.2208 1.7372 39 1 -1.6163 -5.7086 2.3106 40 1 -3.7358 -6.0151 3.5641 41 1 -4.6719 -4.0900 4.8192 42 1 -1.7009 0.6860 3.7581 43 1 3.5193 -2.7645 0.1532 44 1 3.7433 -1.3614 -0.9189 45 1 5.7838 -2.5552 -0.5780 46 1 3.6455 -0.8189 3.3801 47 1 4.5517 -2.2025 2.6280 48 1 6.1540 -0.6889 1.5564 49 1 5.7009 0.4316 2.9129 50 1 4.7079 0.7727 0.2226 51 1 3.7550 1.2777 1.6840 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000881144167.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:25 Heat of formation + Delta-G solvation = -19.650550 kcal Electronic energy + Delta-G solvation = -32657.829177 eV Core-core repulsion = 28558.130285 eV Total energy + Delta-G solvation = -4099.698892 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.80413 -40.69492 -39.34565 -37.16081 -36.30986 -35.73674 -34.79289 -34.07889 -32.18343 -30.92326 -29.63794 -28.26893 -27.47287 -26.63859 -26.06945 -24.01834 -23.42844 -22.98852 -21.43013 -20.72934 -19.87224 -19.49760 -18.92174 -18.11204 -17.90237 -16.87450 -16.51792 -16.34891 -16.24714 -15.95549 -15.81587 -15.70787 -15.43121 -14.89544 -14.66496 -14.60626 -14.31686 -13.85548 -13.73019 -13.55960 -13.30323 -13.28473 -12.92980 -12.88204 -12.73265 -12.70246 -12.57000 -12.51738 -12.37642 -12.30305 -11.87588 -11.80854 -11.62129 -11.43269 -11.29671 -11.05849 -10.89345 -10.80236 -10.73233 -10.59615 -9.88097 -9.63499 -9.06734 -8.74868 -8.08406 -6.36438 0.99403 1.30273 1.38600 1.50234 1.53366 1.85655 2.26862 2.64383 3.05242 3.28930 3.37485 3.51084 3.71044 3.84624 4.05109 4.09511 4.10747 4.15740 4.27043 4.37047 4.45830 4.62009 4.64827 4.67166 4.75267 4.79442 4.84335 4.87581 4.91543 4.94218 4.97929 4.98676 5.06043 5.08945 5.11518 5.14947 5.20771 5.25914 5.29117 5.44444 5.47327 5.55318 5.69393 5.70446 5.83787 5.89123 5.95136 6.07533 6.34198 6.46156 6.85161 7.02580 7.09842 7.31705 8.09637 8.40560 8.58643 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.011774 B = 0.003716 C = 0.003179 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.591858 B = 7533.498798 C = 8806.126050 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.093 4.093 3 C -0.150 4.150 4 C 0.195 3.805 5 H 0.058 0.942 6 N -0.731 5.731 7 C 0.662 3.338 8 O -0.511 6.511 9 N -0.665 5.665 10 C 0.368 3.632 11 C -0.347 4.347 12 C -0.033 4.033 13 C -0.334 4.334 14 C 0.242 3.758 15 C -0.470 4.470 16 H 0.083 0.917 17 C 0.017 3.983 18 N -0.684 5.684 19 Si 0.968 3.032 20 H -0.263 1.263 21 H -0.258 1.258 22 H -0.277 1.277 23 N -0.505 5.505 24 C -0.082 4.082 25 C 0.104 3.896 26 O -0.574 6.574 27 C -0.127 4.127 28 C -0.130 4.130 29 C -0.114 4.114 30 H 0.026 0.974 31 H 0.054 0.946 32 H 0.030 0.970 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.399 0.601 38 H 0.415 0.585 39 H 0.130 0.870 40 H 0.136 0.864 41 H 0.102 0.898 42 H 0.269 0.731 43 H 0.052 0.948 44 H 0.068 0.932 45 H 0.393 0.607 46 H 0.050 0.950 47 H 0.061 0.939 48 H 0.103 0.897 49 H 0.055 0.945 50 H 0.087 0.913 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.381 -0.948 -12.460 20.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.113 4.113 3 C -0.208 4.208 4 C 0.090 3.910 5 H 0.076 0.924 6 N -0.390 5.390 7 C 0.361 3.639 8 O -0.378 6.378 9 N -0.315 5.315 10 C 0.127 3.873 11 C -0.373 4.373 12 C -0.057 4.057 13 C -0.357 4.357 14 C 0.117 3.883 15 C -0.501 4.501 16 H 0.101 0.899 17 C -0.209 4.209 18 N -0.303 5.303 19 Si 0.790 3.210 20 H -0.188 1.188 21 H -0.181 1.181 22 H -0.202 1.202 23 N -0.224 5.224 24 C -0.083 4.083 25 C 0.027 3.973 26 O -0.383 6.383 27 C -0.164 4.164 28 C -0.167 4.167 29 C -0.152 4.152 30 H 0.046 0.954 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.235 0.765 38 H 0.251 0.749 39 H 0.148 0.852 40 H 0.154 0.846 41 H 0.120 0.880 42 H 0.080 0.920 43 H 0.070 0.930 44 H 0.086 0.914 45 H 0.243 0.757 46 H 0.068 0.932 47 H 0.080 0.920 48 H 0.121 0.879 49 H 0.074 0.926 50 H 0.105 0.895 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 16.448 1.342 -11.485 20.106 hybrid contribution -0.818 -1.407 -0.028 1.628 sum 15.629 -0.065 -11.513 19.412 Atomic orbital electron populations 1.21627 0.96561 1.00196 1.00170 1.21463 0.94436 0.97307 0.98107 1.22137 1.02805 0.94519 1.01311 1.20699 0.89900 0.82547 0.97901 0.92415 1.45075 1.30144 1.12490 1.51277 1.16600 0.81660 0.83811 0.81863 1.91334 1.61146 1.40247 1.45087 1.42439 1.23650 1.10334 1.55109 1.18795 0.86392 0.90755 0.91321 1.20906 1.02851 0.97054 1.16476 1.21005 0.94025 0.97558 0.93158 1.21798 1.04728 0.96219 1.12969 1.18825 0.87738 0.92381 0.89393 1.19823 1.14244 0.92613 1.23433 0.89919 1.26894 0.94730 1.02177 0.97072 1.70393 1.14180 1.22167 1.23548 0.85413 0.78455 0.77742 0.79427 1.18813 1.18129 1.20186 1.68564 1.12934 1.28162 1.12737 1.22090 0.91721 0.98232 0.96263 1.21730 0.81917 0.97250 0.96437 1.86483 1.20856 1.72455 1.58460 1.22758 0.97954 1.00069 0.95640 1.22884 0.97157 0.97639 0.99061 1.23015 0.96561 0.94897 1.00733 0.95428 0.92654 0.95109 0.89242 0.89339 0.92314 0.94155 0.76511 0.74878 0.85184 0.84644 0.87991 0.92049 0.92950 0.91420 0.75670 0.93171 0.92024 0.87880 0.92594 0.89485 0.90576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.17 8.06 71.98 0.58 -3.59 16 2 C -0.09 -2.24 2.61 -10.80 -0.03 -2.27 16 3 C -0.15 -3.14 7.73 71.98 0.56 -2.58 16 4 C 0.20 5.23 1.45 44.99 0.07 5.30 16 5 H 0.06 2.10 7.06 -2.39 -0.02 2.08 16 6 N -0.73 -20.75 4.44 -457.83 -2.03 -22.78 16 7 C 0.66 26.95 7.03 179.06 1.26 28.21 16 8 O -0.51 -26.49 10.88 -3.96 -0.04 -26.53 16 9 N -0.66 -26.03 5.39 -322.13 -1.74 -27.77 16 10 C 0.37 18.08 7.43 133.26 0.99 19.07 16 11 C -0.35 -15.07 9.95 22.72 0.23 -14.84 16 12 C -0.03 -1.48 10.15 22.39 0.23 -1.25 16 13 C -0.33 -17.31 9.83 22.87 0.22 -17.08 16 14 C 0.24 14.28 6.51 40.19 0.26 14.54 16 15 C -0.47 -27.46 9.13 23.47 0.21 -27.24 16 16 H 0.08 4.55 7.86 -2.91 -0.02 4.53 16 17 C 0.02 0.97 5.46 85.29 0.47 1.44 16 18 N -0.68 -40.08 9.33 21.84 0.20 -39.88 16 19 Si 0.97 42.00 29.57 68.60 2.03 44.03 16 20 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 21 H -0.26 -10.78 7.11 99.48 0.71 -10.07 16 22 H -0.28 -11.79 7.11 99.48 0.71 -11.09 16 23 N -0.50 -29.42 5.79 -186.36 -1.08 -30.50 16 24 C -0.08 -1.66 0.70 -51.66 -0.04 -1.70 16 25 C 0.10 1.47 6.04 71.98 0.43 1.90 16 26 O -0.57 -7.31 10.54 -148.98 -1.57 -8.88 16 27 C -0.13 -3.05 6.98 31.12 0.22 -2.83 16 28 C -0.13 -2.61 7.54 31.12 0.23 -2.37 16 29 C -0.11 -2.15 4.63 31.12 0.14 -2.00 16 30 H 0.03 1.11 7.77 -2.39 -0.02 1.09 16 31 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.03 1.11 6.61 -2.38 -0.02 1.10 16 33 H 0.09 1.69 6.75 -2.38 -0.02 1.67 16 34 H 0.09 1.43 4.90 -2.39 -0.01 1.42 16 35 H 0.06 1.14 8.10 -2.38 -0.02 1.13 16 36 H 0.04 0.98 7.63 -2.39 -0.02 0.97 16 37 H 0.40 8.38 6.80 -92.71 -0.63 7.74 16 38 H 0.41 11.92 8.71 -92.70 -0.81 11.11 16 39 H 0.13 4.51 8.06 -2.91 -0.02 4.49 16 40 H 0.14 4.83 8.06 -2.91 -0.02 4.80 16 41 H 0.10 4.95 8.06 -2.91 -0.02 4.93 16 42 H 0.27 14.97 8.29 -92.71 -0.77 14.21 16 43 H 0.05 0.67 6.41 -2.39 -0.02 0.65 16 44 H 0.07 0.76 7.03 -2.39 -0.02 0.74 16 45 H 0.39 1.59 9.12 -74.05 -0.68 0.91 16 46 H 0.05 1.48 8.03 -2.38 -0.02 1.46 16 47 H 0.06 1.49 8.10 -2.39 -0.02 1.47 16 48 H 0.10 1.97 6.18 -2.39 -0.01 1.96 16 49 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 50 H 0.09 1.34 7.18 -2.39 -0.02 1.32 16 51 H 0.08 1.58 6.73 -2.39 -0.02 1.56 16 Total: -1.00 -77.61 388.22 0.68 -76.94 By element: Atomic # 1 Polarization: 43.80 SS G_CDS: -1.13 Total: 42.67 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 6.04 Total: -7.29 kcal Atomic # 7 Polarization: -116.28 SS G_CDS: -4.65 Total: -120.93 kcal Atomic # 8 Polarization: -33.80 SS G_CDS: -1.61 Total: -35.41 kcal Atomic # 14 Polarization: 42.00 SS G_CDS: 2.03 Total: 44.03 kcal Total: -77.61 0.68 -76.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000881144167.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.286 kcal (2) G-P(sol) polarization free energy of solvation -77.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds