Wall clock time and date at job start Wed Apr 1 2020 05:31:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47095 * 2 1 4 4 C 1.52996 * 109.47505 * 120.00300 * 2 1 3 5 5 N 1.46498 * 109.47766 * 175.00140 * 4 2 1 6 6 C 1.35421 * 119.47516 * 89.99490 * 5 4 2 7 7 C 1.35761 * 121.23478 * 179.70654 * 6 5 4 8 8 C 1.39468 * 120.12893 * 0.27438 * 7 6 5 9 9 C 1.39346 * 118.95907 * 0.02562 * 8 7 6 10 10 C 1.47079 * 120.58770 * 179.97438 * 9 8 7 11 11 O 1.21655 * 119.99960 * 354.15789 * 10 9 8 12 12 N 1.34769 * 120.00023 * 174.15054 * 10 9 8 13 13 C 1.46506 * 120.00136 * 184.92143 * 12 10 9 14 14 C 1.53036 * 109.46139 * 275.07627 * 13 12 10 15 15 C 1.53195 * 109.30920 * 178.61364 * 14 13 12 16 16 N 1.46925 * 108.77656 * 54.63726 * 15 14 13 17 17 C 1.36935 * 120.63281 * 126.41266 * 16 15 14 18 18 H 1.07995 * 120.00322 * 328.65291 * 17 16 15 19 19 C 1.38814 * 120.00060 * 148.65276 * 17 16 15 20 20 N 1.31621 * 119.99748 * 350.03487 * 19 17 16 21 21 Si 1.86800 * 120.00242 * 170.03022 * 19 17 16 22 22 H 1.48508 * 109.46604 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47088 * 119.99829 * 21 19 17 24 24 H 1.48496 * 109.47342 * 240.00131 * 21 19 17 25 25 C 1.46930 * 118.73705 * 306.38909 * 16 15 14 26 26 C 1.53039 * 109.45654 * 155.00567 * 13 12 10 27 27 C 1.34659 * 119.46716 * 270.26031 * 5 4 2 28 28 O 1.21888 * 120.10536 * 0.02562 * 27 5 4 29 29 H 1.09005 * 109.47245 * 300.00064 * 1 2 3 30 30 H 1.08999 * 109.47251 * 59.99843 * 1 2 3 31 31 H 1.09006 * 109.47539 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47245 * 239.99936 * 2 1 3 33 33 H 1.08997 * 109.47339 * 299.99424 * 3 2 1 34 34 H 1.08996 * 109.47399 * 60.00385 * 3 2 1 35 35 H 1.09007 * 109.46768 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47003 * 54.99529 * 4 2 1 37 37 H 1.09000 * 109.46903 * 295.00078 * 4 2 1 38 38 H 1.08003 * 119.38699 * 359.97438 * 6 5 4 39 39 H 1.07999 * 119.93366 * 180.26058 * 7 6 5 40 40 H 1.07993 * 120.52367 * 180.02562 * 8 7 6 41 41 H 0.97001 * 120.00366 * 4.93113 * 12 10 9 42 42 H 1.08997 * 109.45365 * 35.03778 * 13 12 10 43 43 H 1.09003 * 109.49899 * 298.55950 * 14 13 12 44 44 H 1.08993 * 109.50058 * 58.66231 * 14 13 12 45 45 H 1.08996 * 109.58749 * 294.84324 * 15 14 13 46 46 H 1.09005 * 109.70349 * 174.48754 * 15 14 13 47 47 H 0.97003 * 119.99807 * 180.02562 * 20 19 17 48 48 H 1.09003 * 109.58264 * 293.82149 * 25 16 15 49 49 H 1.08994 * 109.70265 * 173.46839 * 25 16 15 50 50 H 1.09001 * 109.50189 * 301.33858 * 26 13 12 51 51 H 1.08992 * 109.50204 * 61.40679 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5000 -0.8264 1.1905 6 6 4.2610 0.1600 1.7214 7 6 5.6168 0.0964 1.6921 8 6 6.2538 -0.9955 1.1030 9 6 5.4773 -2.0115 0.5492 10 6 6.1116 -3.1790 -0.0815 11 8 7.3199 -3.2149 -0.2183 12 7 5.3543 -4.2091 -0.5076 13 6 5.9920 -5.4173 -1.0369 14 6 6.3033 -5.2206 -2.5222 15 6 7.0010 -6.4724 -3.0637 16 7 6.1634 -7.6439 -2.7727 17 6 5.7934 -8.5028 -3.7729 18 1 5.6492 -8.1323 -4.7771 19 6 5.6035 -9.8498 -3.4963 20 7 5.9650 -10.3392 -2.3291 21 14 4.8347 -10.9678 -4.7802 22 1 4.5200 -10.1791 -5.9986 23 1 5.7876 -12.0529 -5.1260 24 1 3.5859 -11.5600 -4.2371 25 6 5.7308 -7.8766 -1.3879 26 6 5.0474 -6.6091 -0.8653 27 6 4.0639 -1.8999 0.6048 28 8 3.3624 -2.7750 0.1278 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.6053 -1.7198 1.2951 37 1 1.7517 -0.1584 2.1369 38 1 3.7803 1.0113 2.1806 39 1 6.2031 0.8931 2.1255 40 1 7.3319 -1.0529 1.0765 41 1 4.3871 -4.1507 -0.4641 42 1 6.9179 -5.6067 -0.4939 43 1 5.3753 -5.0559 -3.0698 44 1 6.9573 -4.3575 -2.6457 45 1 7.9712 -6.5877 -2.5806 46 1 7.1380 -6.3798 -4.1411 47 1 5.8327 -11.2805 -2.1359 48 1 6.5975 -8.1065 -0.7682 49 1 5.0285 -8.7096 -1.3574 50 1 4.8075 -6.7343 0.1906 51 1 4.1310 -6.4311 -1.4279 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932216288.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:10 Heat of formation + Delta-G solvation = -23.446634 kcal Electronic energy + Delta-G solvation = -31207.251768 eV Core-core repulsion = 27107.388266 eV Total energy + Delta-G solvation = -4099.863502 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -41.94541 -39.34527 -37.50522 -37.26469 -36.58454 -34.11734 -33.68507 -31.92615 -30.54926 -29.87957 -29.14338 -27.81589 -27.43019 -25.54338 -24.30439 -23.15993 -22.11546 -21.79830 -20.88645 -20.36123 -19.23760 -18.01850 -17.75356 -17.24288 -16.57456 -16.34462 -16.04704 -15.42059 -15.25751 -14.82508 -14.70667 -14.56821 -14.10457 -13.93402 -13.57802 -13.52176 -13.36780 -12.94526 -12.93829 -12.77525 -12.71995 -12.52001 -12.41459 -12.28407 -12.17035 -11.82960 -11.50988 -11.32475 -11.27667 -10.95452 -10.74245 -10.66295 -10.32948 -10.31731 -10.21221 -10.09520 -9.90704 -9.75910 -9.57287 -9.32808 -8.50710 -8.39289 -8.23259 -6.51603 -5.69278 -3.16529 0.16018 1.48548 2.11448 2.77824 3.42570 3.49673 3.52403 3.65062 3.73685 4.03707 4.05563 4.21758 4.39781 4.45665 4.56682 4.64135 4.71335 4.86349 4.99171 5.02243 5.04084 5.16857 5.25842 5.33985 5.47464 5.48355 5.57734 5.58633 5.61699 5.69545 5.70761 5.77965 5.78698 5.89692 6.05878 6.09833 6.27246 6.46725 6.55535 6.60909 6.72857 6.76882 6.79883 6.95521 7.14939 7.19243 7.48752 7.58312 7.78511 7.87837 8.16356 8.57692 8.73156 9.32128 9.93818 10.52934 11.39083 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.002430 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.020041 B =11521.699520 C =12669.475739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.154 4.154 4 C 0.091 3.909 5 N -0.488 5.488 6 C 0.155 3.845 7 C -0.240 4.240 8 C 0.053 3.947 9 C -0.267 4.267 10 C 0.569 3.431 11 O -0.555 6.555 12 N -0.709 5.709 13 C 0.150 3.850 14 C -0.138 4.138 15 C 0.148 3.852 16 N -0.594 5.594 17 C -0.247 4.247 18 H 0.064 0.936 19 C 0.001 3.999 20 N -0.906 5.906 21 Si 0.904 3.096 22 H -0.278 1.278 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.176 3.824 26 C -0.145 4.145 27 C 0.528 3.472 28 O -0.536 6.536 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.082 0.918 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.106 0.894 37 H 0.093 0.907 38 H 0.165 0.835 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.411 0.589 42 H 0.077 0.923 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.020 0.980 46 H 0.055 0.945 47 H 0.253 0.747 48 H 0.020 0.980 49 H 0.093 0.907 50 H 0.052 0.948 51 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.997 28.572 12.456 32.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.133 4.133 3 C -0.211 4.211 4 C -0.030 4.030 5 N -0.196 5.196 6 C 0.025 3.975 7 C -0.263 4.263 8 C 0.030 3.970 9 C -0.274 4.274 10 C 0.355 3.645 11 O -0.436 6.436 12 N -0.367 5.367 13 C 0.047 3.953 14 C -0.178 4.178 15 C 0.022 3.978 16 N -0.317 5.317 17 C -0.377 4.377 18 H 0.082 0.918 19 C -0.197 4.197 20 N -0.551 5.551 21 Si 0.735 3.265 22 H -0.203 1.203 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.049 3.951 26 C -0.185 4.185 27 C 0.331 3.669 28 O -0.417 6.417 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.124 0.876 37 H 0.112 0.888 38 H 0.182 0.818 39 H 0.171 0.829 40 H 0.167 0.833 41 H 0.256 0.744 42 H 0.096 0.904 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.038 0.962 46 H 0.073 0.927 47 H 0.063 0.937 48 H 0.038 0.962 49 H 0.111 0.889 50 H 0.070 0.930 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.742 27.739 12.093 31.497 hybrid contribution -0.777 -0.375 -0.482 0.989 sum -9.519 27.363 11.611 31.212 Atomic orbital electron populations 1.21751 0.93482 1.02637 1.02298 1.21474 0.96981 0.96526 0.98278 1.21971 1.01120 0.95542 1.02507 1.22245 0.76966 1.04301 0.99519 1.45467 1.09113 1.18398 1.46638 1.22161 0.92590 0.91041 0.91670 1.20686 0.92935 1.02353 1.10301 1.22035 1.01651 0.88666 0.84679 1.21215 0.92097 1.01065 1.12996 1.17436 0.86474 0.82189 0.78374 1.90772 1.13840 1.80584 1.58389 1.46840 1.12226 1.15838 1.61796 1.21010 0.96705 0.83183 0.94444 1.22359 1.00793 0.99368 0.95320 1.20884 0.92493 0.86453 0.98018 1.44062 1.56522 1.26200 1.04868 1.19242 1.40017 0.87838 0.90644 0.91789 1.25175 1.00619 0.96726 0.97176 1.69980 1.50097 1.12927 1.22136 0.86182 0.78568 0.80711 0.81083 1.20286 1.21703 1.21655 1.20764 0.97204 0.92873 0.84236 1.22525 0.98976 0.97103 0.99935 1.17077 0.88884 0.81418 0.79560 1.90664 1.63623 1.38795 1.48667 0.92380 0.91890 0.91922 0.89952 0.91888 0.92297 0.92610 0.87577 0.88833 0.81772 0.82933 0.83257 0.74416 0.90439 0.92508 0.92719 0.96211 0.92690 0.93714 0.96222 0.88877 0.92959 0.92280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.69 9.19 37.15 0.34 -0.35 16 2 C -0.11 -0.67 3.12 -90.63 -0.28 -0.95 16 3 C -0.15 -0.66 8.63 37.16 0.32 -0.34 16 4 C 0.09 0.54 4.83 -4.04 -0.02 0.52 16 5 N -0.49 -3.85 2.46 -119.34 -0.29 -4.15 16 6 C 0.15 0.76 8.20 -16.86 -0.14 0.62 16 7 C -0.24 -1.37 9.99 -40.01 -0.40 -1.77 16 8 C 0.05 0.52 9.70 -38.71 -0.38 0.15 16 9 C -0.27 -3.64 5.92 -104.50 -0.62 -4.26 16 10 C 0.57 10.22 7.69 -12.68 -0.10 10.13 16 11 O -0.56 -11.36 16.07 5.23 0.08 -11.27 16 12 N -0.71 -13.23 4.99 -54.95 -0.27 -13.51 16 13 C 0.15 3.10 2.38 -67.89 -0.16 2.94 16 14 C -0.14 -2.91 5.65 -26.61 -0.15 -3.06 16 15 C 0.15 3.48 6.52 -3.71 -0.02 3.46 16 16 N -0.59 -15.89 2.99 -172.32 -0.51 -16.41 16 17 C -0.25 -7.10 9.59 -15.06 -0.14 -7.25 16 18 H 0.06 1.81 7.85 -52.49 -0.41 1.40 16 19 C 0.00 0.03 5.07 -17.43 -0.09 -0.06 16 20 N -0.91 -27.13 11.00 55.49 0.61 -26.51 16 21 Si 0.90 22.39 29.57 -169.99 -5.03 17.36 16 22 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 23 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 24 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 25 C 0.18 4.47 5.25 -3.71 -0.02 4.45 16 26 C -0.15 -3.10 5.55 -26.61 -0.15 -3.25 16 27 C 0.53 6.65 7.44 -14.92 -0.11 6.54 16 28 O -0.54 -8.25 13.27 5.02 0.07 -8.18 16 29 H 0.06 0.20 8.14 -51.93 -0.42 -0.22 16 30 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.06 0.15 8.14 -51.93 -0.42 -0.27 16 35 H 0.05 0.26 6.34 -51.93 -0.33 -0.07 16 36 H 0.11 0.81 7.39 -51.93 -0.38 0.42 16 37 H 0.09 0.26 8.00 -51.93 -0.42 -0.16 16 38 H 0.17 0.12 7.88 -52.48 -0.41 -0.29 16 39 H 0.15 0.39 8.06 -52.49 -0.42 -0.03 16 40 H 0.15 1.43 7.71 -52.49 -0.40 1.02 16 41 H 0.41 7.52 5.21 -40.82 -0.21 7.31 16 42 H 0.08 1.72 7.65 -51.93 -0.40 1.32 16 43 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 44 H 0.05 1.12 8.09 -51.93 -0.42 0.70 16 45 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 46 H 0.05 1.25 7.93 -51.93 -0.41 0.83 16 47 H 0.25 7.27 8.31 -40.82 -0.34 6.93 16 48 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.09 2.60 6.08 -51.93 -0.32 2.28 16 50 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 51 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 LS Contribution 402.41 15.07 6.06 6.06 Total: -1.00 -35.72 402.41 -9.72 -45.45 By element: Atomic # 1 Polarization: 11.97 SS G_CDS: -8.32 Total: 3.64 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: -2.12 Total: 7.52 kcal Atomic # 7 Polarization: -60.10 SS G_CDS: -0.47 Total: -60.57 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: 0.15 Total: -19.46 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.03 Total: 17.36 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.72 -9.72 -45.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932216288.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.001 kcal (2) G-P(sol) polarization free energy of solvation -35.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds