Wall clock time and date at job start Wed Apr 1 2020 04:21:37
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.47021 * 2 1
4 4 C 1.53005 * 109.46784 * 239.99992 * 2 1 3
5 5 C 1.53004 * 109.46980 * 120.00450 * 2 1 3
6 6 C 1.52998 * 109.47242 * 59.99972 * 5 2 1
7 7 C 1.53001 * 109.46898 * 179.97438 * 6 5 2
8 8 C 1.52998 * 109.47267 * 179.97438 * 7 6 5
9 9 N 1.46497 * 109.47452 * 180.02562 * 8 7 6
10 10 C 1.34775 * 119.99944 * 179.97438 * 9 8 7
11 11 O 1.21348 * 120.00209 * 0.02562 * 10 9 8
12 12 C 1.49371 * 119.99920 * 179.97438 * 10 9 8
13 13 O 1.21362 * 119.99781 * 0.02562 * 12 10 9
14 14 N 1.34775 * 119.99920 * 179.97438 * 12 10 9
15 15 C 1.39117 * 119.99568 * 185.60784 * 14 12 10
16 16 C 1.39708 * 119.57852 * 18.94636 * 15 14 12
17 17 C 1.38649 * 119.49082 * 180.02562 * 16 15 14
18 18 C 1.38354 * 118.67491 * 359.72950 * 17 16 15
19 19 C 1.40597 * 119.12796 * 0.53083 * 18 17 16
20 20 C 1.41346 * 119.78200 * 179.72961 * 19 18 17
21 21 H 1.08000 * 119.99622 * 7.00235 * 20 19 18
22 22 C 1.40024 * 119.99818 * 187.00431 * 20 19 18
23 23 N 1.30740 * 119.99814 * 181.90660 * 22 20 19
24 24 Si 1.86797 * 120.00331 * 1.90544 * 22 20 19
25 25 H 1.48499 * 109.47090 * 179.97438 * 24 22 20
26 26 H 1.48500 * 109.47238 * 300.00224 * 24 22 20
27 27 H 1.48506 * 109.46836 * 59.99940 * 24 22 20
28 28 N 1.31931 * 119.57822 * 198.96091 * 15 14 12
29 29 H 1.08996 * 109.47166 * 299.99774 * 1 2 3
30 30 H 1.09001 * 109.47316 * 60.00243 * 1 2 3
31 31 H 1.09001 * 109.47554 * 179.97438 * 1 2 3
32 32 H 1.09004 * 109.46993 * 179.97438 * 3 2 1
33 33 H 1.08996 * 109.47565 * 300.00043 * 3 2 1
34 34 H 1.09002 * 109.46888 * 60.00537 * 3 2 1
35 35 H 1.08992 * 109.47437 * 299.99630 * 4 2 1
36 36 H 1.08996 * 109.47028 * 60.00431 * 4 2 1
37 37 H 1.09004 * 109.46794 * 180.02562 * 4 2 1
38 38 H 1.08998 * 109.46741 * 299.99406 * 5 2 1
39 39 H 1.09000 * 109.46558 * 179.97438 * 5 2 1
40 40 H 1.08996 * 109.47201 * 60.00042 * 6 5 2
41 41 H 1.09004 * 109.47128 * 299.99925 * 6 5 2
42 42 H 1.08996 * 109.47120 * 60.00041 * 7 6 5
43 43 H 1.09004 * 109.47209 * 299.99923 * 7 6 5
44 44 H 1.09002 * 109.46888 * 59.99575 * 8 7 6
45 45 H 1.09004 * 109.46993 * 300.00117 * 8 7 6
46 46 H 0.97001 * 119.99523 * 359.97438 * 9 8 7
47 47 H 0.96991 * 120.00352 * 5.61391 * 14 12 10
48 48 H 1.08000 * 120.25769 * 359.97438 * 16 15 14
49 49 H 1.08002 * 120.66570 * 180.02562 * 17 16 15
50 50 H 1.07993 * 120.43559 * 180.28061 * 18 17 16
51 51 H 0.97007 * 120.00076 * 354.82632 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0399 -0.7213 -1.2493
5 6 2.0400 -0.7214 1.2492
6 6 1.5300 -2.1639 1.2491
7 6 2.0405 -2.8853 2.4980
8 6 1.5300 -4.3276 2.4984
9 7 2.0183 -5.0183 3.6945
10 6 1.6919 -6.3083 3.9082
11 8 0.9939 -6.8979 3.1096
12 6 2.1902 -7.0127 5.1275
13 8 2.8887 -6.4232 5.9259
14 7 1.8634 -8.3026 5.3414
15 6 2.2285 -8.9244 6.5311
16 6 2.5650 -8.1459 7.6413
17 6 2.9291 -8.7675 8.8259
18 6 2.9424 -10.1502 8.8732
19 6 2.5987 -10.8778 7.7202
20 6 2.6133 -12.2908 7.7514
21 1 2.7766 -12.8086 8.6850
22 6 2.4160 -13.0192 6.5719
23 7 2.3923 -14.3259 6.6068
24 14 2.1867 -12.1239 4.9485
25 1 1.9981 -13.1151 3.8590
26 1 0.9921 -11.2458 5.0319
27 1 3.3885 -11.2991 4.6641
28 7 2.2529 -10.2419 6.5965
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3634 -1.0276 -0.0005
32 1 3.1300 1.4425 0.0005
33 1 1.6767 1.9564 -0.8899
34 1 1.6767 1.9563 0.8901
35 1 1.6767 -1.7489 -1.2493
36 1 1.6766 -0.2074 -2.1392
37 1 3.1300 -0.7217 -1.2491
38 1 1.6767 -0.2075 2.1392
39 1 3.1300 -0.7217 1.2489
40 1 1.8933 -2.6776 0.3592
41 1 0.4399 -2.1638 1.2491
42 1 1.6775 -2.3717 3.3882
43 1 3.1305 -2.8853 2.4976
44 1 1.8926 -4.8415 1.6081
45 1 0.4400 -4.3272 2.4990
46 1 2.5766 -4.5471 4.3326
47 1 1.3737 -8.7973 4.6660
48 1 2.5424 -7.0680 7.5770
49 1 3.1924 -8.1842 9.6958
50 1 3.2172 -10.6639 9.7825
51 1 2.5857 -14.7926 7.4350
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000889903099.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:21:37
Heat of formation + Delta-G solvation = -71.992671 kcal
Electronic energy + Delta-G solvation = -29280.650593 eV
Core-core repulsion = 25178.681976 eV
Total energy + Delta-G solvation = -4101.968616 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-40.87555 -39.31078 -38.68977 -37.96699 -36.10784 -34.76688 -33.57536 -33.10971
-31.20535 -29.79337 -28.88468 -27.72857 -27.71364 -25.90765 -25.14312 -23.57627
-21.93369 -21.82801 -21.42842 -19.93148 -19.05944 -18.79588 -18.17850 -16.99846
-16.50109 -16.36312 -15.79273 -15.65719 -15.27017 -15.17613 -14.92460 -14.64637
-14.43525 -14.20842 -14.04792 -13.68862 -13.43963 -13.10466 -13.03729 -12.73631
-12.68112 -12.41554 -12.27473 -12.18184 -12.12792 -12.00250 -11.85579 -11.84293
-11.72870 -11.21865 -10.97579 -10.88472 -10.82950 -10.78698 -10.70818 -10.41919
-10.10950 -9.67782 -9.44895 -9.31649 -9.18823 -8.64374 -7.86079 -7.51293
-7.29058 -4.83980 1.26845 2.26282 2.47908 2.56825 3.29456 3.54448
3.60341 3.66833 3.97863 4.17246 4.33229 4.34677 4.36768 4.44296
4.55702 4.58271 4.59892 4.81433 4.95994 5.09230 5.12037 5.22271
5.25335 5.31191 5.35018 5.36310 5.44899 5.45728 5.49049 5.53910
5.59509 5.66000 5.74534 5.75469 5.81397 5.86595 5.94030 5.99092
6.00719 6.04457 6.31403 6.36473 6.43797 6.85472 6.99914 7.10051
7.36462 7.42121 7.47905 7.64733 7.71824 8.00944 8.08629 8.28110
8.57808 9.31250 9.96215
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.023048 B = 0.001720 C = 0.001627
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1214.558214 B =16278.270304 C =17207.536859
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.071 4.071
3 C -0.142 4.142
4 C -0.145 4.145
5 C -0.108 4.108
6 C -0.121 4.121
7 C -0.133 4.133
8 C 0.117 3.883
9 N -0.703 5.703
10 C 0.512 3.488
11 O -0.514 6.514
12 C 0.508 3.492
13 O -0.496 6.496
14 N -0.623 5.623
15 C 0.382 3.618
16 C -0.310 4.310
17 C -0.034 4.034
18 C -0.270 4.270
19 C 0.272 3.728
20 C -0.472 4.472
21 H 0.085 0.915
22 C 0.044 3.956
23 N -0.802 5.802
24 Si 1.153 2.847
25 H -0.330 1.330
26 H -0.283 1.283
27 H -0.293 1.293
28 N -0.595 5.595
29 H 0.054 0.946
30 H 0.052 0.948
31 H 0.059 0.941
32 H 0.054 0.946
33 H 0.053 0.947
34 H 0.054 0.946
35 H 0.059 0.941
36 H 0.052 0.948
37 H 0.054 0.946
38 H 0.063 0.937
39 H 0.063 0.937
40 H 0.069 0.931
41 H 0.069 0.931
42 H 0.071 0.929
43 H 0.072 0.928
44 H 0.073 0.927
45 H 0.073 0.927
46 H 0.414 0.586
47 H 0.420 0.580
48 H 0.139 0.861
49 H 0.108 0.892
50 H 0.107 0.893
51 H 0.284 0.716
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.600 27.190 -12.230 29.857
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.071 4.071
3 C -0.199 4.199
4 C -0.202 4.202
5 C -0.146 4.146
6 C -0.158 4.158
7 C -0.171 4.171
8 C -0.006 4.006
9 N -0.357 5.357
10 C 0.292 3.708
11 O -0.389 6.389
12 C 0.289 3.711
13 O -0.370 6.370
14 N -0.269 5.269
15 C 0.152 3.848
16 C -0.334 4.334
17 C -0.058 4.058
18 C -0.293 4.293
19 C 0.148 3.852
20 C -0.504 4.504
21 H 0.103 0.897
22 C -0.178 4.178
23 N -0.424 5.424
24 Si 0.989 3.011
25 H -0.263 1.263
26 H -0.211 1.211
27 H -0.222 1.222
28 N -0.320 5.320
29 H 0.073 0.927
30 H 0.071 0.929
31 H 0.078 0.922
32 H 0.073 0.927
33 H 0.072 0.928
34 H 0.073 0.927
35 H 0.078 0.922
36 H 0.071 0.929
37 H 0.073 0.927
38 H 0.081 0.919
39 H 0.081 0.919
40 H 0.088 0.912
41 H 0.088 0.912
42 H 0.090 0.910
43 H 0.090 0.910
44 H 0.091 0.909
45 H 0.091 0.909
46 H 0.250 0.750
47 H 0.258 0.742
48 H 0.156 0.844
49 H 0.126 0.874
50 H 0.126 0.874
51 H 0.095 0.905
Dipole moment (debyes) X Y Z Total
from point charges -2.146 26.375 -14.449 30.150
hybrid contribution 0.632 0.511 2.595 2.719
sum -1.514 26.885 -11.855 29.422
Atomic orbital electron populations
1.21945 0.94606 1.02052 1.01600 1.20561 0.95737 0.95361 0.95485
1.21877 1.00942 0.95456 1.01667 1.21945 1.00962 1.00515 0.96790
1.21635 1.00651 0.94973 0.97298 1.21641 1.01382 0.95421 0.97398
1.21836 1.01724 0.93933 0.99610 1.21518 0.99816 0.92076 0.87216
1.45722 1.52843 1.11244 1.25855 1.20027 0.81346 0.82931 0.86461
1.90786 1.36328 1.65861 1.45932 1.19953 0.81625 0.82689 0.86872
1.90691 1.35105 1.65996 1.45192 1.42945 1.53931 1.10967 1.19103
1.18029 0.93917 0.89068 0.83811 1.21469 1.18258 1.00650 0.93069
1.20920 0.94631 0.94221 0.96069 1.21650 1.13992 0.93787 0.99839
1.18280 0.87382 0.93595 0.85911 1.20758 1.42042 0.89950 0.97659
0.89679 1.27776 0.88961 0.94964 1.06078 1.70645 1.30357 1.08960
1.32398 0.81842 0.78926 0.70750 0.69621 1.26317 1.21064 1.22151
1.65958 1.29739 1.07155 1.29150 0.92718 0.92893 0.92177 0.92712
0.92757 0.92722 0.92173 0.92884 0.92709 0.91857 0.91850 0.91200
0.91210 0.90998 0.90975 0.90851 0.90875 0.75009 0.74244 0.84406
0.87350 0.87442 0.90503
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -0.72 8.12 37.16 0.30 -0.42 16
2 C -0.07 -0.35 0.80 -154.51 -0.12 -0.48 16
3 C -0.14 -0.68 8.47 37.16 0.31 -0.36 16
4 C -0.14 -0.73 8.12 37.16 0.30 -0.43 16
5 C -0.11 -0.53 4.27 -26.73 -0.11 -0.65 16
6 C -0.12 -0.61 4.51 -26.73 -0.12 -0.74 16
7 C -0.13 -0.76 5.33 -26.73 -0.14 -0.90 16
8 C 0.12 0.96 5.67 -4.04 -0.02 0.94 16
9 N -0.70 -7.40 5.55 -60.76 -0.34 -7.74 16
10 C 0.51 7.40 7.89 -11.62 -0.09 7.30 16
11 O -0.51 -8.47 16.48 5.50 0.09 -8.38 16
12 C 0.51 8.71 7.73 -11.62 -0.09 8.62 16
13 O -0.50 -8.95 13.27 5.49 0.07 -8.87 16
14 N -0.62 -12.32 5.40 -11.83 -0.06 -12.39 16
15 C 0.38 8.83 7.50 -155.09 -1.16 7.67 16
16 C -0.31 -6.78 8.83 -38.88 -0.34 -7.13 16
17 C -0.03 -0.73 10.15 -39.39 -0.40 -1.13 16
18 C -0.27 -6.32 9.83 -38.65 -0.38 -6.70 16
19 C 0.27 7.11 6.39 -85.00 -0.54 6.57 16
20 C -0.47 -12.79 9.58 -37.73 -0.36 -13.16 16
21 H 0.09 2.28 8.05 -52.49 -0.42 1.86 16
22 C 0.04 1.19 5.52 -17.35 -0.10 1.10 16
23 N -0.80 -21.81 13.65 55.55 0.76 -21.05 16
24 Si 1.15 28.62 25.53 -169.99 -4.34 24.28 16
25 H -0.33 -8.09 7.11 56.52 0.40 -7.69 16
26 H -0.28 -6.84 6.70 56.52 0.38 -6.46 16
27 H -0.29 -7.37 7.10 56.52 0.40 -6.97 16
28 N -0.59 -15.20 4.59 -10.28 -0.05 -15.25 16
29 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16
30 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16
31 H 0.06 0.30 6.43 -51.93 -0.33 -0.03 16
32 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16
33 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16
34 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16
35 H 0.06 0.30 6.43 -51.93 -0.33 -0.03 16
36 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16
37 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16
38 H 0.06 0.32 8.14 -51.93 -0.42 -0.11 16
39 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16
40 H 0.07 0.36 6.43 -51.93 -0.33 0.03 16
41 H 0.07 0.36 6.43 -51.93 -0.33 0.03 16
42 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16
43 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16
44 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16
45 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16
46 H 0.41 3.78 7.94 -40.82 -0.32 3.46 16
47 H 0.42 7.97 8.31 -40.82 -0.34 7.63 16
48 H 0.14 2.86 5.33 -52.50 -0.28 2.58 16
49 H 0.11 1.92 8.06 -52.49 -0.42 1.50 16
50 H 0.11 2.32 8.06 -52.49 -0.42 1.90 16
51 H 0.28 7.34 8.72 -40.82 -0.36 6.99 16
LS Contribution 410.12 15.07 6.18 6.18
Total: -1.00 -30.31 410.12 -8.98 -39.29
By element:
Atomic # 1 Polarization: 12.02 SS G_CDS: -8.22 Total: 3.80 kcal
Atomic # 6 Polarization: 3.20 SS G_CDS: -3.07 Total: 0.13 kcal
Atomic # 7 Polarization: -56.73 SS G_CDS: 0.31 Total: -56.42 kcal
Atomic # 8 Polarization: -17.42 SS G_CDS: 0.16 Total: -17.26 kcal
Atomic # 14 Polarization: 28.62 SS G_CDS: -4.34 Total: 24.28 kcal
Total LS contribution 6.18 Total: 6.18 kcal
Total: -30.31 -8.98 -39.29 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000889903099.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -32.699 kcal
(2) G-P(sol) polarization free energy of solvation -30.315 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.014 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.979 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.293 kcal
(6) G-S(sol) free energy of system = (1) + (5) -71.993 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds