Wall clock time and date at job start Wed Apr 1 2020 04:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47285 * 2 1 4 4 C 1.53008 * 109.46638 * 240.00323 * 2 1 3 5 5 C 1.50697 * 109.47028 * 60.00037 * 4 2 1 6 6 H 1.08002 * 120.00445 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99912 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00174 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00363 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47286 * 89.99975 * 9 7 5 11 11 H 1.48496 * 109.47445 * 210.00584 * 9 7 5 12 12 H 1.48503 * 109.47038 * 330.00407 * 9 7 5 13 13 C 1.52997 * 109.46983 * 120.00748 * 2 1 3 14 14 N 1.46503 * 109.47193 * 299.99486 * 13 2 1 15 15 C 1.38456 * 120.00349 * 180.02562 * 14 13 2 16 16 C 1.39395 * 119.53640 * 0.02562 * 15 14 13 17 17 C 1.36859 * 119.38170 * 179.97438 * 16 15 14 18 18 C 1.40355 * 118.48606 * 0.02562 * 17 16 15 19 19 C 1.47546 * 120.46906 * 179.72422 * 18 17 16 20 20 O 1.21594 * 119.99642 * 218.23235 * 19 18 17 21 21 N 1.34777 * 120.00357 * 38.23660 * 19 18 17 22 22 C 1.47148 * 120.97950 * 5.53364 * 21 19 18 23 23 C 1.53716 * 108.16287 * 129.43578 * 22 21 19 24 24 O 1.42961 * 109.14571 * 52.53636 * 23 22 21 25 25 C 1.42967 * 114.16521 * 297.28998 * 24 23 22 26 26 C 1.47147 * 120.98217 * 185.81741 * 21 19 18 27 27 C 1.39551 * 119.05289 * 359.97438 * 18 17 16 28 28 N 1.31677 * 120.51608 * 0.02562 * 27 18 17 29 29 H 1.09005 * 109.46654 * 300.00027 * 1 2 3 30 30 H 1.09001 * 109.47266 * 59.99055 * 1 2 3 31 31 H 1.08999 * 109.47422 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47268 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47710 * 300.00488 * 3 2 1 34 34 H 1.09006 * 109.47081 * 60.00874 * 3 2 1 35 35 H 1.08998 * 109.46599 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.47103 * 300.00059 * 4 2 1 37 37 H 0.97003 * 120.00197 * 179.97438 * 8 7 5 38 38 H 1.09010 * 109.47018 * 179.97438 * 13 2 1 39 39 H 1.08999 * 109.47501 * 59.99486 * 13 2 1 40 40 H 0.97002 * 119.99640 * 0.02562 * 14 13 2 41 41 H 1.08006 * 120.31300 * 359.97438 * 16 15 14 42 42 H 1.07999 * 120.75774 * 179.97438 * 17 16 15 43 43 H 1.08999 * 109.68296 * 249.21215 * 22 21 19 44 44 H 1.09004 * 109.68711 * 9.76837 * 22 21 19 45 45 H 1.09004 * 109.65492 * 292.57234 * 23 22 21 46 46 H 1.08998 * 109.48600 * 172.39994 * 23 22 21 47 47 H 1.08994 * 109.51257 * 302.65799 * 25 24 23 48 48 H 1.08999 * 109.54960 * 182.52768 * 25 24 23 49 49 H 1.08997 * 109.68189 * 350.23921 * 26 21 19 50 50 H 1.09005 * 109.68011 * 110.78665 * 26 21 19 51 51 H 1.08003 * 119.74384 * 180.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5375 -0.0107 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8709 -0.4814 -3.7320 8 7 2.6270 -1.5508 -3.8528 9 14 1.2489 0.3996 -5.2572 10 1 2.2272 1.4414 -5.6608 11 1 1.0840 -0.5791 -6.3617 12 1 -0.0593 1.0373 -4.9615 13 6 2.0400 -0.7214 1.2491 14 7 1.5517 -0.0309 2.4454 15 6 1.8866 -0.5037 3.7029 16 6 2.6894 -1.6373 3.8195 17 6 3.0189 -2.1016 5.0640 18 6 2.5315 -1.4134 6.1860 19 6 2.8547 -1.8793 7.5481 20 8 2.0149 -1.8218 8.4256 21 7 4.0808 -2.3686 7.8199 22 6 5.1499 -2.3372 6.8094 23 6 6.4001 -1.7170 7.4537 24 8 6.6952 -2.4113 8.6680 25 6 5.6736 -2.3102 9.6631 26 6 4.3879 -2.9557 9.1338 27 6 1.7326 -0.2853 5.9947 28 7 1.4393 0.1280 4.7794 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8898 34 1 1.6768 1.9562 0.8901 35 1 3.1299 -0.7216 -1.2491 36 1 1.6765 -1.7489 -1.2494 37 1 2.8613 -1.8821 -4.7339 38 1 3.1301 -0.7218 1.2489 39 1 1.6766 -1.7490 1.2491 40 1 0.9938 0.7576 2.3565 41 1 3.0480 -2.1445 2.9360 42 1 3.6391 -2.9781 5.1802 43 1 5.3700 -3.3514 6.4761 44 1 4.8345 -1.7314 5.9598 45 1 6.2168 -0.6647 7.6712 46 1 7.2438 -1.8056 6.7693 47 1 5.4877 -1.2602 9.8886 48 1 5.9939 -2.8259 10.5683 49 1 3.5676 -2.7598 9.8242 50 1 4.5326 -4.0311 9.0306 51 1 1.3520 0.2530 6.8502 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882375423.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:46 Heat of formation + Delta-G solvation = -41.144088 kcal Electronic energy + Delta-G solvation = -30318.160018 eV Core-core repulsion = 26217.529097 eV Total energy + Delta-G solvation = -4100.630922 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.07772 -39.93262 -38.50928 -37.71891 -35.22518 -34.57601 -32.93990 -32.33447 -31.69688 -29.96714 -28.19333 -27.12928 -26.60106 -26.37687 -24.77844 -23.86997 -23.52366 -22.73849 -21.81047 -19.95630 -18.50969 -17.86155 -17.58251 -16.92897 -16.65396 -16.34821 -16.25541 -15.96522 -15.53756 -14.96129 -14.85213 -14.82031 -14.68474 -14.33818 -14.25833 -13.84926 -13.50482 -13.38142 -13.13410 -12.97297 -12.75713 -12.54835 -12.43577 -12.24651 -12.14433 -11.84733 -11.35845 -11.17186 -11.09422 -10.92356 -10.74014 -10.61979 -10.55930 -10.39293 -10.33773 -10.15133 -9.96564 -9.80321 -9.53028 -9.33485 -9.04427 -8.95312 -8.44496 -7.74248 -6.09060 -4.10263 0.88396 1.21918 2.47628 2.63639 3.17166 3.25581 3.33071 3.35234 3.36038 3.79592 4.20760 4.28658 4.38278 4.45901 4.55600 4.59301 4.70880 4.77111 4.80176 4.94563 5.02430 5.08425 5.15938 5.26426 5.26648 5.29261 5.34179 5.41548 5.45478 5.59960 5.66520 5.77789 5.89335 5.99825 6.01505 6.03220 6.12034 6.25903 6.36792 6.53629 6.54228 6.62105 6.88588 6.96071 6.96889 6.98154 7.05013 7.50524 7.56123 7.62448 7.87724 7.89023 8.07105 8.30911 8.94061 9.53552 11.02299 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021389 B = 0.001887 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.748131 B =14834.710663 C =15610.980497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 C -0.128 4.128 4 C 0.037 3.963 5 C -0.512 4.512 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.895 5.895 9 Si 0.890 3.110 10 H -0.281 1.281 11 H -0.287 1.287 12 H -0.274 1.274 13 C 0.128 3.872 14 N -0.699 5.699 15 C 0.431 3.569 16 C -0.245 4.245 17 C -0.004 4.004 18 C -0.274 4.274 19 C 0.581 3.419 20 O -0.541 6.541 21 N -0.616 5.616 22 C 0.065 3.935 23 C 0.047 3.953 24 O -0.380 6.380 25 C 0.048 3.952 26 C 0.078 3.922 27 C 0.215 3.785 28 N -0.554 5.554 29 H 0.031 0.969 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.047 0.953 33 H 0.068 0.932 34 H 0.031 0.969 35 H 0.018 0.982 36 H 0.018 0.982 37 H 0.260 0.740 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.407 0.593 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.058 0.942 46 H 0.108 0.892 47 H 0.056 0.944 48 H 0.106 0.894 49 H 0.103 0.897 50 H 0.076 0.924 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.272 -1.483 23.307 24.182 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.071 4.071 3 C -0.186 4.186 4 C 0.000 4.000 5 C -0.550 4.550 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.718 3.282 10 H -0.207 1.207 11 H -0.213 1.213 12 H -0.199 1.199 13 C 0.004 3.996 14 N -0.327 5.327 15 C 0.192 3.808 16 C -0.270 4.270 17 C -0.030 4.030 18 C -0.283 4.283 19 C 0.371 3.629 20 O -0.418 6.418 21 N -0.351 5.351 22 C -0.058 4.058 23 C -0.031 4.031 24 O -0.298 6.298 25 C -0.029 4.029 26 C -0.045 4.045 27 C 0.054 3.946 28 N -0.272 5.272 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.050 0.950 35 H 0.037 0.963 36 H 0.037 0.963 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.245 0.755 41 H 0.158 0.842 42 H 0.153 0.847 43 H 0.098 0.902 44 H 0.123 0.877 45 H 0.076 0.924 46 H 0.126 0.874 47 H 0.075 0.925 48 H 0.124 0.876 49 H 0.121 0.879 50 H 0.094 0.906 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 5.614 -1.041 23.302 23.992 hybrid contribution -0.154 -0.018 -1.032 1.043 sum 5.460 -1.059 22.271 22.954 Atomic orbital electron populations 1.21775 0.95048 1.01254 1.00547 1.20895 0.95699 0.95974 0.94536 1.21770 1.00477 0.95789 1.00543 1.19093 0.96283 0.95194 0.89458 1.21161 1.31306 1.12129 0.90452 0.92220 1.25007 0.95266 0.95061 0.99140 1.69951 1.36934 1.22975 1.23541 0.86634 0.79237 0.79423 0.82946 1.20733 1.21302 1.19916 1.21848 0.98649 0.96090 0.82969 1.45016 1.53820 1.32087 1.01767 1.18700 0.87579 0.88188 0.86368 1.21174 1.06574 1.00308 0.98939 1.21216 0.93639 0.96989 0.91122 1.20277 1.11048 1.03992 0.92978 1.18124 0.80930 0.76079 0.87724 1.90768 1.47368 1.55715 1.47996 1.47997 1.11186 1.61474 1.14468 1.22872 0.87748 1.02848 0.92338 1.23101 0.97520 0.95663 0.86815 1.87973 1.42690 1.74342 1.24838 1.22990 0.87559 1.00831 0.91570 1.22288 0.98826 0.98011 0.85379 1.22465 0.88166 0.90488 0.93478 1.67367 1.27945 1.33862 0.97980 0.95022 0.91292 0.93330 0.93341 0.91299 0.95033 0.96336 0.96328 0.92990 0.91677 0.91698 0.75506 0.84175 0.84668 0.90191 0.87655 0.92413 0.87369 0.92527 0.87568 0.87907 0.90601 0.82284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.18 8.05 37.16 0.30 -1.88 16 2 C -0.07 -1.23 0.54 -154.51 -0.08 -1.31 16 3 C -0.13 -2.14 8.05 37.15 0.30 -1.84 16 4 C 0.04 0.84 4.04 -27.88 -0.11 0.73 16 5 C -0.51 -13.01 7.65 -34.44 -0.26 -13.28 16 6 H 0.06 1.47 5.68 -52.49 -0.30 1.18 16 7 C 0.06 1.51 5.46 -17.82 -0.10 1.42 16 8 N -0.89 -25.34 13.29 55.43 0.74 -24.60 16 9 Si 0.89 20.63 29.54 -169.99 -5.02 15.60 16 10 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 11 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 12 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 13 C 0.13 1.86 3.76 -4.04 -0.02 1.85 16 14 N -0.70 -9.44 5.11 -60.45 -0.31 -9.75 16 15 C 0.43 5.76 7.64 -155.29 -1.19 4.58 16 16 C -0.24 -2.83 9.25 -39.65 -0.37 -3.20 16 17 C 0.00 -0.04 7.48 -39.28 -0.29 -0.34 16 18 C -0.27 -3.16 5.19 -104.82 -0.54 -3.70 16 19 C 0.58 6.90 7.37 -12.46 -0.09 6.81 16 20 O -0.54 -8.06 16.37 5.28 0.09 -7.98 16 21 N -0.62 -5.66 3.01 -173.25 -0.52 -6.18 16 22 C 0.06 0.45 5.04 -3.32 -0.02 0.44 16 23 C 0.05 0.31 7.00 37.53 0.26 0.57 16 24 O -0.38 -3.11 10.74 -35.23 -0.38 -3.49 16 25 C 0.05 0.32 6.98 37.31 0.26 0.58 16 26 C 0.08 0.60 6.65 -3.54 -0.02 0.58 16 27 C 0.22 2.68 10.79 -17.13 -0.18 2.50 16 28 N -0.55 -7.63 10.38 -12.15 -0.13 -7.76 16 29 H 0.03 0.46 6.86 -51.93 -0.36 0.10 16 30 H 0.07 1.27 6.62 -51.93 -0.34 0.93 16 31 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 34 H 0.03 0.45 6.86 -51.93 -0.36 0.09 16 35 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 38 H 0.07 0.93 7.91 -51.92 -0.41 0.52 16 39 H 0.06 0.95 7.91 -51.93 -0.41 0.54 16 40 H 0.41 5.50 6.28 -40.82 -0.26 5.25 16 41 H 0.14 1.49 6.66 -52.48 -0.35 1.14 16 42 H 0.14 1.05 6.39 -52.49 -0.34 0.71 16 43 H 0.08 0.48 8.02 -51.93 -0.42 0.06 16 44 H 0.11 0.73 4.88 -51.93 -0.25 0.48 16 45 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 48 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 49 H 0.10 0.87 7.06 -51.93 -0.37 0.51 16 50 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 51 H 0.16 1.78 8.04 -52.48 -0.42 1.36 16 LS Contribution 398.08 15.07 6.00 6.00 Total: -1.00 -30.78 398.08 -9.55 -40.33 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -7.86 Total: 3.31 kcal Atomic # 6 Polarization: -3.33 SS G_CDS: -2.16 Total: -5.49 kcal Atomic # 7 Polarization: -48.07 SS G_CDS: -0.22 Total: -48.29 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.29 Total: -11.46 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -30.78 -9.55 -40.33 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882375423.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.810 kcal (2) G-P(sol) polarization free energy of solvation -30.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds