Wall clock time and date at job start Wed Apr 1 2020 04:38:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 O 1.21280 * 120.00218 * 2 1 4 4 N 1.34770 * 119.99893 * 179.97438 * 2 1 3 5 5 C 1.46505 * 120.00390 * 180.02562 * 4 2 1 6 6 C 1.52991 * 109.47447 * 186.68115 * 5 4 2 7 7 H 1.08998 * 109.47091 * 309.41700 * 6 5 4 8 8 C 1.52993 * 109.47315 * 189.41053 * 6 5 4 9 9 C 1.50700 * 109.47299 * 173.20861 * 8 6 5 10 10 O 1.21266 * 120.00026 * 353.84149 * 9 8 6 11 11 N 1.34779 * 119.99978 * 173.84841 * 9 8 6 12 12 C 1.37213 * 120.00028 * 185.08939 * 11 9 8 13 13 H 1.08001 * 119.99885 * 9.08161 * 12 11 9 14 14 C 1.38891 * 120.00182 * 189.07973 * 12 11 9 15 15 N 1.31415 * 119.99682 * 8.50201 * 14 12 11 16 16 Si 1.86803 * 120.00017 * 188.49790 * 14 12 11 17 17 H 1.48499 * 109.46979 * 0.02562 * 16 14 12 18 18 H 1.48501 * 109.46690 * 120.00170 * 16 14 12 19 19 H 1.48494 * 109.47237 * 240.00096 * 16 14 12 20 20 C 1.39424 * 119.99937 * 5.08460 * 11 9 8 21 21 C 1.39071 * 119.69690 * 265.10385 * 20 11 9 22 22 C 1.38382 * 119.09448 * 180.02562 * 21 20 11 23 23 C 1.38818 * 118.49667 * 359.97438 * 22 21 20 24 24 C 1.38155 * 119.31103 * 0.27582 * 23 22 21 25 25 N 1.31878 * 120.84959 * 359.45305 * 24 23 22 26 26 C 1.53006 * 109.47080 * 69.41333 * 6 5 4 27 27 C 1.53005 * 109.47080 * 292.48914 * 26 6 5 28 28 C 1.52992 * 109.47014 * 178.09260 * 27 26 6 29 29 C 1.53001 * 109.46978 * 298.09013 * 27 26 6 30 30 H 1.09002 * 109.47072 * 240.01135 * 1 2 3 31 31 H 1.09008 * 109.46849 * 0.02562 * 1 2 3 32 32 H 1.08992 * 109.46924 * 120.00451 * 1 2 3 33 33 H 0.97003 * 119.99786 * 0.02562 * 4 2 1 34 34 H 1.08997 * 109.47065 * 66.67838 * 5 4 2 35 35 H 1.09001 * 109.46543 * 306.68305 * 5 4 2 36 36 H 1.09006 * 109.47062 * 53.20825 * 8 6 5 37 37 H 1.09002 * 109.47432 * 293.21156 * 8 6 5 38 38 H 0.97003 * 119.99960 * 179.97438 * 15 14 12 39 39 H 1.07996 * 120.44892 * 0.02562 * 21 20 11 40 40 H 1.08005 * 120.74985 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.34864 * 180.02562 * 23 22 21 42 42 H 1.08002 * 119.57408 * 179.69719 * 24 23 22 43 43 H 1.08995 * 109.47190 * 52.49117 * 26 6 5 44 44 H 1.09005 * 109.47039 * 172.49416 * 26 6 5 45 45 H 1.08997 * 109.46940 * 58.08833 * 27 26 6 46 46 H 1.08997 * 109.47616 * 59.99987 * 28 27 26 47 47 H 1.09004 * 109.47179 * 180.02562 * 28 27 26 48 48 H 1.09007 * 109.47078 * 299.99730 * 28 27 26 49 49 H 1.09002 * 109.47443 * 304.62357 * 29 27 26 50 50 H 1.08994 * 109.47335 * 64.62585 * 29 27 26 51 51 H 1.09002 * 109.47164 * 184.62294 * 29 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 0.0005 5 6 3.6459 -1.1673 0.0011 6 6 4.1559 -2.6000 -0.1662 7 1 3.6615 -3.2484 0.5571 8 6 5.6674 -2.6339 0.0679 9 6 6.1438 -4.0636 0.0683 10 8 5.3406 -4.9703 0.0104 11 7 7.4625 -4.3346 0.1333 12 6 7.9027 -5.6299 0.0286 13 1 7.2139 -6.4134 -0.2511 14 6 9.2340 -5.9336 0.2824 15 7 10.0330 -5.0180 0.7826 16 14 9.8888 -7.6437 -0.0871 17 1 8.7961 -8.4831 -0.6409 18 1 10.9902 -7.5483 -1.0786 19 1 10.4006 -8.2588 1.1638 20 6 8.3793 -3.2986 0.3069 21 6 8.9942 -2.7296 -0.8032 22 6 9.9026 -1.7025 -0.6165 23 6 10.1652 -1.2778 0.6787 24 6 9.5214 -1.8921 1.7355 25 7 8.6564 -2.8655 1.5268 26 6 3.8482 -3.0887 -1.5831 27 6 2.3348 -3.2333 -1.7553 28 6 2.0244 -3.6762 -3.1864 29 6 1.8073 -4.2799 -0.7718 30 1 -0.3633 -0.5137 0.8901 31 1 -0.3633 1.0278 -0.0005 32 1 -0.3633 -0.5139 -0.8899 33 1 1.6958 -2.0072 0.0005 34 1 4.0089 -0.7603 0.9448 35 1 4.0095 -0.5536 -0.8231 36 1 5.8966 -2.1742 1.0294 37 1 6.1707 -2.0835 -0.7271 38 1 10.9627 -5.2302 0.9602 39 1 8.7660 -3.0846 -1.7973 40 1 10.3954 -1.2412 -1.4596 41 1 10.8685 -0.4782 0.8588 42 1 9.7262 -1.5684 2.7453 43 1 4.2290 -2.3680 -2.3067 44 1 4.3264 -4.0546 -1.7461 45 1 1.8536 -2.2752 -1.5590 46 1 2.5056 -4.6343 -3.3828 47 1 0.9462 -3.7788 -3.3093 48 1 2.4002 -2.9305 -3.8871 49 1 2.3470 -5.2163 -0.9135 50 1 1.9547 -3.9265 0.2486 51 1 0.7444 -4.4427 -0.9499 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892477696.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:38:12 Heat of formation + Delta-G solvation = -30.491435 kcal Electronic energy + Delta-G solvation = -32051.021332 eV Core-core repulsion = 27950.852344 eV Total energy + Delta-G solvation = -4100.168988 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.14180 -39.64036 -38.37820 -37.23810 -34.78800 -34.19783 -32.85577 -31.86627 -31.44175 -30.01782 -29.14898 -27.31743 -27.11118 -25.74307 -24.69487 -22.63622 -22.52717 -21.11369 -20.84241 -19.58591 -18.81664 -18.09001 -16.91534 -16.53087 -16.02838 -15.74898 -15.62646 -15.40760 -14.93189 -14.76557 -14.43958 -14.16766 -13.91092 -13.66956 -13.62682 -13.37966 -13.17255 -12.82436 -12.67940 -12.61214 -12.41318 -12.28358 -12.10200 -12.04675 -11.79259 -11.60281 -11.42637 -11.21260 -11.20245 -11.11730 -10.96357 -10.51293 -10.42164 -10.34934 -10.26757 -10.12122 -9.89435 -9.58898 -8.96425 -8.88197 -8.68807 -8.60272 -8.05766 -7.87516 -6.31676 -3.97135 2.07447 2.24480 2.59628 3.09948 3.20024 3.22407 3.27194 3.67789 4.00423 4.49416 4.70324 4.73322 4.84394 4.93331 5.02462 5.05851 5.08715 5.15522 5.17401 5.36946 5.42247 5.52095 5.54238 5.61275 5.66455 5.71375 5.73483 5.81629 5.83282 5.85263 5.89471 5.94073 6.03947 6.08576 6.12241 6.19691 6.25210 6.31531 6.39982 6.43602 6.50350 6.55500 6.65879 6.76072 6.93937 6.96625 7.40884 7.47034 7.55674 7.95529 8.18124 8.33808 9.01066 9.06751 9.32147 9.76125 10.64308 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012023 B = 0.003450 C = 0.002883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2328.255718 B = 8113.956843 C = 9711.088028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.503 3.497 3 O -0.551 6.551 4 N -0.727 5.727 5 C 0.120 3.880 6 C -0.081 4.081 7 H 0.090 0.910 8 C -0.126 4.126 9 C 0.471 3.529 10 O -0.568 6.568 11 N -0.412 5.412 12 C -0.309 4.309 13 H 0.112 0.888 14 C 0.029 3.971 15 N -0.869 5.869 16 Si 0.932 3.068 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.281 1.281 20 C 0.445 3.555 21 C -0.169 4.169 22 C -0.072 4.072 23 C -0.206 4.206 24 C 0.118 3.882 25 N -0.469 5.469 26 C -0.111 4.111 27 C -0.114 4.114 28 C -0.144 4.144 29 C -0.152 4.152 30 H 0.087 0.913 31 H 0.090 0.910 32 H 0.086 0.914 33 H 0.406 0.594 34 H 0.065 0.935 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.078 0.922 38 H 0.270 0.730 39 H 0.118 0.882 40 H 0.118 0.882 41 H 0.117 0.883 42 H 0.138 0.862 43 H 0.054 0.946 44 H 0.087 0.913 45 H 0.078 0.922 46 H 0.056 0.944 47 H 0.049 0.951 48 H 0.050 0.950 49 H 0.068 0.932 50 H 0.053 0.947 51 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.956 7.670 -3.840 13.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.290 3.710 3 O -0.429 6.429 4 N -0.384 5.384 5 C -0.003 4.003 6 C -0.100 4.100 7 H 0.108 0.892 8 C -0.167 4.167 9 C 0.260 3.740 10 O -0.450 6.450 11 N -0.131 5.131 12 C -0.436 4.436 13 H 0.130 0.870 14 C -0.175 4.175 15 N -0.507 5.507 16 Si 0.759 3.241 17 H -0.192 1.192 18 H -0.207 1.207 19 H -0.207 1.207 20 C 0.218 3.782 21 C -0.191 4.191 22 C -0.099 4.099 23 C -0.227 4.227 24 C -0.041 4.041 25 N -0.181 5.181 26 C -0.148 4.148 27 C -0.133 4.133 28 C -0.202 4.202 29 C -0.209 4.209 30 H 0.105 0.895 31 H 0.109 0.891 32 H 0.105 0.895 33 H 0.246 0.754 34 H 0.083 0.917 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.097 0.903 38 H 0.082 0.918 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.135 0.865 42 H 0.155 0.845 43 H 0.073 0.927 44 H 0.105 0.895 45 H 0.096 0.904 46 H 0.075 0.925 47 H 0.068 0.932 48 H 0.069 0.931 49 H 0.087 0.913 50 H 0.072 0.928 51 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -11.144 7.512 -3.102 13.793 hybrid contribution 1.204 -0.884 -0.685 1.643 sum -9.940 6.628 -3.787 12.533 Atomic orbital electron populations 1.21940 0.92046 1.05384 1.04208 1.20819 0.90578 0.83685 0.75930 1.90716 1.70916 1.31521 1.49714 1.46670 1.08087 1.08987 1.74641 1.21522 0.79083 0.97523 1.02189 1.21155 0.95169 0.94438 0.99270 0.89200 1.21498 0.95478 0.96524 1.03242 1.19795 0.81697 0.90222 0.82302 1.90506 1.52604 1.47588 1.54319 1.41226 1.03275 1.05552 1.63061 1.19841 0.94415 0.83617 1.45680 0.87015 1.25279 0.96375 0.99783 0.96042 1.69547 1.06400 1.33320 1.41472 0.85752 0.78812 0.81486 0.78058 1.19157 1.20713 1.20730 1.17618 0.87304 0.85629 0.87640 1.21796 0.99390 0.98386 0.99546 1.21134 0.96190 0.95803 0.96756 1.21743 1.03502 1.03431 0.94023 1.22183 0.92464 0.91295 0.98152 1.67240 1.15947 1.10266 1.24604 1.21771 0.95052 1.02985 0.95022 1.21540 0.96938 0.99334 0.95492 1.21805 1.00644 1.01503 0.96218 1.21944 0.99989 1.00353 0.98641 0.89472 0.89065 0.89487 0.75438 0.91695 0.91116 0.89773 0.90329 0.91819 0.86382 0.86442 0.86525 0.84507 0.92708 0.89484 0.90411 0.92530 0.93213 0.93084 0.91327 0.92782 0.93360 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.33 10.32 36.01 0.37 -0.95 16 2 C 0.50 6.13 7.94 -10.99 -0.09 6.04 16 3 O -0.55 -9.16 17.06 5.56 0.09 -9.06 16 4 N -0.73 -8.35 3.75 -60.30 -0.23 -8.57 16 5 C 0.12 1.61 5.04 -4.04 -0.02 1.59 16 6 C -0.08 -1.20 1.55 -90.62 -0.14 -1.34 16 7 H 0.09 1.42 5.88 -51.93 -0.31 1.11 16 8 C -0.13 -2.24 4.00 -27.89 -0.11 -2.36 16 9 C 0.47 10.69 7.12 -10.98 -0.08 10.61 16 10 O -0.57 -13.91 14.00 5.57 0.08 -13.83 16 11 N -0.41 -10.26 2.74 -60.71 -0.17 -10.42 16 12 C -0.31 -8.32 9.49 -14.90 -0.14 -8.47 16 13 H 0.11 3.10 7.24 -52.49 -0.38 2.72 16 14 C 0.03 0.75 5.37 -17.49 -0.09 0.65 16 15 N -0.87 -22.96 10.07 55.49 0.56 -22.40 16 16 Si 0.93 20.62 29.56 -169.99 -5.02 15.60 16 17 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 18 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 20 C 0.44 10.24 2.36 -154.64 -0.37 9.87 16 21 C -0.17 -3.46 9.73 -39.22 -0.38 -3.84 16 22 C -0.07 -1.26 10.17 -39.31 -0.40 -1.66 16 23 C -0.21 -3.47 10.11 -39.40 -0.40 -3.87 16 24 C 0.12 2.25 11.18 -17.56 -0.20 2.05 16 25 N -0.47 -10.73 9.56 -12.34 -0.12 -10.85 16 26 C -0.11 -1.58 3.99 -26.73 -0.11 -1.69 16 27 C -0.11 -1.31 2.37 -90.62 -0.21 -1.53 16 28 C -0.14 -1.55 9.19 37.15 0.34 -1.21 16 29 C -0.15 -1.74 8.16 37.16 0.30 -1.44 16 30 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.68 8.12 -51.92 -0.42 0.26 16 32 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.41 3.98 4.57 -40.82 -0.19 3.79 16 34 H 0.06 0.91 8.08 -51.93 -0.42 0.49 16 35 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 36 H 0.08 1.51 8.09 -51.93 -0.42 1.09 16 37 H 0.08 1.32 7.99 -51.93 -0.42 0.91 16 38 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 39 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.12 1.66 8.06 -52.48 -0.42 1.24 16 41 H 0.12 1.56 8.06 -52.49 -0.42 1.14 16 42 H 0.14 2.19 8.06 -52.49 -0.42 1.77 16 43 H 0.05 0.75 8.08 -51.93 -0.42 0.33 16 44 H 0.09 1.52 6.24 -51.93 -0.32 1.19 16 45 H 0.08 0.81 4.84 -51.93 -0.25 0.56 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 48 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 49 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 50 H 0.05 0.62 5.59 -51.93 -0.29 0.32 16 51 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 LS Contribution 406.45 15.07 6.13 6.13 Total: -1.00 -32.49 406.45 -8.43 -40.92 By element: Atomic # 1 Polarization: 18.06 SS G_CDS: -8.04 Total: 10.03 kcal Atomic # 6 Polarization: 4.19 SS G_CDS: -1.72 Total: 2.47 kcal Atomic # 7 Polarization: -52.30 SS G_CDS: 0.05 Total: -52.25 kcal Atomic # 8 Polarization: -23.06 SS G_CDS: 0.17 Total: -22.89 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.02 Total: 15.60 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.49 -8.43 -40.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892477696.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.430 kcal (2) G-P(sol) polarization free energy of solvation -32.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds