Wall clock time and date at job start Wed Apr 1 2020 04:38:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21281 * 120.00383 * 2 1 4 4 N 1.34779 * 119.99714 * 180.02562 * 2 1 3 5 5 C 1.46508 * 119.99889 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46986 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.46990 * 304.99853 * 6 5 4 8 8 C 1.53001 * 109.46907 * 184.99482 * 6 5 4 9 9 C 1.50701 * 109.46953 * 160.90570 * 8 6 5 10 10 O 1.21276 * 119.99907 * 350.82129 * 9 8 6 11 11 N 1.34775 * 119.99748 * 170.82690 * 9 8 6 12 12 C 1.39271 * 119.99436 * 182.93210 * 11 9 8 13 13 C 1.39669 * 119.57856 * 341.07244 * 12 11 9 14 14 C 1.38658 * 119.49424 * 180.02562 * 13 12 11 15 15 C 1.38338 * 118.67110 * 0.02562 * 14 13 12 16 16 C 1.40581 * 119.13350 * 0.02562 * 15 14 13 17 17 C 1.41332 * 119.79125 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99924 * 0.02562 * 17 16 15 19 19 C 1.40030 * 119.99978 * 179.97438 * 17 16 15 20 20 N 1.30744 * 120.00144 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99863 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47422 * 59.99810 * 21 19 17 23 23 H 1.48495 * 109.47232 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46917 * 299.99959 * 21 19 17 25 25 N 1.31910 * 119.56888 * 160.80531 * 12 11 9 26 26 C 1.53002 * 109.47182 * 64.99983 * 6 5 4 27 27 C 1.53000 * 109.46890 * 191.54095 * 26 6 5 28 28 C 1.53002 * 109.47081 * 68.93717 * 27 26 6 29 29 C 1.53000 * 109.47194 * 188.93335 * 27 26 6 30 30 H 1.09004 * 109.47369 * 239.99648 * 1 2 3 31 31 H 1.08993 * 109.46890 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.47217 * 119.99976 * 1 2 3 33 33 H 0.97004 * 120.00531 * 359.97438 * 4 2 1 34 34 H 1.08997 * 109.47247 * 59.99856 * 5 4 2 35 35 H 1.09004 * 109.46449 * 299.99669 * 5 4 2 36 36 H 1.08996 * 109.47672 * 280.90940 * 8 6 5 37 37 H 1.09003 * 109.46977 * 40.91162 * 8 6 5 38 38 H 0.96996 * 120.00530 * 2.92731 * 11 9 8 39 39 H 1.07999 * 120.25346 * 359.97438 * 13 12 11 40 40 H 1.07999 * 120.66201 * 180.02562 * 14 13 12 41 41 H 1.08002 * 120.43594 * 179.97438 * 15 14 13 42 42 H 0.97001 * 119.99969 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.47064 * 311.53627 * 26 6 5 44 44 H 1.08994 * 109.47257 * 71.53743 * 26 6 5 45 45 H 1.08997 * 109.47414 * 308.94300 * 27 26 6 46 46 H 1.09011 * 109.47062 * 60.00244 * 28 27 26 47 47 H 1.09000 * 109.47517 * 179.97438 * 28 27 26 48 48 H 1.08998 * 109.47587 * 300.00024 * 28 27 26 49 49 H 1.09003 * 109.46302 * 60.00524 * 29 27 26 50 50 H 1.08997 * 109.47121 * 179.97438 * 29 27 26 51 51 H 1.08997 * 109.47728 * 300.00773 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6459 -1.1673 0.0000 6 6 4.1558 -2.6098 -0.0014 7 1 3.7208 -3.1498 0.8397 8 6 5.6806 -2.6118 0.1248 9 6 6.1445 -3.9685 0.5888 10 8 5.3348 -4.7930 0.9570 11 7 7.4591 -4.2656 0.5946 12 6 7.8834 -5.5393 0.9651 13 6 7.0264 -6.3665 1.6945 14 6 7.4509 -7.6340 2.0629 15 6 8.7201 -8.0423 1.6939 16 6 9.5359 -7.1628 0.9609 17 6 10.8348 -7.5658 0.5762 18 1 11.1976 -8.5468 0.8451 19 6 11.6508 -6.6934 -0.1545 20 7 11.2114 -5.5060 -0.4805 21 14 13.3673 -7.2263 -0.6636 22 1 13.2764 -8.4354 -1.5210 23 1 14.0218 -6.1297 -1.4213 24 1 14.1685 -7.5374 0.5474 25 7 9.0877 -5.9508 0.6180 26 6 3.7515 -3.2924 -1.3096 27 6 4.0018 -4.7977 -1.1980 28 6 3.0129 -5.4066 -0.2019 29 6 3.8110 -5.4495 -2.5690 30 1 -0.3634 -0.5139 0.8900 31 1 -0.3633 1.0276 0.0005 32 1 -0.3634 -0.5139 -0.8900 33 1 1.6958 -2.0073 -0.0005 34 1 4.0089 -0.6541 0.8905 35 1 4.0095 -0.6529 -0.8895 36 1 6.1258 -2.3875 -0.8445 37 1 5.9863 -1.8563 0.8486 38 1 8.1096 -3.5924 0.3407 39 1 6.0409 -6.0212 1.9701 40 1 6.8036 -8.2895 2.6266 41 1 9.0800 -9.0235 1.9661 42 1 11.7768 -4.9016 -0.9863 43 1 2.6935 -3.1133 -1.5011 44 1 4.3431 -2.8855 -2.1297 45 1 5.0203 -4.9720 -0.8513 46 1 1.9942 -5.2324 -0.5486 47 1 3.1908 -6.4790 -0.1226 48 1 3.1487 -4.9423 0.7749 49 1 4.5156 -5.0157 -3.2786 50 1 3.9898 -6.5218 -2.4896 51 1 2.7925 -5.2752 -2.9157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000882471901.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:08 Heat of formation + Delta-G solvation = -44.291457 kcal Electronic energy + Delta-G solvation = -31097.478967 eV Core-core repulsion = 26996.711566 eV Total energy + Delta-G solvation = -4100.767402 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.50695 -39.69566 -38.19008 -36.91549 -34.92819 -34.22446 -33.34835 -32.82432 -30.43321 -30.31754 -29.32525 -27.30710 -26.90049 -26.03781 -25.37912 -22.32601 -21.60748 -21.09432 -20.66395 -19.73381 -19.54158 -17.58999 -17.25046 -17.05457 -16.41972 -16.23582 -15.90275 -15.56947 -14.91459 -14.51790 -14.46798 -14.22706 -14.05342 -13.74025 -13.58376 -13.45293 -13.03799 -12.98262 -12.90948 -12.83256 -12.39469 -12.34745 -12.14689 -12.00889 -11.89032 -11.54190 -11.35002 -11.25729 -11.20717 -11.12476 -10.93510 -10.67950 -10.38474 -10.31903 -10.23401 -10.13881 -10.12682 -9.63304 -9.28331 -9.21501 -8.78814 -8.05711 -7.70889 -7.13832 -6.44032 -4.53465 2.41543 2.46763 2.88276 2.96260 3.05848 3.08487 3.21323 3.33649 3.59633 3.92539 4.47153 4.60793 4.63727 4.73134 4.76040 4.94829 5.03634 5.09336 5.23255 5.29596 5.35277 5.40659 5.43588 5.50253 5.57595 5.68628 5.79814 5.85998 5.89612 5.91816 5.96930 6.09632 6.13021 6.15002 6.21189 6.25689 6.39945 6.46575 6.65004 6.74652 6.76239 6.79591 6.88377 7.11618 7.26118 7.45792 7.48712 7.82540 7.89557 7.98706 8.11762 8.27329 8.63195 8.69360 8.94213 10.02261 10.28375 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.002380 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.316042 B =11762.181690 C =12310.093016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.508 3.492 3 O -0.550 6.550 4 N -0.728 5.728 5 C 0.122 3.878 6 C -0.092 4.092 7 H 0.100 0.900 8 C -0.134 4.134 9 C 0.510 3.490 10 O -0.506 6.506 11 N -0.645 5.645 12 C 0.354 3.646 13 C -0.316 4.316 14 C -0.052 4.052 15 C -0.289 4.289 16 C 0.278 3.722 17 C -0.435 4.435 18 H 0.084 0.916 19 C 0.071 3.929 20 N -0.723 5.723 21 Si 0.907 3.093 22 H -0.265 1.265 23 H -0.278 1.278 24 H -0.265 1.265 25 N -0.507 5.507 26 C -0.107 4.107 27 C -0.110 4.110 28 C -0.129 4.129 29 C -0.147 4.147 30 H 0.087 0.913 31 H 0.091 0.909 32 H 0.087 0.913 33 H 0.402 0.598 34 H 0.069 0.931 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.407 0.593 39 H 0.142 0.858 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.271 0.729 43 H 0.058 0.942 44 H 0.060 0.940 45 H 0.097 0.903 46 H 0.032 0.968 47 H 0.047 0.953 48 H 0.068 0.932 49 H 0.047 0.953 50 H 0.052 0.948 51 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.907 7.776 -2.054 17.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.295 3.705 3 O -0.428 6.428 4 N -0.380 5.380 5 C -0.001 4.001 6 C -0.111 4.111 7 H 0.118 0.882 8 C -0.175 4.175 9 C 0.297 3.703 10 O -0.383 6.383 11 N -0.289 5.289 12 C 0.119 3.881 13 C -0.340 4.340 14 C -0.077 4.077 15 C -0.312 4.312 16 C 0.152 3.848 17 C -0.467 4.467 18 H 0.102 0.898 19 C -0.153 4.153 20 N -0.345 5.345 21 Si 0.731 3.269 22 H -0.190 1.190 23 H -0.203 1.203 24 H -0.190 1.190 25 N -0.225 5.225 26 C -0.144 4.144 27 C -0.127 4.127 28 C -0.186 4.186 29 C -0.204 4.204 30 H 0.106 0.894 31 H 0.109 0.891 32 H 0.106 0.894 33 H 0.237 0.763 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.114 0.886 37 H 0.116 0.884 38 H 0.242 0.758 39 H 0.159 0.841 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.079 0.921 45 H 0.115 0.885 46 H 0.052 0.948 47 H 0.066 0.934 48 H 0.086 0.914 49 H 0.067 0.933 50 H 0.071 0.929 51 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.450 8.725 -2.413 17.907 hybrid contribution 0.518 -0.944 -0.040 1.077 sum -14.932 7.781 -2.454 17.016 Atomic orbital electron populations 1.21921 0.91812 1.05459 1.04273 1.20805 0.90613 0.83484 0.75629 1.90729 1.70938 1.31486 1.49628 1.46083 1.07641 1.08800 1.75494 1.21435 0.79515 0.96749 1.02430 1.21327 0.94294 0.94552 1.00909 0.88180 1.21667 0.96422 0.95553 1.03836 1.20398 0.81910 0.89518 0.78505 1.90566 1.52940 1.49138 1.45634 1.43254 1.07545 1.12969 1.65092 1.18558 0.92215 0.84621 0.92681 1.21919 1.03518 0.96878 1.11734 1.20844 0.94922 0.95210 0.96718 1.21722 0.96646 1.01365 1.11425 1.18163 0.92568 0.85889 0.88206 1.19526 0.96782 1.01039 1.29398 0.89798 1.26028 0.99992 0.94496 0.94803 1.70098 1.35159 1.05200 1.24019 0.86403 0.81763 0.79237 0.79482 1.18985 1.20307 1.18968 1.68052 1.11904 1.17725 1.24866 1.21745 1.00818 0.95914 0.95931 1.21508 1.03162 0.93284 0.94796 1.21704 0.96348 1.00812 0.99729 1.21861 1.00491 1.00805 0.97266 0.89391 0.89058 0.89431 0.76276 0.91314 0.91342 0.88632 0.88408 0.75801 0.84083 0.88501 0.88392 0.91786 0.92291 0.92134 0.88537 0.94845 0.93390 0.91356 0.93347 0.92930 0.93612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.96 10.32 36.00 0.37 -0.59 16 2 C 0.51 4.91 7.94 -10.99 -0.09 4.83 16 3 O -0.55 -7.90 17.09 5.56 0.09 -7.80 16 4 N -0.73 -5.92 5.16 -60.29 -0.31 -6.23 16 5 C 0.12 1.12 5.02 -4.04 -0.02 1.10 16 6 C -0.09 -0.88 1.86 -90.62 -0.17 -1.05 16 7 H 0.10 1.07 5.58 -51.93 -0.29 0.78 16 8 C -0.13 -1.42 5.22 -27.88 -0.15 -1.56 16 9 C 0.51 7.82 6.05 -10.99 -0.07 7.75 16 10 O -0.51 -8.63 7.35 5.56 0.04 -8.59 16 11 N -0.64 -11.84 5.41 -11.40 -0.06 -11.91 16 12 C 0.35 8.29 7.53 -154.97 -1.17 7.12 16 13 C -0.32 -7.27 8.92 -38.89 -0.35 -7.62 16 14 C -0.05 -1.20 10.15 -39.39 -0.40 -1.60 16 15 C -0.29 -7.13 9.83 -38.66 -0.38 -7.51 16 16 C 0.28 7.53 6.55 -85.00 -0.56 6.97 16 17 C -0.44 -11.48 9.14 -37.73 -0.34 -11.82 16 18 H 0.08 2.07 7.85 -52.49 -0.41 1.66 16 19 C 0.07 1.78 5.50 -17.34 -0.10 1.68 16 20 N -0.72 -18.47 11.46 55.55 0.64 -17.84 16 21 Si 0.91 18.28 29.56 -169.99 -5.02 13.26 16 22 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 23 H -0.28 -5.46 7.11 56.52 0.40 -5.06 16 24 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 25 N -0.51 -13.41 7.89 -10.25 -0.08 -13.49 16 26 C -0.11 -1.05 4.07 -26.73 -0.11 -1.16 16 27 C -0.11 -1.39 2.35 -90.62 -0.21 -1.60 16 28 C -0.13 -1.60 8.08 37.16 0.30 -1.30 16 29 C -0.15 -1.80 9.18 37.16 0.34 -1.46 16 30 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 31 H 0.09 0.53 8.12 -51.93 -0.42 0.11 16 32 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.40 2.43 7.69 -40.82 -0.31 2.12 16 34 H 0.07 0.68 8.04 -51.93 -0.42 0.26 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.10 0.91 7.82 -51.93 -0.41 0.50 16 37 H 0.10 0.87 7.92 -51.93 -0.41 0.46 16 38 H 0.41 6.83 8.82 -40.82 -0.36 6.47 16 39 H 0.14 3.11 5.06 -53.45 -0.27 2.84 16 40 H 0.10 1.93 8.06 -52.49 -0.42 1.51 16 41 H 0.10 2.24 8.06 -52.49 -0.42 1.81 16 42 H 0.27 6.30 8.29 -40.82 -0.34 5.96 16 43 H 0.06 0.50 6.96 -51.93 -0.36 0.14 16 44 H 0.06 0.60 7.87 -51.93 -0.41 0.19 16 45 H 0.10 1.54 4.18 -51.93 -0.22 1.33 16 46 H 0.03 0.34 8.14 -51.92 -0.42 -0.08 16 47 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.07 0.89 5.30 -51.93 -0.28 0.61 16 49 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 50 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 51 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 403.68 15.07 6.08 6.08 Total: -1.00 -32.06 403.68 -9.64 -41.70 By element: Atomic # 1 Polarization: 20.57 SS G_CDS: -7.93 Total: 12.64 kcal Atomic # 6 Polarization: -4.74 SS G_CDS: -3.09 Total: -7.82 kcal Atomic # 7 Polarization: -49.64 SS G_CDS: 0.18 Total: -49.46 kcal Atomic # 8 Polarization: -16.53 SS G_CDS: 0.14 Total: -16.39 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.02 Total: 13.26 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -32.06 -9.64 -41.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471901.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.595 kcal (2) G-P(sol) polarization free energy of solvation -32.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds