Wall clock time and date at job start Wed Apr 1 2020 04:21:36
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52998 * 109.47021 * 2 1
4 4 C 1.53005 * 109.46784 * 239.99992 * 2 1 3
5 5 C 1.53004 * 109.46980 * 120.00450 * 2 1 3
6 6 C 1.52998 * 109.47242 * 59.99972 * 5 2 1
7 7 C 1.53001 * 109.46898 * 179.97438 * 6 5 2
8 8 C 1.52998 * 109.47267 * 179.97438 * 7 6 5
9 9 N 1.46497 * 109.47452 * 180.02562 * 8 7 6
10 10 C 1.34775 * 119.99944 * 179.97438 * 9 8 7
11 11 O 1.21348 * 120.00209 * 0.02562 * 10 9 8
12 12 C 1.49371 * 119.99920 * 179.97438 * 10 9 8
13 13 O 1.21362 * 119.99781 * 0.02562 * 12 10 9
14 14 N 1.34775 * 119.99920 * 179.97438 * 12 10 9
15 15 C 1.39117 * 119.99568 * 185.60784 * 14 12 10
16 16 C 1.39708 * 119.57852 * 18.94636 * 15 14 12
17 17 C 1.38649 * 119.49082 * 180.02562 * 16 15 14
18 18 C 1.38354 * 118.67491 * 359.72950 * 17 16 15
19 19 C 1.40597 * 119.12796 * 0.53083 * 18 17 16
20 20 C 1.41346 * 119.78200 * 179.72961 * 19 18 17
21 21 H 1.08000 * 119.99622 * 7.00235 * 20 19 18
22 22 C 1.40024 * 119.99818 * 187.00431 * 20 19 18
23 23 N 1.30740 * 119.99814 * 181.90660 * 22 20 19
24 24 Si 1.86797 * 120.00331 * 1.90544 * 22 20 19
25 25 H 1.48499 * 109.47090 * 179.97438 * 24 22 20
26 26 H 1.48500 * 109.47238 * 300.00224 * 24 22 20
27 27 H 1.48506 * 109.46836 * 59.99940 * 24 22 20
28 28 N 1.31931 * 119.57822 * 198.96091 * 15 14 12
29 29 H 1.08996 * 109.47166 * 299.99774 * 1 2 3
30 30 H 1.09001 * 109.47316 * 60.00243 * 1 2 3
31 31 H 1.09001 * 109.47554 * 179.97438 * 1 2 3
32 32 H 1.09004 * 109.46993 * 179.97438 * 3 2 1
33 33 H 1.08996 * 109.47565 * 300.00043 * 3 2 1
34 34 H 1.09002 * 109.46888 * 60.00537 * 3 2 1
35 35 H 1.08992 * 109.47437 * 299.99630 * 4 2 1
36 36 H 1.08996 * 109.47028 * 60.00431 * 4 2 1
37 37 H 1.09004 * 109.46794 * 180.02562 * 4 2 1
38 38 H 1.08998 * 109.46741 * 299.99406 * 5 2 1
39 39 H 1.09000 * 109.46558 * 179.97438 * 5 2 1
40 40 H 1.08996 * 109.47201 * 60.00042 * 6 5 2
41 41 H 1.09004 * 109.47128 * 299.99925 * 6 5 2
42 42 H 1.08996 * 109.47120 * 60.00041 * 7 6 5
43 43 H 1.09004 * 109.47209 * 299.99923 * 7 6 5
44 44 H 1.09002 * 109.46888 * 59.99575 * 8 7 6
45 45 H 1.09004 * 109.46993 * 300.00117 * 8 7 6
46 46 H 0.97001 * 119.99523 * 359.97438 * 9 8 7
47 47 H 0.96991 * 120.00352 * 5.61391 * 14 12 10
48 48 H 1.08000 * 120.25769 * 359.97438 * 16 15 14
49 49 H 1.08002 * 120.66570 * 180.02562 * 17 16 15
50 50 H 1.07993 * 120.43559 * 180.28061 * 18 17 16
51 51 H 0.97007 * 120.00076 * 354.82632 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0399 -0.7213 -1.2493
5 6 2.0400 -0.7214 1.2492
6 6 1.5300 -2.1639 1.2491
7 6 2.0405 -2.8853 2.4980
8 6 1.5300 -4.3276 2.4984
9 7 2.0183 -5.0183 3.6945
10 6 1.6919 -6.3083 3.9082
11 8 0.9939 -6.8979 3.1096
12 6 2.1902 -7.0127 5.1275
13 8 2.8887 -6.4232 5.9259
14 7 1.8634 -8.3026 5.3414
15 6 2.2285 -8.9244 6.5311
16 6 2.5650 -8.1459 7.6413
17 6 2.9291 -8.7675 8.8259
18 6 2.9424 -10.1502 8.8732
19 6 2.5987 -10.8778 7.7202
20 6 2.6133 -12.2908 7.7514
21 1 2.7766 -12.8086 8.6850
22 6 2.4160 -13.0192 6.5719
23 7 2.3923 -14.3259 6.6068
24 14 2.1867 -12.1239 4.9485
25 1 1.9981 -13.1151 3.8590
26 1 0.9921 -11.2458 5.0319
27 1 3.3885 -11.2991 4.6641
28 7 2.2529 -10.2419 6.5965
29 1 -0.3633 0.5138 0.8900
30 1 -0.3634 0.5138 -0.8900
31 1 -0.3634 -1.0276 -0.0005
32 1 3.1300 1.4425 0.0005
33 1 1.6767 1.9564 -0.8899
34 1 1.6767 1.9563 0.8901
35 1 1.6767 -1.7489 -1.2493
36 1 1.6766 -0.2074 -2.1392
37 1 3.1300 -0.7217 -1.2491
38 1 1.6767 -0.2075 2.1392
39 1 3.1300 -0.7217 1.2489
40 1 1.8933 -2.6776 0.3592
41 1 0.4399 -2.1638 1.2491
42 1 1.6775 -2.3717 3.3882
43 1 3.1305 -2.8853 2.4976
44 1 1.8926 -4.8415 1.6081
45 1 0.4400 -4.3272 2.4990
46 1 2.5766 -4.5471 4.3326
47 1 1.3737 -8.7973 4.6660
48 1 2.5424 -7.0680 7.5770
49 1 3.1924 -8.1842 9.6958
50 1 3.2172 -10.6639 9.7825
51 1 2.5857 -14.7926 7.4350
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000889903099.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:21:36
Heat of formation + Delta-G solvation = -89.421260 kcal
Electronic energy + Delta-G solvation = -29281.406353 eV
Core-core repulsion = 25178.681976 eV
Total energy + Delta-G solvation = -4102.724377 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.00 seconds
Orbital eigenvalues (eV)
-42.26373 -40.74278 -39.56684 -39.09035 -37.05855 -36.28537 -35.41259 -33.83769
-33.05030 -31.56124 -29.58690 -28.10642 -28.09574 -27.54337 -26.50382 -24.50010
-23.70839 -22.87562 -22.38281 -21.35460 -20.45356 -19.79475 -19.41229 -18.47970
-17.80308 -17.38809 -17.00687 -16.88129 -16.59400 -16.22821 -15.77907 -15.70408
-15.45362 -15.38019 -15.12130 -14.88377 -14.77559 -14.52677 -14.27250 -14.11716
-13.75988 -13.48165 -13.34203 -13.16355 -12.89868 -12.81291 -12.61812 -12.50586
-12.32765 -12.31941 -12.30846 -12.27516 -11.87400 -11.64228 -11.62975 -11.27117
-11.22072 -11.18088 -11.17924 -10.71692 -10.45906 -10.36619 -9.80176 -9.32882
-9.29704 -6.85143 -0.09843 0.66716 0.79462 1.04535 1.55701 1.65569
1.95917 2.00487 2.39060 2.39781 2.63390 3.20203 3.51424 3.70770
3.93824 3.95393 4.00795 4.09443 4.10365 4.30129 4.35432 4.47984
4.56385 4.62741 4.66091 4.66537 4.68880 4.81417 4.82609 4.84991
4.94468 4.97598 4.98976 5.02557 5.13125 5.15671 5.18182 5.23176
5.28756 5.31276 5.33188 5.37670 5.41212 5.49006 5.61190 5.62079
5.63835 5.65590 5.84951 5.95936 6.18360 6.33229 6.51255 6.63896
6.76431 7.42780 7.93616
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.023048 B = 0.001720 C = 0.001627
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1214.558214 B =16278.270304 C =17207.536859
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.072 4.072
3 C -0.142 4.142
4 C -0.145 4.145
5 C -0.105 4.105
6 C -0.118 4.118
7 C -0.124 4.124
8 C 0.114 3.886
9 N -0.680 5.680
10 C 0.519 3.481
11 O -0.537 6.537
12 C 0.512 3.488
13 O -0.502 6.502
14 N -0.631 5.631
15 C 0.367 3.633
16 C -0.299 4.299
17 C -0.024 4.024
18 C -0.282 4.282
19 C 0.257 3.743
20 C -0.505 4.505
21 H 0.074 0.926
22 C 0.018 3.982
23 N -0.827 5.827
24 Si 1.182 2.818
25 H -0.329 1.329
26 H -0.278 1.278
27 H -0.301 1.301
28 N -0.613 5.613
29 H 0.054 0.946
30 H 0.051 0.949
31 H 0.059 0.941
32 H 0.054 0.946
33 H 0.053 0.947
34 H 0.055 0.945
35 H 0.059 0.941
36 H 0.051 0.949
37 H 0.053 0.947
38 H 0.064 0.936
39 H 0.063 0.937
40 H 0.069 0.931
41 H 0.070 0.930
42 H 0.079 0.921
43 H 0.078 0.922
44 H 0.072 0.928
45 H 0.073 0.927
46 H 0.423 0.577
47 H 0.422 0.578
48 H 0.156 0.844
49 H 0.152 0.848
50 H 0.120 0.880
51 H 0.283 0.717
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.444 30.519 -12.414 32.979
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.202 4.202
2 C -0.072 4.072
3 C -0.199 4.199
4 C -0.202 4.202
5 C -0.142 4.142
6 C -0.155 4.155
7 C -0.161 4.161
8 C -0.008 4.008
9 N -0.334 5.334
10 C 0.298 3.702
11 O -0.414 6.414
12 C 0.294 3.706
13 O -0.376 6.376
14 N -0.278 5.278
15 C 0.137 3.863
16 C -0.324 4.324
17 C -0.048 4.048
18 C -0.304 4.304
19 C 0.132 3.868
20 C -0.537 4.537
21 H 0.092 0.908
22 C -0.199 4.199
23 N -0.450 5.450
24 Si 1.016 2.984
25 H -0.262 1.262
26 H -0.206 1.206
27 H -0.230 1.230
28 N -0.339 5.339
29 H 0.073 0.927
30 H 0.070 0.930
31 H 0.078 0.922
32 H 0.073 0.927
33 H 0.072 0.928
34 H 0.074 0.926
35 H 0.078 0.922
36 H 0.070 0.930
37 H 0.072 0.928
38 H 0.083 0.917
39 H 0.082 0.918
40 H 0.088 0.912
41 H 0.089 0.911
42 H 0.098 0.902
43 H 0.097 0.903
44 H 0.090 0.910
45 H 0.092 0.908
46 H 0.261 0.739
47 H 0.260 0.740
48 H 0.173 0.827
49 H 0.170 0.830
50 H 0.138 0.862
51 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -1.983 29.773 -14.639 33.236
hybrid contribution 0.615 -0.206 2.684 2.761
sum -1.367 29.567 -11.955 31.922
Atomic orbital electron populations
1.21941 0.94634 1.02004 1.01593 1.20571 0.95706 0.95461 0.95484
1.21872 1.00957 0.95361 1.01724 1.21943 1.00919 1.00476 0.96860
1.21598 1.00637 0.94734 0.97274 1.21610 1.01425 0.95446 0.97063
1.21781 1.02044 0.92085 1.00227 1.21737 0.99933 0.93235 0.85915
1.45743 1.51508 1.09728 1.26400 1.19519 0.81521 0.83895 0.85264
1.90792 1.37720 1.66599 1.46312 1.20462 0.80788 0.81755 0.87577
1.90659 1.35227 1.65899 1.45816 1.43033 1.54432 1.11930 1.18369
1.18399 0.93812 0.88614 0.85468 1.21874 1.16221 1.01512 0.92763
1.21382 0.92599 0.93571 0.97239 1.21847 1.14152 0.94928 0.99505
1.18482 0.87529 0.93588 0.87215 1.20746 1.44754 0.90883 0.97356
0.90777 1.28355 0.88793 0.95226 1.07524 1.70654 1.32675 1.09188
1.32491 0.81437 0.78620 0.70093 0.68222 1.26219 1.20562 1.22965
1.65874 1.30160 1.08585 1.29314 0.92688 0.92970 0.92231 0.92682
0.92766 0.92631 0.92244 0.92954 0.92757 0.91721 0.91812 0.91250
0.91147 0.90209 0.90345 0.90976 0.90826 0.73927 0.74023 0.82675
0.83012 0.86173 0.90611
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.22 8.12 71.98 0.58 -0.64 16
2 C -0.07 -0.60 0.80 -52.18 -0.04 -0.64 16
3 C -0.14 -1.15 8.47 71.98 0.61 -0.54 16
4 C -0.14 -1.25 8.12 71.98 0.58 -0.67 16
5 C -0.10 -0.81 4.27 30.60 0.13 -0.68 16
6 C -0.12 -0.93 4.51 30.59 0.14 -0.79 16
7 C -0.12 -1.04 5.33 30.59 0.16 -0.88 16
8 C 0.11 1.58 5.67 86.38 0.49 2.07 16
9 N -0.68 -12.46 5.55 -464.51 -2.58 -15.04 16
10 C 0.52 13.88 7.89 87.24 0.69 14.57 16
11 O -0.54 -16.86 16.48 -3.24 -0.05 -16.91 16
12 C 0.51 16.47 7.73 87.24 0.67 17.14 16
13 O -0.50 -16.65 13.27 -3.29 -0.04 -16.70 16
14 N -0.63 -24.05 5.40 -309.70 -1.67 -25.72 16
15 C 0.37 16.41 7.50 133.30 1.00 17.41 16
16 C -0.30 -12.24 8.83 22.72 0.20 -12.04 16
17 C -0.02 -0.94 10.15 22.40 0.23 -0.71 16
18 C -0.28 -12.77 9.83 22.87 0.22 -12.54 16
19 C 0.26 13.41 6.39 40.20 0.26 13.67 16
20 C -0.50 -28.03 9.58 23.47 0.22 -27.81 16
21 H 0.07 4.13 8.05 -2.91 -0.02 4.11 16
22 C 0.02 1.03 5.52 85.29 0.47 1.50 16
23 N -0.83 -46.25 13.65 21.84 0.30 -45.95 16
24 Si 1.18 58.94 25.53 68.60 1.75 60.69 16
25 H -0.33 -16.06 7.11 99.48 0.71 -15.36 16
26 H -0.28 -13.42 6.70 99.48 0.67 -12.75 16
27 H -0.30 -15.16 7.10 99.48 0.71 -14.45 16
28 N -0.61 -31.07 4.59 -186.42 -0.85 -31.93 16
29 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16
30 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16
31 H 0.06 0.51 6.43 -2.39 -0.02 0.49 16
32 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16
33 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16
34 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16
35 H 0.06 0.52 6.43 -2.39 -0.02 0.50 16
36 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16
37 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16
38 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16
39 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16
40 H 0.07 0.58 6.43 -2.39 -0.02 0.56 16
41 H 0.07 0.57 6.43 -2.39 -0.02 0.55 16
42 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16
43 H 0.08 0.61 8.14 -2.39 -0.02 0.59 16
44 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16
45 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16
46 H 0.42 6.35 7.94 -92.71 -0.74 5.62 16
47 H 0.42 15.68 8.31 -92.72 -0.77 14.91 16
48 H 0.16 5.84 5.33 -3.17 -0.02 5.82 16
49 H 0.15 4.62 8.06 -2.91 -0.02 4.59 16
50 H 0.12 5.03 8.06 -2.91 -0.02 5.01 16
51 H 0.28 15.21 8.72 -92.70 -0.81 14.40 16
Total: -1.00 -64.73 410.12 2.84 -61.89
By element:
Atomic # 1 Polarization: 21.88 SS G_CDS: -0.64 Total: 21.24 kcal
Atomic # 6 Polarization: 1.80 SS G_CDS: 6.63 Total: 8.43 kcal
Atomic # 7 Polarization: -113.83 SS G_CDS: -4.81 Total: -118.64 kcal
Atomic # 8 Polarization: -33.51 SS G_CDS: -0.10 Total: -33.61 kcal
Atomic # 14 Polarization: 58.94 SS G_CDS: 1.75 Total: 60.69 kcal
Total: -64.73 2.84 -61.89 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000889903099.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -27.535 kcal
(2) G-P(sol) polarization free energy of solvation -64.726 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.261 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.840 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.886 kcal
(6) G-S(sol) free energy of system = (1) + (5) -89.421 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.00 seconds