Wall clock time and date at job start Wed Apr 1 2020 05:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47099 * 2 1 4 4 C 1.52998 * 109.47125 * 239.99585 * 2 1 3 5 5 C 1.50706 * 109.46803 * 120.00333 * 2 1 3 6 6 O 1.21277 * 120.00004 * 359.97438 * 5 2 1 7 7 N 1.34779 * 119.99894 * 180.02562 * 5 2 1 8 8 C 1.46496 * 120.00031 * 179.97438 * 7 5 2 9 9 C 1.52996 * 109.46910 * 179.97438 * 8 7 5 10 10 N 1.46508 * 109.46978 * 180.02562 * 9 8 7 11 11 C 1.34773 * 119.99685 * 180.02562 * 10 9 8 12 12 O 1.21585 * 120.00392 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99408 * 179.97438 * 11 10 9 14 14 C 1.39946 * 119.99668 * 185.31755 * 13 11 10 15 15 C 1.38867 * 120.07245 * 33.27260 * 14 13 11 16 16 C 1.38114 * 119.92873 * 180.02562 * 15 14 13 17 17 C 1.38277 * 120.07221 * 0.02562 * 16 15 14 18 18 C 1.50705 * 119.93000 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47097 * 89.99640 * 18 17 16 20 20 H 1.07994 * 120.00358 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99658 * 180.27609 * 19 18 17 22 22 N 1.31516 * 120.00042 * 359.72167 * 21 19 18 23 23 Si 1.86802 * 119.99976 * 179.72196 * 21 19 18 24 24 H 1.48506 * 109.46707 * 59.99672 * 23 21 19 25 25 H 1.48495 * 109.47102 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47309 * 300.00323 * 23 21 19 27 27 C 1.38280 * 120.14120 * 0.23027 * 17 16 15 28 28 C 1.38113 * 120.06925 * 359.48905 * 27 17 16 29 29 H 1.09007 * 109.47117 * 300.00260 * 1 2 3 30 30 H 1.09001 * 109.47047 * 59.99586 * 1 2 3 31 31 H 1.08997 * 109.47596 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46696 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47426 * 299.99638 * 3 2 1 34 34 H 1.09000 * 109.47304 * 60.00303 * 3 2 1 35 35 H 1.08997 * 109.47247 * 300.00658 * 4 2 1 36 36 H 1.09004 * 109.46717 * 60.00007 * 4 2 1 37 37 H 1.08993 * 109.47455 * 180.02562 * 4 2 1 38 38 H 0.97000 * 119.99701 * 359.97438 * 7 5 2 39 39 H 1.09008 * 109.46789 * 59.99959 * 8 7 5 40 40 H 1.08995 * 109.47370 * 299.99967 * 8 7 5 41 41 H 1.08997 * 109.47346 * 60.00266 * 9 8 7 42 42 H 1.09007 * 109.47396 * 299.99958 * 9 8 7 43 43 H 0.96991 * 119.99914 * 359.97438 * 10 9 8 44 44 H 0.96999 * 120.00622 * 5.31950 * 13 11 10 45 45 H 1.07999 * 120.03264 * 359.97438 * 15 14 13 46 46 H 1.08006 * 119.96203 * 179.97438 * 16 15 14 47 47 H 1.09002 * 109.47011 * 329.99528 * 18 17 16 48 48 H 1.09001 * 109.47190 * 209.99570 * 18 17 16 49 49 H 0.96998 * 119.99666 * 179.97438 * 22 21 19 50 50 H 1.08001 * 119.96607 * 179.73083 * 27 17 16 51 51 H 1.08003 * 120.04104 * 180.25210 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2305 6 8 1.2441 -1.1710 2.0290 7 7 3.3574 -0.8332 1.4441 8 6 3.8457 -1.5234 2.6405 9 6 5.3756 -1.5235 2.6404 10 7 5.8639 -2.2143 3.8366 11 6 7.1890 -2.3371 4.0500 12 8 7.9791 -1.8742 3.2502 13 7 7.6382 -2.9721 5.1507 14 6 9.0091 -3.0032 5.4300 15 6 9.8146 -1.9265 5.0830 16 6 11.1673 -1.9606 5.3596 17 6 11.7199 -3.0654 5.9809 18 6 13.1964 -3.0994 6.2807 19 6 13.4447 -2.5192 7.6492 20 1 12.6162 -2.1613 8.2424 21 6 14.7301 -2.4397 8.1414 22 7 15.7391 -2.8752 7.4188 23 14 15.0387 -1.7134 9.8346 24 1 14.3123 -2.5111 10.8551 25 1 16.4941 -1.7426 10.1279 26 1 14.5547 -0.3099 9.8669 27 6 10.9215 -4.1414 6.3230 28 6 9.5671 -4.1111 6.0544 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1299 -0.7218 -1.2490 38 1 3.9877 -0.4646 0.8056 39 1 3.4825 -2.5512 2.6406 40 1 3.4820 -1.0095 3.5302 41 1 5.7390 -0.4959 2.6400 42 1 5.7389 -2.0377 1.7506 43 1 5.2336 -2.5826 4.4752 44 1 7.0113 -3.4076 5.7493 45 1 9.3838 -1.0638 4.5966 46 1 11.7943 -1.1236 5.0895 47 1 13.7323 -2.5126 5.5346 48 1 13.5490 -4.1305 6.2537 49 1 16.6434 -2.8189 7.7650 50 1 11.3568 -5.0047 6.8043 51 1 8.9432 -4.9500 6.3255 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000932575929.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:07 Heat of formation + Delta-G solvation = -59.929985 kcal Electronic energy + Delta-G solvation = -28670.442464 eV Core-core repulsion = 24568.996925 eV Total energy + Delta-G solvation = -4101.445539 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.75870 -40.46355 -38.44201 -36.60822 -36.02545 -34.85867 -34.31395 -32.97362 -30.65414 -30.27037 -29.26857 -27.94782 -27.61457 -26.50285 -24.33404 -23.15183 -22.57551 -22.35281 -21.22920 -20.17200 -19.91518 -18.61582 -17.52388 -17.07558 -16.58228 -16.45968 -16.27920 -15.65767 -15.30777 -14.92025 -14.86325 -14.73478 -14.47212 -14.31586 -14.19555 -14.01331 -13.69765 -13.03063 -12.95173 -12.84502 -12.79506 -12.61207 -12.51071 -12.32645 -12.28005 -12.26654 -11.97296 -11.53177 -11.49953 -11.37946 -11.25726 -10.82054 -10.62546 -10.41620 -10.25225 -10.15747 -9.91079 -9.65667 -9.47700 -9.41756 -9.24882 -8.40043 -8.26498 -7.34250 -6.01536 -4.05662 1.93489 2.08263 2.15637 2.19925 2.88303 3.11083 3.33222 3.37375 3.40571 3.96375 4.10091 4.12638 4.22003 4.28101 4.40306 4.55768 4.59555 4.63853 4.91253 4.96261 5.03582 5.13191 5.24591 5.32154 5.32299 5.33615 5.36443 5.37025 5.44687 5.53785 5.58493 5.62872 5.73925 5.82735 5.94086 6.02088 6.06333 6.14340 6.22465 6.51785 6.67763 6.91803 6.94187 7.02260 7.19414 7.23766 7.54072 7.70216 7.73945 7.80280 7.89585 7.94130 8.34882 8.42834 8.99485 9.57927 11.07976 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029156 B = 0.001370 C = 0.001360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.129513 B =20431.305984 C =20585.578023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.142 4.142 5 C 0.525 3.475 6 O -0.536 6.536 7 N -0.726 5.726 8 C 0.108 3.892 9 C 0.129 3.871 10 N -0.745 5.745 11 C 0.704 3.296 12 O -0.569 6.569 13 N -0.680 5.680 14 C 0.122 3.878 15 C -0.117 4.117 16 C -0.107 4.107 17 C -0.044 4.044 18 C 0.048 3.952 19 C -0.512 4.512 20 H 0.057 0.943 21 C 0.058 3.942 22 N -0.894 5.894 23 Si 0.895 3.105 24 H -0.276 1.276 25 H -0.287 1.287 26 H -0.276 1.276 27 C -0.107 4.107 28 C -0.145 4.145 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.061 0.939 38 H 0.404 0.596 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.074 0.926 43 H 0.398 0.602 44 H 0.402 0.598 45 H 0.124 0.876 46 H 0.121 0.879 47 H 0.029 0.971 48 H 0.028 0.972 49 H 0.262 0.738 50 H 0.122 0.878 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.287 4.096 -15.335 34.194 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.200 4.200 4 C -0.200 4.200 5 C 0.311 3.689 6 O -0.412 6.412 7 N -0.379 5.379 8 C -0.016 4.016 9 C 0.004 3.996 10 N -0.402 5.402 11 C 0.404 3.596 12 O -0.445 6.445 13 N -0.327 5.327 14 C 0.029 3.971 15 C -0.137 4.137 16 C -0.126 4.126 17 C -0.045 4.045 18 C 0.011 3.989 19 C -0.550 4.550 20 H 0.075 0.925 21 C -0.143 4.143 22 N -0.533 5.533 23 Si 0.723 3.277 24 H -0.202 1.202 25 H -0.213 1.213 26 H -0.202 1.202 27 C -0.126 4.126 28 C -0.166 4.166 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.080 0.920 38 H 0.239 0.761 39 H 0.093 0.907 40 H 0.094 0.906 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.232 0.768 44 H 0.236 0.764 45 H 0.142 0.858 46 H 0.139 0.861 47 H 0.047 0.953 48 H 0.047 0.953 49 H 0.072 0.928 50 H 0.140 0.860 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -29.972 4.193 -15.513 34.008 hybrid contribution -0.055 0.125 1.303 1.311 sum -30.027 4.318 -14.209 33.499 Atomic orbital electron populations 1.21676 0.91756 1.02956 1.02226 1.20829 0.98222 0.96487 0.93372 1.21890 1.01315 0.93596 1.03175 1.21889 1.01308 1.00716 0.96055 1.20631 0.81711 0.79202 0.87359 1.90713 1.55257 1.48269 1.46984 1.45791 1.07511 1.59296 1.25338 1.21420 0.92949 0.98477 0.88797 1.21217 0.91937 0.98323 0.88116 1.44814 1.05617 1.63099 1.26687 1.15835 0.82186 0.79668 0.81919 1.90973 1.54276 1.53099 1.46183 1.42443 1.07102 1.57775 1.25348 1.17283 0.81376 0.95374 1.03045 1.20999 0.93962 0.97378 1.01383 1.20989 0.93835 0.98594 0.99145 1.20704 0.99152 0.92133 0.92483 1.18343 0.85205 0.98243 0.97071 1.21041 0.92550 1.40699 1.00728 0.92511 1.25008 0.96142 0.95521 0.97620 1.69951 0.99196 1.46776 1.37407 0.86605 0.77004 0.79764 0.84352 1.20199 1.21256 1.20195 1.20867 0.92132 0.99236 1.00336 1.20705 0.95653 0.96122 1.04074 0.91864 0.91854 0.91878 0.91981 0.91096 0.91916 0.91934 0.91099 0.91986 0.76121 0.90676 0.90636 0.90716 0.90761 0.76763 0.76369 0.85786 0.86116 0.95306 0.95331 0.92816 0.86006 0.86848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.71 7.76 37.16 0.29 -0.42 16 2 C -0.09 -0.43 0.87 -155.66 -0.14 -0.57 16 3 C -0.14 -0.52 8.37 37.15 0.31 -0.21 16 4 C -0.14 -0.51 8.37 37.16 0.31 -0.20 16 5 C 0.52 3.98 6.48 -10.98 -0.07 3.91 16 6 O -0.54 -6.21 15.98 5.56 0.09 -6.12 16 7 N -0.73 -4.00 5.34 -60.30 -0.32 -4.32 16 8 C 0.11 0.63 5.79 -4.05 -0.02 0.61 16 9 C 0.13 0.89 5.79 -4.04 -0.02 0.86 16 10 N -0.74 -6.03 5.56 -65.22 -0.36 -6.39 16 11 C 0.70 9.01 8.30 -86.92 -0.72 8.29 16 12 O -0.57 -9.72 14.02 5.29 0.07 -9.65 16 13 N -0.68 -8.34 5.35 -14.22 -0.08 -8.42 16 14 C 0.12 2.00 6.28 -83.68 -0.53 1.48 16 15 C -0.12 -2.18 8.66 -39.39 -0.34 -2.52 16 16 C -0.11 -2.20 9.69 -39.61 -0.38 -2.58 16 17 C -0.04 -0.97 5.07 -104.59 -0.53 -1.50 16 18 C 0.05 1.25 5.10 -29.03 -0.15 1.10 16 19 C -0.51 -14.37 9.09 -34.44 -0.31 -14.68 16 20 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 21 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 22 N -0.89 -26.48 13.29 55.43 0.74 -25.75 16 23 Si 0.90 21.55 29.54 -169.99 -5.02 16.53 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 26 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 27 C -0.11 -2.06 9.69 -39.61 -0.38 -2.45 16 28 C -0.14 -2.36 9.96 -39.39 -0.39 -2.75 16 29 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 30 H 0.06 0.24 8.14 -51.93 -0.42 -0.18 16 31 H 0.06 0.41 8.10 -51.93 -0.42 -0.01 16 32 H 0.06 0.17 7.56 -51.93 -0.39 -0.22 16 33 H 0.07 0.19 8.14 -51.93 -0.42 -0.24 16 34 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 37 H 0.06 0.17 7.56 -51.93 -0.39 -0.23 16 38 H 0.40 1.37 7.31 -40.82 -0.30 1.07 16 39 H 0.07 0.47 8.14 -51.92 -0.42 0.05 16 40 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.40 2.07 8.49 -40.82 -0.35 1.72 16 44 H 0.40 3.39 8.83 -40.82 -0.36 3.03 16 45 H 0.12 2.29 6.41 -52.49 -0.34 1.95 16 46 H 0.12 2.43 8.06 -52.48 -0.42 2.01 16 47 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 48 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 49 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 50 H 0.12 2.25 8.06 -52.49 -0.42 1.82 16 51 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 LS Contribution 423.18 15.07 6.38 6.38 Total: -1.00 -35.94 423.18 -10.11 -46.05 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: -8.42 Total: 1.76 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: -3.18 Total: -10.06 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: -0.02 Total: -44.88 kcal Atomic # 8 Polarization: -15.93 SS G_CDS: 0.16 Total: -15.77 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -35.94 -10.11 -46.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932575929.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.885 kcal (2) G-P(sol) polarization free energy of solvation -35.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.822 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds