Wall clock time and date at job start Wed Apr 1 2020 05:31:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.52998 * 109.47095 * 2 1 4 4 C 1.52996 * 109.47505 * 120.00300 * 2 1 3 5 5 N 1.46498 * 109.47766 * 175.00140 * 4 2 1 6 6 C 1.35421 * 119.47516 * 89.99490 * 5 4 2 7 7 C 1.35761 * 121.23478 * 179.70654 * 6 5 4 8 8 C 1.39468 * 120.12893 * 0.27438 * 7 6 5 9 9 C 1.39346 * 118.95907 * 0.02562 * 8 7 6 10 10 C 1.47079 * 120.58770 * 179.97438 * 9 8 7 11 11 O 1.21655 * 119.99960 * 354.15789 * 10 9 8 12 12 N 1.34769 * 120.00023 * 174.15054 * 10 9 8 13 13 C 1.46506 * 120.00136 * 184.92143 * 12 10 9 14 14 C 1.53036 * 109.46139 * 275.07627 * 13 12 10 15 15 C 1.53195 * 109.30920 * 178.61364 * 14 13 12 16 16 N 1.46925 * 108.77656 * 54.63726 * 15 14 13 17 17 C 1.36935 * 120.63281 * 126.41266 * 16 15 14 18 18 H 1.07995 * 120.00322 * 328.65291 * 17 16 15 19 19 C 1.38814 * 120.00060 * 148.65276 * 17 16 15 20 20 N 1.31621 * 119.99748 * 350.03487 * 19 17 16 21 21 Si 1.86800 * 120.00242 * 170.03022 * 19 17 16 22 22 H 1.48508 * 109.46604 * 0.02562 * 21 19 17 23 23 H 1.48497 * 109.47088 * 119.99829 * 21 19 17 24 24 H 1.48496 * 109.47342 * 240.00131 * 21 19 17 25 25 C 1.46930 * 118.73705 * 306.38909 * 16 15 14 26 26 C 1.53039 * 109.45654 * 155.00567 * 13 12 10 27 27 C 1.34659 * 119.46716 * 270.26031 * 5 4 2 28 28 O 1.21888 * 120.10536 * 0.02562 * 27 5 4 29 29 H 1.09005 * 109.47245 * 300.00064 * 1 2 3 30 30 H 1.08999 * 109.47251 * 59.99843 * 1 2 3 31 31 H 1.09006 * 109.47539 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47245 * 239.99936 * 2 1 3 33 33 H 1.08997 * 109.47339 * 299.99424 * 3 2 1 34 34 H 1.08996 * 109.47399 * 60.00385 * 3 2 1 35 35 H 1.09007 * 109.46768 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47003 * 54.99529 * 4 2 1 37 37 H 1.09000 * 109.46903 * 295.00078 * 4 2 1 38 38 H 1.08003 * 119.38699 * 359.97438 * 6 5 4 39 39 H 1.07999 * 119.93366 * 180.26058 * 7 6 5 40 40 H 1.07993 * 120.52367 * 180.02562 * 8 7 6 41 41 H 0.97001 * 120.00366 * 4.93113 * 12 10 9 42 42 H 1.08997 * 109.45365 * 35.03778 * 13 12 10 43 43 H 1.09003 * 109.49899 * 298.55950 * 14 13 12 44 44 H 1.08993 * 109.50058 * 58.66231 * 14 13 12 45 45 H 1.08996 * 109.58749 * 294.84324 * 15 14 13 46 46 H 1.09005 * 109.70349 * 174.48754 * 15 14 13 47 47 H 0.97003 * 119.99807 * 180.02562 * 20 19 17 48 48 H 1.09003 * 109.58264 * 293.82149 * 25 16 15 49 49 H 1.08994 * 109.70265 * 173.46839 * 25 16 15 50 50 H 1.09001 * 109.50189 * 301.33858 * 26 13 12 51 51 H 1.08992 * 109.50204 * 61.40679 * 26 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2491 5 7 3.5000 -0.8264 1.1905 6 6 4.2610 0.1600 1.7214 7 6 5.6168 0.0964 1.6921 8 6 6.2538 -0.9955 1.1030 9 6 5.4773 -2.0115 0.5492 10 6 6.1116 -3.1790 -0.0815 11 8 7.3199 -3.2149 -0.2183 12 7 5.3543 -4.2091 -0.5076 13 6 5.9920 -5.4173 -1.0369 14 6 6.3033 -5.2206 -2.5222 15 6 7.0010 -6.4724 -3.0637 16 7 6.1634 -7.6439 -2.7727 17 6 5.7934 -8.5028 -3.7729 18 1 5.6492 -8.1323 -4.7771 19 6 5.6035 -9.8498 -3.4963 20 7 5.9650 -10.3392 -2.3291 21 14 4.8347 -10.9678 -4.7802 22 1 4.5200 -10.1791 -5.9986 23 1 5.7876 -12.0529 -5.1260 24 1 3.5859 -11.5600 -4.2371 25 6 5.7308 -7.8766 -1.3879 26 6 5.0474 -6.6091 -0.8653 27 6 4.0639 -1.8999 0.6048 28 8 3.3624 -2.7750 0.1278 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 3.1300 1.4424 -0.0005 36 1 1.6053 -1.7198 1.2951 37 1 1.7517 -0.1584 2.1369 38 1 3.7803 1.0113 2.1806 39 1 6.2031 0.8931 2.1255 40 1 7.3319 -1.0529 1.0765 41 1 4.3871 -4.1507 -0.4641 42 1 6.9179 -5.6067 -0.4939 43 1 5.3753 -5.0559 -3.0698 44 1 6.9573 -4.3575 -2.6457 45 1 7.9712 -6.5877 -2.5806 46 1 7.1380 -6.3798 -4.1411 47 1 5.8327 -11.2805 -2.1359 48 1 6.5975 -8.1065 -0.7682 49 1 5.0285 -8.7096 -1.3574 50 1 4.8075 -6.7343 0.1906 51 1 4.1310 -6.4311 -1.4279 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932216288.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:09 Heat of formation + Delta-G solvation = -46.706187 kcal Electronic energy + Delta-G solvation = -31208.260378 eV Core-core repulsion = 27107.388266 eV Total energy + Delta-G solvation = -4100.872112 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.70700 -40.73292 -38.96676 -38.36689 -37.24323 -35.90121 -34.38215 -33.82081 -31.91032 -31.47726 -30.77474 -28.21132 -27.91923 -27.18594 -25.63648 -24.01916 -23.84301 -23.49898 -21.81084 -21.27272 -21.04934 -19.21609 -18.70010 -18.45464 -17.91203 -17.09615 -17.03148 -16.91189 -16.59912 -15.93321 -15.72241 -15.64700 -15.40281 -15.38476 -15.14428 -14.85172 -14.79165 -14.25219 -14.14654 -13.89851 -13.54532 -13.45754 -13.25432 -13.17313 -13.06546 -12.96709 -12.76481 -12.68477 -12.56510 -12.29965 -12.24440 -12.02395 -11.93654 -11.92246 -11.70268 -11.61316 -11.47530 -11.16811 -10.99862 -10.89213 -10.60281 -9.96733 -9.09074 -8.68886 -7.89003 -5.41188 -0.56177 0.78292 1.45954 1.46270 1.46818 1.58349 1.73706 2.37331 2.49218 2.71466 3.27459 3.46399 3.61124 3.68945 3.77783 3.80379 3.87499 3.93640 3.96585 4.02309 4.13623 4.21475 4.28364 4.36484 4.39993 4.59468 4.60204 4.68085 4.76296 4.78229 4.80875 4.83959 4.93824 4.95545 4.99386 4.99869 5.00898 5.09244 5.21610 5.22961 5.25205 5.36401 5.37572 5.42735 5.50487 5.60791 5.62885 5.67264 5.89937 6.38773 6.60834 6.88703 7.12236 7.35246 7.79278 8.35231 9.18079 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015621 B = 0.002430 C = 0.002210 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.020041 B =11521.699520 C =12669.475739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.111 4.111 3 C -0.151 4.151 4 C 0.087 3.913 5 N -0.481 5.481 6 C 0.186 3.814 7 C -0.240 4.240 8 C 0.075 3.925 9 C -0.327 4.327 10 C 0.564 3.436 11 O -0.594 6.594 12 N -0.711 5.711 13 C 0.159 3.841 14 C -0.122 4.122 15 C 0.148 3.852 16 N -0.610 5.610 17 C -0.266 4.266 18 H 0.066 0.934 19 C -0.050 4.050 20 N -0.937 5.937 21 Si 0.976 3.024 22 H -0.267 1.267 23 H -0.289 1.289 24 H -0.287 1.287 25 C 0.184 3.816 26 C -0.128 4.128 27 C 0.521 3.479 28 O -0.581 6.581 29 H 0.083 0.917 30 H 0.060 0.940 31 H 0.046 0.954 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.143 0.857 38 H 0.227 0.773 39 H 0.198 0.802 40 H 0.147 0.853 41 H 0.413 0.587 42 H 0.059 0.941 43 H 0.054 0.946 44 H 0.059 0.941 45 H 0.013 0.987 46 H 0.060 0.940 47 H 0.252 0.748 48 H -0.001 1.001 49 H 0.067 0.933 50 H 0.068 0.932 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.568 32.803 14.199 37.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.131 4.131 3 C -0.208 4.208 4 C -0.032 4.032 5 N -0.186 5.186 6 C 0.056 3.944 7 C -0.261 4.261 8 C 0.051 3.949 9 C -0.334 4.334 10 C 0.354 3.646 11 O -0.478 6.478 12 N -0.370 5.370 13 C 0.054 3.946 14 C -0.163 4.163 15 C 0.022 3.978 16 N -0.333 5.333 17 C -0.396 4.396 18 H 0.084 0.916 19 C -0.245 4.245 20 N -0.583 5.583 21 Si 0.803 3.197 22 H -0.191 1.191 23 H -0.216 1.216 24 H -0.214 1.214 25 C 0.058 3.942 26 C -0.168 4.168 27 C 0.325 3.675 28 O -0.466 6.466 29 H 0.101 0.899 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.073 0.927 36 H 0.101 0.899 37 H 0.161 0.839 38 H 0.243 0.757 39 H 0.215 0.785 40 H 0.164 0.836 41 H 0.259 0.741 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.078 0.922 45 H 0.031 0.969 46 H 0.079 0.921 47 H 0.061 0.939 48 H 0.017 0.983 49 H 0.085 0.915 50 H 0.087 0.913 51 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.336 32.033 13.852 36.398 hybrid contribution -0.285 -1.472 -0.915 1.756 sum -10.621 30.561 12.936 34.844 Atomic orbital electron populations 1.21736 0.92724 1.02046 1.03425 1.21416 0.97604 0.97486 0.96561 1.21967 1.00946 0.93990 1.03871 1.22490 0.75347 1.03959 1.01449 1.45527 1.10398 1.17626 1.45077 1.23238 0.92535 0.90589 0.88045 1.21173 0.93670 1.01742 1.09528 1.22309 1.01595 0.88479 0.82508 1.20812 0.93162 1.01498 1.17907 1.18120 0.86110 0.82908 0.77481 1.90722 1.15321 1.81615 1.60115 1.46772 1.12354 1.15502 1.62398 1.20680 0.95794 0.84128 0.93968 1.22161 1.00378 0.98163 0.95548 1.20951 0.92019 0.86376 0.98457 1.44296 1.57299 1.26843 1.04911 1.19558 1.40262 0.88563 0.91175 0.91632 1.25996 1.01195 0.98083 0.99274 1.70149 1.51080 1.13102 1.23956 0.85086 0.77401 0.78428 0.78788 1.19108 1.21590 1.21378 1.20538 0.95912 0.93904 0.83881 1.22260 0.98403 0.95527 1.00606 1.16981 0.88395 0.82293 0.79816 1.90606 1.64257 1.40752 1.51023 0.89855 0.92114 0.93445 0.94129 0.92504 0.89081 0.92748 0.89930 0.83891 0.75670 0.78467 0.83572 0.74114 0.92300 0.92679 0.92219 0.96931 0.92104 0.93896 0.98326 0.91488 0.91331 0.92427 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.19 71.98 0.66 -0.44 16 2 C -0.11 -1.09 3.12 -10.80 -0.03 -1.12 16 3 C -0.15 -0.66 8.63 71.98 0.62 -0.04 16 4 C 0.09 0.77 4.83 86.38 0.42 1.19 16 5 N -0.48 -6.22 2.46 -649.70 -1.60 -7.82 16 6 C 0.19 0.75 8.20 83.56 0.69 1.43 16 7 C -0.24 -1.54 9.99 21.99 0.22 -1.32 16 8 C 0.07 1.35 9.70 22.83 0.22 1.57 16 9 C -0.33 -9.05 5.92 -19.79 -0.12 -9.17 16 10 C 0.56 21.36 7.69 86.56 0.67 22.03 16 11 O -0.59 -25.61 16.07 -4.21 -0.07 -25.68 16 12 N -0.71 -28.11 4.99 -446.00 -2.22 -30.33 16 13 C 0.16 6.92 2.38 45.02 0.11 7.03 16 14 C -0.12 -5.37 5.65 30.67 0.17 -5.20 16 15 C 0.15 7.22 6.52 86.36 0.56 7.79 16 16 N -0.61 -33.95 2.99 -699.08 -2.09 -36.04 16 17 C -0.27 -15.62 9.59 84.03 0.81 -14.82 16 18 H 0.07 3.76 7.85 -2.91 -0.02 3.74 16 19 C -0.05 -2.95 5.07 84.86 0.43 -2.52 16 20 N -0.94 -57.84 11.00 21.65 0.24 -57.60 16 21 Si 0.98 46.82 29.57 68.60 2.03 48.85 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 C 0.18 9.86 5.25 86.36 0.45 10.32 16 26 C -0.13 -5.73 5.55 30.67 0.17 -5.56 16 27 C 0.52 13.13 7.44 85.16 0.63 13.77 16 28 O -0.58 -18.89 13.27 -4.95 -0.07 -18.95 16 29 H 0.08 0.24 8.14 -2.38 -0.02 0.22 16 30 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.04 0.74 8.14 -2.38 -0.02 0.72 16 33 H 0.06 0.35 8.14 -2.39 -0.02 0.33 16 34 H 0.09 -0.14 8.14 -2.39 -0.02 -0.16 16 35 H 0.05 0.25 6.34 -2.38 -0.02 0.24 16 36 H 0.08 1.19 7.39 -2.38 -0.02 1.18 16 37 H 0.14 -0.11 8.00 -2.39 -0.02 -0.13 16 38 H 0.23 -1.73 7.88 -2.91 -0.02 -1.75 16 39 H 0.20 -0.38 8.06 -2.91 -0.02 -0.41 16 40 H 0.15 2.67 7.71 -2.91 -0.02 2.65 16 41 H 0.41 16.07 5.21 -92.76 -0.48 15.59 16 42 H 0.06 2.78 7.65 -2.39 -0.02 2.76 16 43 H 0.05 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.06 2.55 8.09 -2.39 -0.02 2.53 16 45 H 0.01 0.63 8.14 -2.39 -0.02 0.62 16 46 H 0.06 2.84 7.93 -2.38 -0.02 2.82 16 47 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 48 H 0.00 -0.08 8.14 -2.39 -0.02 -0.10 16 49 H 0.07 3.93 6.08 -2.39 -0.01 3.92 16 50 H 0.07 2.81 8.14 -2.39 -0.02 2.79 16 51 H 0.06 2.58 8.14 -2.39 -0.02 2.57 16 Total: -1.00 -85.81 402.41 3.33 -82.47 By element: Atomic # 1 Polarization: 19.73 SS G_CDS: 0.44 Total: 20.16 kcal Atomic # 6 Polarization: 18.25 SS G_CDS: 6.68 Total: 24.93 kcal Atomic # 7 Polarization: -126.11 SS G_CDS: -5.68 Total: -131.79 kcal Atomic # 8 Polarization: -44.50 SS G_CDS: -0.13 Total: -44.63 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -85.81 3.33 -82.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932216288.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.769 kcal (2) G-P(sol) polarization free energy of solvation -85.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.335 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds