Wall clock time and date at job start Wed Apr 1 2020 04:38:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 O 1.21281 * 120.00383 * 2 1 4 4 N 1.34779 * 119.99714 * 180.02562 * 2 1 3 5 5 C 1.46508 * 119.99889 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46986 * 180.02562 * 5 4 2 7 7 H 1.09002 * 109.46990 * 304.99853 * 6 5 4 8 8 C 1.53001 * 109.46907 * 184.99482 * 6 5 4 9 9 C 1.50701 * 109.46953 * 160.90570 * 8 6 5 10 10 O 1.21276 * 119.99907 * 350.82129 * 9 8 6 11 11 N 1.34775 * 119.99748 * 170.82690 * 9 8 6 12 12 C 1.39271 * 119.99436 * 182.93210 * 11 9 8 13 13 C 1.39669 * 119.57856 * 341.07244 * 12 11 9 14 14 C 1.38658 * 119.49424 * 180.02562 * 13 12 11 15 15 C 1.38338 * 118.67110 * 0.02562 * 14 13 12 16 16 C 1.40581 * 119.13350 * 0.02562 * 15 14 13 17 17 C 1.41332 * 119.79125 * 180.02562 * 16 15 14 18 18 H 1.07999 * 119.99924 * 0.02562 * 17 16 15 19 19 C 1.40030 * 119.99978 * 179.97438 * 17 16 15 20 20 N 1.30744 * 120.00144 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99863 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47422 * 59.99810 * 21 19 17 23 23 H 1.48495 * 109.47232 * 180.02562 * 21 19 17 24 24 H 1.48503 * 109.46917 * 299.99959 * 21 19 17 25 25 N 1.31910 * 119.56888 * 160.80531 * 12 11 9 26 26 C 1.53002 * 109.47182 * 64.99983 * 6 5 4 27 27 C 1.53000 * 109.46890 * 191.54095 * 26 6 5 28 28 C 1.53002 * 109.47081 * 68.93717 * 27 26 6 29 29 C 1.53000 * 109.47194 * 188.93335 * 27 26 6 30 30 H 1.09004 * 109.47369 * 239.99648 * 1 2 3 31 31 H 1.08993 * 109.46890 * 359.97438 * 1 2 3 32 32 H 1.09006 * 109.47217 * 119.99976 * 1 2 3 33 33 H 0.97004 * 120.00531 * 359.97438 * 4 2 1 34 34 H 1.08997 * 109.47247 * 59.99856 * 5 4 2 35 35 H 1.09004 * 109.46449 * 299.99669 * 5 4 2 36 36 H 1.08996 * 109.47672 * 280.90940 * 8 6 5 37 37 H 1.09003 * 109.46977 * 40.91162 * 8 6 5 38 38 H 0.96996 * 120.00530 * 2.92731 * 11 9 8 39 39 H 1.07999 * 120.25346 * 359.97438 * 13 12 11 40 40 H 1.07999 * 120.66201 * 180.02562 * 14 13 12 41 41 H 1.08002 * 120.43594 * 179.97438 * 15 14 13 42 42 H 0.97001 * 119.99969 * 179.97438 * 20 19 17 43 43 H 1.09001 * 109.47064 * 311.53627 * 26 6 5 44 44 H 1.08994 * 109.47257 * 71.53743 * 26 6 5 45 45 H 1.08997 * 109.47414 * 308.94300 * 27 26 6 46 46 H 1.09011 * 109.47062 * 60.00244 * 28 27 26 47 47 H 1.09000 * 109.47517 * 179.97438 * 28 27 26 48 48 H 1.08998 * 109.47587 * 300.00024 * 28 27 26 49 49 H 1.09003 * 109.46302 * 60.00524 * 29 27 26 50 50 H 1.08997 * 109.47121 * 179.97438 * 29 27 26 51 51 H 1.08997 * 109.47728 * 300.00773 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1808 -1.1673 -0.0005 5 6 3.6459 -1.1673 0.0000 6 6 4.1558 -2.6098 -0.0014 7 1 3.7208 -3.1498 0.8397 8 6 5.6806 -2.6118 0.1248 9 6 6.1445 -3.9685 0.5888 10 8 5.3348 -4.7930 0.9570 11 7 7.4591 -4.2656 0.5946 12 6 7.8834 -5.5393 0.9651 13 6 7.0264 -6.3665 1.6945 14 6 7.4509 -7.6340 2.0629 15 6 8.7201 -8.0423 1.6939 16 6 9.5359 -7.1628 0.9609 17 6 10.8348 -7.5658 0.5762 18 1 11.1976 -8.5468 0.8451 19 6 11.6508 -6.6934 -0.1545 20 7 11.2114 -5.5060 -0.4805 21 14 13.3673 -7.2263 -0.6636 22 1 13.2764 -8.4354 -1.5210 23 1 14.0218 -6.1297 -1.4213 24 1 14.1685 -7.5374 0.5474 25 7 9.0877 -5.9508 0.6180 26 6 3.7515 -3.2924 -1.3096 27 6 4.0018 -4.7977 -1.1980 28 6 3.0129 -5.4066 -0.2019 29 6 3.8110 -5.4495 -2.5690 30 1 -0.3634 -0.5139 0.8900 31 1 -0.3633 1.0276 0.0005 32 1 -0.3634 -0.5139 -0.8900 33 1 1.6958 -2.0073 -0.0005 34 1 4.0089 -0.6541 0.8905 35 1 4.0095 -0.6529 -0.8895 36 1 6.1258 -2.3875 -0.8445 37 1 5.9863 -1.8563 0.8486 38 1 8.1096 -3.5924 0.3407 39 1 6.0409 -6.0212 1.9701 40 1 6.8036 -8.2895 2.6266 41 1 9.0800 -9.0235 1.9661 42 1 11.7768 -4.9016 -0.9863 43 1 2.6935 -3.1133 -1.5011 44 1 4.3431 -2.8855 -2.1297 45 1 5.0203 -4.9720 -0.8513 46 1 1.9942 -5.2324 -0.5486 47 1 3.1908 -6.4790 -0.1226 48 1 3.1487 -4.9423 0.7749 49 1 4.5156 -5.0157 -3.2786 50 1 3.9898 -6.5218 -2.4896 51 1 2.7925 -5.2752 -2.9157 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000882471901.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:07 Heat of formation + Delta-G solvation = -64.095929 kcal Electronic energy + Delta-G solvation = -31098.337754 eV Core-core repulsion = 26996.711566 eV Total energy + Delta-G solvation = -4101.626188 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.75131 -40.59404 -39.75829 -38.07834 -35.98338 -35.66897 -35.04540 -33.76120 -32.28719 -31.35061 -30.60149 -28.42884 -27.90093 -27.24942 -26.75251 -23.78845 -23.44567 -22.06135 -21.66716 -21.01962 -20.48926 -19.32518 -18.65838 -17.92075 -17.64079 -17.36117 -16.97819 -16.57032 -16.37642 -16.21173 -15.67697 -15.57169 -15.11874 -14.99829 -14.65126 -14.50782 -14.32125 -14.17779 -14.00597 -13.77652 -13.67814 -13.39937 -13.10003 -12.97397 -12.90094 -12.86930 -12.79475 -12.67926 -12.57517 -12.41123 -12.22988 -12.11089 -11.86272 -11.64565 -11.29638 -11.24048 -11.08415 -10.93711 -10.79183 -10.25372 -10.03194 -9.92818 -9.59962 -8.92635 -8.29190 -6.49445 0.80008 1.12944 1.41600 1.52709 1.54928 1.70666 1.83802 2.10408 2.23758 2.45521 2.89242 3.55677 3.79505 3.88410 3.94145 3.98653 4.04737 4.27084 4.33342 4.39445 4.47810 4.54125 4.57614 4.60785 4.69032 4.72302 4.73951 4.82180 4.85168 4.90323 4.97656 4.99411 5.01414 5.03873 5.09653 5.11940 5.15897 5.24780 5.25082 5.33940 5.47831 5.51913 5.63337 5.66271 5.76320 5.76943 5.99165 6.09456 6.32380 6.58319 6.62508 6.81257 6.97824 7.31486 7.33346 8.14631 8.45424 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016590 B = 0.002380 C = 0.002274 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1687.316042 B =11762.181690 C =12310.093016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.502 3.498 3 O -0.604 6.604 4 N -0.718 5.718 5 C 0.129 3.871 6 C -0.079 4.079 7 H 0.093 0.907 8 C -0.126 4.126 9 C 0.509 3.491 10 O -0.520 6.520 11 N -0.648 5.648 12 C 0.347 3.653 13 C -0.324 4.324 14 C -0.053 4.053 15 C -0.313 4.313 16 C 0.245 3.755 17 C -0.470 4.470 18 H 0.088 0.912 19 C 0.027 3.973 20 N -0.752 5.752 21 Si 0.985 3.015 22 H -0.262 1.262 23 H -0.267 1.267 24 H -0.260 1.260 25 N -0.535 5.535 26 C -0.100 4.100 27 C -0.109 4.109 28 C -0.123 4.123 29 C -0.146 4.146 30 H 0.109 0.891 31 H 0.086 0.914 32 H 0.111 0.889 33 H 0.415 0.585 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.111 0.889 37 H 0.120 0.880 38 H 0.413 0.587 39 H 0.152 0.848 40 H 0.127 0.873 41 H 0.107 0.893 42 H 0.279 0.721 43 H 0.080 0.920 44 H 0.064 0.936 45 H 0.061 0.939 46 H 0.059 0.941 47 H 0.022 0.978 48 H 0.062 0.938 49 H 0.046 0.954 50 H 0.032 0.968 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.344 8.669 -2.711 19.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.291 3.709 3 O -0.486 6.486 4 N -0.370 5.370 5 C 0.004 3.996 6 C -0.098 4.098 7 H 0.111 0.889 8 C -0.166 4.166 9 C 0.299 3.701 10 O -0.397 6.397 11 N -0.293 5.293 12 C 0.112 3.888 13 C -0.348 4.348 14 C -0.077 4.077 15 C -0.336 4.336 16 C 0.118 3.882 17 C -0.502 4.502 18 H 0.106 0.894 19 C -0.195 4.195 20 N -0.375 5.375 21 Si 0.805 3.195 22 H -0.186 1.186 23 H -0.192 1.192 24 H -0.185 1.185 25 N -0.254 5.254 26 C -0.138 4.138 27 C -0.128 4.128 28 C -0.180 4.180 29 C -0.203 4.203 30 H 0.127 0.873 31 H 0.105 0.895 32 H 0.129 0.871 33 H 0.252 0.748 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.130 0.870 37 H 0.138 0.862 38 H 0.249 0.751 39 H 0.169 0.831 40 H 0.144 0.856 41 H 0.125 0.875 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.082 0.918 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.041 0.959 48 H 0.080 0.920 49 H 0.065 0.935 50 H 0.052 0.948 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -16.944 9.603 -3.064 19.715 hybrid contribution 0.816 -1.220 0.185 1.479 sum -16.127 8.383 -2.879 18.402 Atomic orbital electron populations 1.21932 0.88434 1.05919 1.06388 1.21557 0.92255 0.82787 0.74290 1.90709 1.72274 1.33341 1.52256 1.46023 1.07242 1.09221 1.74541 1.21279 0.80289 0.95876 1.02108 1.21183 0.93302 0.94763 1.00509 0.88872 1.21725 0.97226 0.92585 1.05073 1.21267 0.80501 0.91016 0.77338 1.90535 1.52946 1.50186 1.46044 1.43374 1.08947 1.11351 1.65635 1.18965 0.91499 0.86436 0.91912 1.22212 1.03896 0.97104 1.11598 1.21213 0.94675 0.95676 0.96162 1.21869 0.97473 1.01804 1.12437 1.18653 0.93591 0.86856 0.89094 1.19884 0.97504 1.01887 1.30875 0.89422 1.26908 1.04024 0.94283 0.94261 1.70177 1.36879 1.06151 1.24249 0.85223 0.76156 0.78954 0.79121 1.18613 1.19166 1.18451 1.68079 1.13360 1.17962 1.26019 1.21695 1.02285 0.93654 0.96117 1.21421 1.01126 0.95414 0.94804 1.21641 0.97816 0.99011 0.99547 1.21848 1.01806 0.99514 0.97141 0.87255 0.89528 0.87088 0.74764 0.91880 0.91567 0.87036 0.86160 0.75096 0.83074 0.85556 0.87486 0.91074 0.90134 0.91775 0.92129 0.92157 0.95903 0.91951 0.93510 0.94829 0.91378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 10.32 71.23 0.74 -0.61 16 2 C 0.50 8.68 7.94 87.66 0.70 9.38 16 3 O -0.60 -16.85 17.09 -3.03 -0.05 -16.91 16 4 N -0.72 -9.73 5.16 -463.04 -2.39 -12.12 16 5 C 0.13 2.06 5.02 86.38 0.43 2.49 16 6 C -0.08 -1.32 1.86 -10.79 -0.02 -1.34 16 7 H 0.09 1.78 5.58 -2.39 -0.01 1.77 16 8 C -0.13 -2.43 5.22 29.85 0.16 -2.28 16 9 C 0.51 15.37 6.05 87.66 0.53 15.90 16 10 O -0.52 -17.61 7.35 -3.02 -0.02 -17.63 16 11 N -0.65 -24.05 5.41 -308.36 -1.67 -25.72 16 12 C 0.35 16.68 7.53 133.25 1.00 17.69 16 13 C -0.32 -15.12 8.92 22.72 0.20 -14.92 16 14 C -0.05 -2.45 10.15 22.39 0.23 -2.22 16 15 C -0.31 -15.94 9.83 22.87 0.22 -15.72 16 16 C 0.24 13.73 6.55 40.19 0.26 14.00 16 17 C -0.47 -25.55 9.14 23.47 0.21 -25.34 16 18 H 0.09 4.48 7.85 -2.91 -0.02 4.45 16 19 C 0.03 1.36 5.50 85.29 0.47 1.83 16 20 N -0.75 -39.21 11.46 21.84 0.25 -38.96 16 21 Si 0.99 37.70 29.56 68.60 2.03 39.72 16 22 H -0.26 -9.78 7.11 99.48 0.71 -9.07 16 23 H -0.27 -9.65 7.11 99.48 0.71 -8.94 16 24 H -0.26 -9.67 7.11 99.48 0.71 -8.96 16 25 N -0.53 -29.25 7.89 -186.35 -1.47 -30.72 16 26 C -0.10 -1.72 4.07 30.59 0.12 -1.60 16 27 C -0.11 -2.64 2.35 -10.79 -0.03 -2.66 16 28 C -0.12 -2.90 8.08 71.98 0.58 -2.32 16 29 C -0.15 -3.41 9.18 71.98 0.66 -2.75 16 30 H 0.11 0.44 8.14 -2.38 -0.02 0.42 16 31 H 0.09 0.82 8.12 -2.39 -0.02 0.80 16 32 H 0.11 0.40 8.14 -2.38 -0.02 0.38 16 33 H 0.42 3.54 7.69 -92.71 -0.71 2.83 16 34 H 0.06 1.12 8.04 -2.39 -0.02 1.10 16 35 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 36 H 0.11 1.88 7.82 -2.39 -0.02 1.86 16 37 H 0.12 1.86 7.92 -2.39 -0.02 1.85 16 38 H 0.41 14.02 8.82 -92.71 -0.82 13.20 16 39 H 0.15 6.70 5.06 -18.17 -0.09 6.61 16 40 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 41 H 0.11 5.05 8.06 -2.91 -0.02 5.02 16 42 H 0.28 13.07 8.29 -92.71 -0.77 12.30 16 43 H 0.08 1.07 6.96 -2.39 -0.02 1.05 16 44 H 0.06 1.10 7.87 -2.39 -0.02 1.08 16 45 H 0.06 1.93 4.18 -2.39 -0.01 1.92 16 46 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 47 H 0.02 0.63 8.14 -2.39 -0.02 0.61 16 48 H 0.06 1.54 5.30 -2.39 -0.01 1.52 16 49 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.03 0.89 8.14 -2.39 -0.02 0.87 16 51 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 Total: -1.00 -73.22 403.68 2.51 -70.71 By element: Atomic # 1 Polarization: 42.74 SS G_CDS: -0.64 Total: 42.10 kcal Atomic # 6 Polarization: -16.96 SS G_CDS: 6.48 Total: -10.48 kcal Atomic # 7 Polarization: -102.24 SS G_CDS: -5.28 Total: -107.52 kcal Atomic # 8 Polarization: -34.46 SS G_CDS: -0.07 Total: -34.54 kcal Atomic # 14 Polarization: 37.70 SS G_CDS: 2.03 Total: 39.72 kcal Total: -73.22 2.51 -70.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000882471901.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.614 kcal (2) G-P(sol) polarization free energy of solvation -73.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds