Wall clock time and date at job start Wed Apr 1 2020 04:52:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52992 * 109.47285 * 2 1 4 4 C 1.53008 * 109.46638 * 240.00323 * 2 1 3 5 5 C 1.50697 * 109.47028 * 60.00037 * 4 2 1 6 6 H 1.08002 * 120.00445 * 0.02562 * 5 4 2 7 7 C 1.37873 * 119.99912 * 179.97438 * 5 4 2 8 8 N 1.31519 * 120.00174 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 120.00363 * 180.02562 * 7 5 4 10 10 H 1.48503 * 109.47286 * 89.99975 * 9 7 5 11 11 H 1.48496 * 109.47445 * 210.00584 * 9 7 5 12 12 H 1.48503 * 109.47038 * 330.00407 * 9 7 5 13 13 C 1.52997 * 109.46983 * 120.00748 * 2 1 3 14 14 N 1.46503 * 109.47193 * 299.99486 * 13 2 1 15 15 C 1.38456 * 120.00349 * 180.02562 * 14 13 2 16 16 C 1.39395 * 119.53640 * 0.02562 * 15 14 13 17 17 C 1.36859 * 119.38170 * 179.97438 * 16 15 14 18 18 C 1.40355 * 118.48606 * 0.02562 * 17 16 15 19 19 C 1.47546 * 120.46906 * 179.72422 * 18 17 16 20 20 O 1.21594 * 119.99642 * 218.23235 * 19 18 17 21 21 N 1.34777 * 120.00357 * 38.23660 * 19 18 17 22 22 C 1.47148 * 120.97950 * 5.53364 * 21 19 18 23 23 C 1.53716 * 108.16287 * 129.43578 * 22 21 19 24 24 O 1.42961 * 109.14571 * 52.53636 * 23 22 21 25 25 C 1.42967 * 114.16521 * 297.28998 * 24 23 22 26 26 C 1.47147 * 120.98217 * 185.81741 * 21 19 18 27 27 C 1.39551 * 119.05289 * 359.97438 * 18 17 16 28 28 N 1.31677 * 120.51608 * 0.02562 * 27 18 17 29 29 H 1.09005 * 109.46654 * 300.00027 * 1 2 3 30 30 H 1.09001 * 109.47266 * 59.99055 * 1 2 3 31 31 H 1.08999 * 109.47422 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.47268 * 179.97438 * 3 2 1 33 33 H 1.08992 * 109.47710 * 300.00488 * 3 2 1 34 34 H 1.09006 * 109.47081 * 60.00874 * 3 2 1 35 35 H 1.08998 * 109.46599 * 180.02562 * 4 2 1 36 36 H 1.08999 * 109.47103 * 300.00059 * 4 2 1 37 37 H 0.97003 * 120.00197 * 179.97438 * 8 7 5 38 38 H 1.09010 * 109.47018 * 179.97438 * 13 2 1 39 39 H 1.08999 * 109.47501 * 59.99486 * 13 2 1 40 40 H 0.97002 * 119.99640 * 0.02562 * 14 13 2 41 41 H 1.08006 * 120.31300 * 359.97438 * 16 15 14 42 42 H 1.07999 * 120.75774 * 179.97438 * 17 16 15 43 43 H 1.08999 * 109.68296 * 249.21215 * 22 21 19 44 44 H 1.09004 * 109.68711 * 9.76837 * 22 21 19 45 45 H 1.09004 * 109.65492 * 292.57234 * 23 22 21 46 46 H 1.08998 * 109.48600 * 172.39994 * 23 22 21 47 47 H 1.08994 * 109.51257 * 302.65799 * 25 24 23 48 48 H 1.08999 * 109.54960 * 182.52768 * 25 24 23 49 49 H 1.08997 * 109.68189 * 350.23921 * 26 21 19 50 50 H 1.09005 * 109.68011 * 110.78665 * 26 21 19 51 51 H 1.08003 * 119.74384 * 180.02562 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7212 -1.2494 5 6 1.5375 -0.0107 -2.4797 6 1 0.9170 0.8676 -2.3806 7 6 1.8709 -0.4814 -3.7320 8 7 2.6270 -1.5508 -3.8528 9 14 1.2489 0.3996 -5.2572 10 1 2.2272 1.4414 -5.6608 11 1 1.0840 -0.5791 -6.3617 12 1 -0.0593 1.0373 -4.9615 13 6 2.0400 -0.7214 1.2491 14 7 1.5517 -0.0309 2.4454 15 6 1.8866 -0.5037 3.7029 16 6 2.6894 -1.6373 3.8195 17 6 3.0189 -2.1016 5.0640 18 6 2.5315 -1.4134 6.1860 19 6 2.8547 -1.8793 7.5481 20 8 2.0149 -1.8218 8.4256 21 7 4.0808 -2.3686 7.8199 22 6 5.1499 -2.3372 6.8094 23 6 6.4001 -1.7170 7.4537 24 8 6.6952 -2.4113 8.6680 25 6 5.6736 -2.3102 9.6631 26 6 4.3879 -2.9557 9.1338 27 6 1.7326 -0.2853 5.9947 28 7 1.4393 0.1280 4.7794 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5140 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6767 1.9563 -0.8898 34 1 1.6768 1.9562 0.8901 35 1 3.1299 -0.7216 -1.2491 36 1 1.6765 -1.7489 -1.2494 37 1 2.8613 -1.8821 -4.7339 38 1 3.1301 -0.7218 1.2489 39 1 1.6766 -1.7490 1.2491 40 1 0.9938 0.7576 2.3565 41 1 3.0480 -2.1445 2.9360 42 1 3.6391 -2.9781 5.1802 43 1 5.3700 -3.3514 6.4761 44 1 4.8345 -1.7314 5.9598 45 1 6.2168 -0.6647 7.6712 46 1 7.2438 -1.8056 6.7693 47 1 5.4877 -1.2602 9.8886 48 1 5.9939 -2.8259 10.5683 49 1 3.5676 -2.7598 9.8242 50 1 4.5326 -4.0311 9.0306 51 1 1.3520 0.2530 6.8502 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882375423.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:52:45 Heat of formation + Delta-G solvation = -59.679518 kcal Electronic energy + Delta-G solvation = -30318.963775 eV Core-core repulsion = 26217.529097 eV Total energy + Delta-G solvation = -4101.434678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.93912 -40.78197 -39.38483 -38.93635 -36.07897 -35.78057 -34.27482 -33.71703 -32.32561 -30.98014 -29.13191 -28.71032 -27.97859 -27.53864 -25.54900 -25.07232 -24.43307 -23.98928 -22.68538 -20.73191 -19.82190 -18.79417 -18.57145 -18.34498 -17.70225 -17.45104 -16.97320 -16.64462 -16.52615 -16.11738 -16.00014 -15.77989 -15.62687 -15.36268 -15.33162 -14.99678 -14.60524 -14.40708 -14.29114 -14.17620 -13.93920 -13.86386 -13.53250 -13.29527 -12.93686 -12.86354 -12.72698 -12.65271 -12.36236 -12.33018 -12.22492 -11.98100 -11.77358 -11.62655 -11.30170 -11.24814 -11.02695 -10.99494 -10.85482 -10.77823 -10.49125 -10.47352 -9.66538 -8.74430 -8.13728 -6.19447 -0.05710 0.32096 1.41822 1.43416 1.52310 1.64741 1.82167 2.11476 2.45083 2.83110 2.87806 3.21363 3.42946 3.59919 3.71946 3.80702 3.92268 3.98199 4.01720 4.09086 4.09900 4.15857 4.22015 4.24560 4.29921 4.49588 4.64734 4.67768 4.71088 4.73529 4.73774 4.76049 4.83159 4.90698 4.92072 4.95765 5.04543 5.11770 5.14048 5.30615 5.41202 5.49371 5.50620 5.52627 5.57498 5.81374 5.90717 5.94145 6.09457 6.19257 6.34024 6.52995 6.95079 7.00479 7.08584 7.47716 8.98018 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.021389 B = 0.001887 C = 0.001793 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1308.748131 B =14834.710663 C =15610.980497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.064 4.064 3 C -0.123 4.123 4 C 0.043 3.957 5 C -0.515 4.515 6 H 0.065 0.935 7 C -0.001 4.001 8 N -0.933 5.933 9 Si 0.951 3.049 10 H -0.277 1.277 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.143 3.857 14 N -0.700 5.700 15 C 0.417 3.583 16 C -0.246 4.246 17 C 0.009 3.991 18 C -0.271 4.271 19 C 0.579 3.421 20 O -0.579 6.579 21 N -0.612 5.612 22 C 0.062 3.938 23 C 0.045 3.955 24 O -0.393 6.393 25 C 0.051 3.949 26 C 0.075 3.925 27 C 0.204 3.796 28 N -0.569 5.569 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.042 0.958 32 H 0.044 0.956 33 H 0.050 0.950 34 H 0.058 0.942 35 H -0.004 1.004 36 H -0.006 1.006 37 H 0.259 0.741 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.407 0.593 41 H 0.151 0.849 42 H 0.164 0.836 43 H 0.098 0.902 44 H 0.107 0.893 45 H 0.053 0.947 46 H 0.128 0.872 47 H 0.052 0.948 48 H 0.128 0.872 49 H 0.092 0.908 50 H 0.088 0.912 51 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.906 -1.419 24.241 25.245 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.065 4.065 3 C -0.180 4.180 4 C 0.005 3.995 5 C -0.553 4.553 6 H 0.083 0.917 7 C -0.198 4.198 8 N -0.574 5.574 9 Si 0.777 3.223 10 H -0.203 1.203 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.019 3.981 14 N -0.328 5.328 15 C 0.179 3.821 16 C -0.271 4.271 17 C -0.017 4.017 18 C -0.280 4.280 19 C 0.369 3.631 20 O -0.460 6.460 21 N -0.345 5.345 22 C -0.060 4.060 23 C -0.032 4.032 24 O -0.312 6.312 25 C -0.026 4.026 26 C -0.047 4.047 27 C 0.043 3.957 28 N -0.288 5.288 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.069 0.931 34 H 0.077 0.923 35 H 0.015 0.985 36 H 0.012 0.988 37 H 0.068 0.932 38 H 0.088 0.912 39 H 0.083 0.917 40 H 0.245 0.755 41 H 0.169 0.831 42 H 0.181 0.819 43 H 0.116 0.884 44 H 0.125 0.875 45 H 0.071 0.929 46 H 0.146 0.854 47 H 0.070 0.930 48 H 0.146 0.854 49 H 0.110 0.890 50 H 0.106 0.894 51 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 6.274 -0.971 24.258 25.075 hybrid contribution -0.301 -0.067 -1.216 1.254 sum 5.973 -1.038 23.042 23.827 Atomic orbital electron populations 1.21702 0.94462 1.00995 1.00940 1.20686 0.96071 0.96157 0.93537 1.21692 1.00238 0.95126 1.00965 1.18948 0.94747 0.94287 0.91491 1.21587 1.30327 1.11952 0.91410 0.91672 1.25823 0.95791 0.95879 1.02307 1.70075 1.38659 1.24647 1.24013 0.85659 0.79017 0.78256 0.79381 1.20276 1.21511 1.18968 1.21521 0.98759 0.95632 0.82193 1.44776 1.54379 1.32200 1.01484 1.18851 0.88304 0.88922 0.86066 1.21334 1.06160 0.99788 0.99857 1.21457 0.92967 0.97224 0.90024 1.20345 1.10603 1.03650 0.93396 1.18179 0.81431 0.76065 0.87397 1.90751 1.48758 1.57557 1.48916 1.48095 1.10747 1.60176 1.15493 1.23053 0.87087 1.03991 0.91825 1.23214 0.98010 0.95239 0.86747 1.87962 1.43220 1.74554 1.25433 1.23055 0.86760 1.00781 0.92021 1.22416 0.99019 0.98742 0.84562 1.22606 0.88620 0.91161 0.93295 1.67314 1.28550 1.34526 0.98397 0.92336 0.93104 0.93926 0.93671 0.93105 0.92301 0.98548 0.98756 0.93170 0.91215 0.91678 0.75535 0.83137 0.81884 0.88424 0.87522 0.92860 0.85378 0.92998 0.85399 0.88970 0.89362 0.81851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.05 8.05 71.98 0.58 -3.48 16 2 C -0.06 -2.19 0.54 -52.18 -0.03 -2.21 16 3 C -0.12 -3.95 8.05 71.98 0.58 -3.37 16 4 C 0.04 1.98 4.04 29.85 0.12 2.10 16 5 C -0.51 -26.35 7.65 25.60 0.20 -26.15 16 6 H 0.07 3.21 5.68 -2.91 -0.02 3.19 16 7 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 8 N -0.93 -53.83 13.29 21.45 0.28 -53.55 16 9 Si 0.95 42.49 29.54 68.60 2.03 44.51 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.40 16 11 H -0.29 -12.92 7.11 99.48 0.71 -12.22 16 12 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 13 C 0.14 3.99 3.76 86.38 0.33 4.32 16 14 N -0.70 -17.74 5.11 -345.17 -1.76 -19.51 16 15 C 0.42 10.51 7.64 133.25 1.02 11.53 16 16 C -0.25 -5.18 9.25 22.23 0.21 -4.98 16 17 C 0.01 0.15 7.48 22.46 0.17 0.32 16 18 C -0.27 -5.88 5.19 -19.99 -0.10 -5.98 16 19 C 0.58 13.17 7.37 86.70 0.64 13.80 16 20 O -0.58 -17.21 16.37 -4.01 -0.07 -17.27 16 21 N -0.61 -10.19 3.01 -820.29 -2.47 -12.66 16 22 C 0.06 0.71 5.04 86.50 0.44 1.15 16 23 C 0.05 0.49 7.00 72.22 0.51 1.00 16 24 O -0.39 -5.54 10.74 -148.98 -1.60 -7.14 16 25 C 0.05 0.58 6.98 72.08 0.50 1.09 16 26 C 0.07 1.04 6.65 86.35 0.57 1.62 16 27 C 0.20 4.92 10.79 85.03 0.92 5.84 16 28 N -0.57 -15.10 10.38 -192.34 -2.00 -17.09 16 29 H 0.06 1.59 6.86 -2.38 -0.02 1.58 16 30 H 0.05 1.84 6.62 -2.39 -0.02 1.82 16 31 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 32 H 0.04 1.46 8.14 -2.38 -0.02 1.44 16 33 H 0.05 1.81 6.62 -2.39 -0.02 1.79 16 34 H 0.06 1.56 6.86 -2.38 -0.02 1.55 16 35 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 36 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 37 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 38 H 0.07 1.89 7.91 -2.38 -0.02 1.87 16 39 H 0.07 1.83 7.91 -2.39 -0.02 1.81 16 40 H 0.41 10.21 6.28 -92.71 -0.58 9.63 16 41 H 0.15 2.85 6.66 -2.91 -0.02 2.83 16 42 H 0.16 1.98 6.39 -2.91 -0.02 1.96 16 43 H 0.10 0.82 8.02 -2.39 -0.02 0.80 16 44 H 0.11 1.20 4.88 -2.38 -0.01 1.19 16 45 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 46 H 0.13 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 49 H 0.09 1.51 7.06 -2.39 -0.02 1.50 16 50 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 51 H 0.16 3.66 8.04 -2.91 -0.02 3.64 16 Total: -1.00 -66.89 398.08 1.88 -65.01 By element: Atomic # 1 Polarization: 20.32 SS G_CDS: 0.37 Total: 20.69 kcal Atomic # 6 Polarization: -10.09 SS G_CDS: 7.10 Total: -3.00 kcal Atomic # 7 Polarization: -96.86 SS G_CDS: -5.95 Total: -102.81 kcal Atomic # 8 Polarization: -22.74 SS G_CDS: -1.67 Total: -24.41 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 2.03 Total: 44.51 kcal Total: -66.89 1.88 -65.01 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882375423.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.335 kcal (2) G-P(sol) polarization free energy of solvation -66.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.015 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds