Wall clock time and date at job start Wed Apr 1 2020 05:16:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47099 * 2 1 4 4 C 1.52998 * 109.47125 * 239.99585 * 2 1 3 5 5 C 1.50706 * 109.46803 * 120.00333 * 2 1 3 6 6 O 1.21277 * 120.00004 * 359.97438 * 5 2 1 7 7 N 1.34779 * 119.99894 * 180.02562 * 5 2 1 8 8 C 1.46496 * 120.00031 * 179.97438 * 7 5 2 9 9 C 1.52996 * 109.46910 * 179.97438 * 8 7 5 10 10 N 1.46508 * 109.46978 * 180.02562 * 9 8 7 11 11 C 1.34773 * 119.99685 * 180.02562 * 10 9 8 12 12 O 1.21585 * 120.00392 * 0.02562 * 11 10 9 13 13 N 1.34780 * 119.99408 * 179.97438 * 11 10 9 14 14 C 1.39946 * 119.99668 * 185.31755 * 13 11 10 15 15 C 1.38867 * 120.07245 * 33.27260 * 14 13 11 16 16 C 1.38114 * 119.92873 * 180.02562 * 15 14 13 17 17 C 1.38277 * 120.07221 * 0.02562 * 16 15 14 18 18 C 1.50705 * 119.93000 * 179.97438 * 17 16 15 19 19 C 1.50700 * 109.47097 * 89.99640 * 18 17 16 20 20 H 1.07994 * 120.00358 * 359.97438 * 19 18 17 21 21 C 1.37879 * 119.99658 * 180.27609 * 19 18 17 22 22 N 1.31516 * 120.00042 * 359.72167 * 21 19 18 23 23 Si 1.86802 * 119.99976 * 179.72196 * 21 19 18 24 24 H 1.48506 * 109.46707 * 59.99672 * 23 21 19 25 25 H 1.48495 * 109.47102 * 179.97438 * 23 21 19 26 26 H 1.48497 * 109.47309 * 300.00323 * 23 21 19 27 27 C 1.38280 * 120.14120 * 0.23027 * 17 16 15 28 28 C 1.38113 * 120.06925 * 359.48905 * 27 17 16 29 29 H 1.09007 * 109.47117 * 300.00260 * 1 2 3 30 30 H 1.09001 * 109.47047 * 59.99586 * 1 2 3 31 31 H 1.08997 * 109.47596 * 179.97438 * 1 2 3 32 32 H 1.09007 * 109.46696 * 179.97438 * 3 2 1 33 33 H 1.08997 * 109.47426 * 299.99638 * 3 2 1 34 34 H 1.09000 * 109.47304 * 60.00303 * 3 2 1 35 35 H 1.08997 * 109.47247 * 300.00658 * 4 2 1 36 36 H 1.09004 * 109.46717 * 60.00007 * 4 2 1 37 37 H 1.08993 * 109.47455 * 180.02562 * 4 2 1 38 38 H 0.97000 * 119.99701 * 359.97438 * 7 5 2 39 39 H 1.09008 * 109.46789 * 59.99959 * 8 7 5 40 40 H 1.08995 * 109.47370 * 299.99967 * 8 7 5 41 41 H 1.08997 * 109.47346 * 60.00266 * 9 8 7 42 42 H 1.09007 * 109.47396 * 299.99958 * 9 8 7 43 43 H 0.96991 * 119.99914 * 359.97438 * 10 9 8 44 44 H 0.96999 * 120.00622 * 5.31950 * 13 11 10 45 45 H 1.07999 * 120.03264 * 359.97438 * 15 14 13 46 46 H 1.08006 * 119.96203 * 179.97438 * 16 15 14 47 47 H 1.09002 * 109.47011 * 329.99528 * 18 17 16 48 48 H 1.09001 * 109.47190 * 209.99570 * 18 17 16 49 49 H 0.96998 * 119.99666 * 179.97438 * 22 21 19 50 50 H 1.08001 * 119.96607 * 179.73083 * 27 17 16 51 51 H 1.08003 * 120.04104 * 180.25210 * 28 27 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0323 -0.7105 1.2305 6 8 1.2441 -1.1710 2.0290 7 7 3.3574 -0.8332 1.4441 8 6 3.8457 -1.5234 2.6405 9 6 5.3756 -1.5235 2.6404 10 7 5.8639 -2.2143 3.8366 11 6 7.1890 -2.3371 4.0500 12 8 7.9791 -1.8742 3.2502 13 7 7.6382 -2.9721 5.1507 14 6 9.0091 -3.0032 5.4300 15 6 9.8146 -1.9265 5.0830 16 6 11.1673 -1.9606 5.3596 17 6 11.7199 -3.0654 5.9809 18 6 13.1964 -3.0994 6.2807 19 6 13.4447 -2.5192 7.6492 20 1 12.6162 -2.1613 8.2424 21 6 14.7301 -2.4397 8.1414 22 7 15.7391 -2.8752 7.4188 23 14 15.0387 -1.7134 9.8346 24 1 14.3123 -2.5111 10.8551 25 1 16.4941 -1.7426 10.1279 26 1 14.5547 -0.3099 9.8669 27 6 10.9215 -4.1414 6.3230 28 6 9.5671 -4.1111 6.0544 29 1 -0.3634 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1301 1.4424 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6766 -1.7489 -1.2492 36 1 1.6766 -0.2075 -2.1392 37 1 3.1299 -0.7218 -1.2490 38 1 3.9877 -0.4646 0.8056 39 1 3.4825 -2.5512 2.6406 40 1 3.4820 -1.0095 3.5302 41 1 5.7390 -0.4959 2.6400 42 1 5.7389 -2.0377 1.7506 43 1 5.2336 -2.5826 4.4752 44 1 7.0113 -3.4076 5.7493 45 1 9.3838 -1.0638 4.5966 46 1 11.7943 -1.1236 5.0895 47 1 13.7323 -2.5126 5.5346 48 1 13.5490 -4.1305 6.2537 49 1 16.6434 -2.8189 7.7650 50 1 11.3568 -5.0047 6.8043 51 1 8.9432 -4.9500 6.3255 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000932575929.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:06 Heat of formation + Delta-G solvation = -84.772532 kcal Electronic energy + Delta-G solvation = -28671.519718 eV Core-core repulsion = 24568.996925 eV Total energy + Delta-G solvation = -4102.522793 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.69109 -41.19614 -39.79058 -37.30159 -36.58527 -36.19289 -35.17310 -34.82495 -32.23633 -31.74297 -30.15391 -28.28995 -28.21545 -27.92155 -25.41845 -24.52357 -23.79519 -23.13270 -22.44032 -21.56860 -20.45252 -19.59888 -18.60170 -18.45743 -17.70484 -17.22671 -17.13094 -16.81125 -16.45787 -16.12099 -15.93317 -15.78830 -15.41011 -15.17191 -15.06896 -14.70903 -14.54734 -14.46296 -14.35812 -14.22873 -13.67369 -13.31575 -13.29276 -13.18311 -13.08716 -12.98271 -12.88534 -12.81003 -12.61984 -12.58342 -12.45578 -12.04503 -11.90441 -11.84919 -11.69982 -11.55124 -11.30555 -10.93129 -10.77020 -10.57933 -10.28470 -10.15153 -9.73712 -8.80825 -8.16037 -6.31104 0.50580 0.60256 1.37592 1.41271 1.44055 1.52282 1.58583 2.03871 2.23995 2.41944 3.04646 3.12947 3.22132 3.56802 3.65298 3.84804 3.91838 4.01876 4.07641 4.18038 4.26494 4.37445 4.41214 4.61445 4.68047 4.70869 4.72545 4.73590 4.81129 4.83163 4.83521 4.95454 4.95673 5.01522 5.13985 5.20338 5.27090 5.31306 5.33321 5.34058 5.35291 5.39977 5.44072 5.51627 5.64435 5.77866 5.92973 6.11609 6.15206 6.28555 6.44802 6.81545 6.94549 7.17261 7.37339 7.44761 8.91492 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.029156 B = 0.001370 C = 0.001360 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 960.129513 B =20431.305984 C =20585.578023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.083 4.083 3 C -0.140 4.140 4 C -0.140 4.140 5 C 0.520 3.480 6 O -0.582 6.582 7 N -0.716 5.716 8 C 0.117 3.883 9 C 0.135 3.865 10 N -0.724 5.724 11 C 0.701 3.299 12 O -0.613 6.613 13 N -0.667 5.667 14 C 0.139 3.861 15 C -0.123 4.123 16 C -0.119 4.119 17 C -0.077 4.077 18 C 0.057 3.943 19 C -0.529 4.529 20 H 0.056 0.944 21 C 0.005 3.995 22 N -0.931 5.931 23 Si 0.966 3.034 24 H -0.265 1.265 25 H -0.281 1.281 26 H -0.270 1.270 27 C -0.112 4.112 28 C -0.129 4.129 29 H 0.047 0.953 30 H 0.083 0.917 31 H 0.048 0.952 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.416 0.584 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.073 0.927 43 H 0.416 0.584 44 H 0.425 0.575 45 H 0.124 0.876 46 H 0.109 0.891 47 H -0.001 1.001 48 H 0.006 0.994 49 H 0.265 0.735 50 H 0.126 0.874 51 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -32.672 4.185 -15.121 36.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.086 4.086 3 C -0.198 4.198 4 C -0.197 4.197 5 C 0.308 3.692 6 O -0.462 6.462 7 N -0.369 5.369 8 C -0.007 4.007 9 C 0.010 3.990 10 N -0.381 5.381 11 C 0.401 3.599 12 O -0.493 6.493 13 N -0.316 5.316 14 C 0.045 3.955 15 C -0.144 4.144 16 C -0.138 4.138 17 C -0.078 4.078 18 C 0.021 3.979 19 C -0.567 4.567 20 H 0.074 0.926 21 C -0.194 4.194 22 N -0.571 5.571 23 Si 0.790 3.210 24 H -0.190 1.190 25 H -0.206 1.206 26 H -0.195 1.195 27 C -0.131 4.131 28 C -0.150 4.150 29 H 0.066 0.934 30 H 0.102 0.898 31 H 0.067 0.933 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.104 0.896 37 H 0.092 0.908 38 H 0.253 0.747 39 H 0.093 0.907 40 H 0.092 0.908 41 H 0.091 0.909 42 H 0.092 0.908 43 H 0.253 0.747 44 H 0.263 0.737 45 H 0.142 0.858 46 H 0.127 0.873 47 H 0.017 0.983 48 H 0.025 0.975 49 H 0.074 0.926 50 H 0.144 0.856 51 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -32.417 4.274 -15.298 36.100 hybrid contribution 0.559 0.088 1.142 1.274 sum -31.859 4.362 -14.157 35.134 Atomic orbital electron populations 1.21683 0.92420 1.02076 1.02456 1.20857 0.97727 0.97274 0.92759 1.21902 1.02062 0.92400 1.03410 1.21899 1.02063 1.00083 0.95701 1.21148 0.81803 0.78636 0.87618 1.90691 1.56426 1.50367 1.48671 1.45726 1.07266 1.58576 1.25349 1.21288 0.92001 0.98517 0.88922 1.21221 0.92326 0.98001 0.87474 1.44626 1.04237 1.62053 1.27215 1.15996 0.83161 0.79237 0.81465 1.90960 1.55815 1.54800 1.47676 1.42236 1.05794 1.57802 1.25768 1.17328 0.83048 0.94269 1.00900 1.21003 0.93247 0.98425 1.01701 1.20903 0.94930 0.98082 0.99867 1.20392 0.97195 0.94402 0.95829 1.18081 0.88154 0.95994 0.95713 1.21380 0.92847 1.40796 1.01686 0.92574 1.25932 0.95803 0.95767 1.01854 1.70082 0.99665 1.47907 1.39433 0.85494 0.77130 0.79119 0.79276 1.19015 1.20627 1.19473 1.20960 0.93473 0.98377 1.00256 1.20995 0.94577 0.97065 1.02328 0.93372 0.89829 0.93325 0.90798 0.89605 0.92970 0.92912 0.89617 0.90789 0.74689 0.90681 0.90805 0.90925 0.90836 0.74673 0.73676 0.85786 0.87274 0.98316 0.97545 0.92613 0.85618 0.82353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.36 7.76 71.98 0.56 -0.80 16 2 C -0.08 -0.72 0.87 -52.93 -0.05 -0.77 16 3 C -0.14 -0.75 8.37 71.98 0.60 -0.14 16 4 C -0.14 -0.72 8.37 71.98 0.60 -0.12 16 5 C 0.52 7.44 6.48 87.66 0.57 8.01 16 6 O -0.58 -13.47 15.98 -3.02 -0.05 -13.52 16 7 N -0.72 -6.71 5.34 -463.07 -2.47 -9.18 16 8 C 0.12 1.15 5.79 86.38 0.50 1.65 16 9 C 0.13 1.55 5.79 86.38 0.50 2.05 16 10 N -0.72 -9.66 5.56 -478.52 -2.66 -12.32 16 11 C 0.70 16.19 8.30 179.05 1.49 17.67 16 12 O -0.61 -20.08 14.02 -3.98 -0.06 -20.14 16 13 N -0.67 -14.14 5.35 -317.17 -1.70 -15.84 16 14 C 0.14 4.23 6.28 38.15 0.24 4.47 16 15 C -0.12 -4.53 8.66 22.39 0.19 -4.34 16 16 C -0.12 -5.05 9.69 22.25 0.22 -4.84 16 17 C -0.08 -3.52 5.07 -19.84 -0.10 -3.62 16 18 C 0.06 3.15 5.10 29.10 0.15 3.30 16 19 C -0.53 -30.61 9.09 25.60 0.23 -30.37 16 20 H 0.06 3.17 7.74 -2.91 -0.02 3.15 16 21 C 0.00 0.26 5.46 84.66 0.46 0.72 16 22 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 23 Si 0.97 44.50 29.54 68.60 2.03 46.53 16 24 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 25 H -0.28 -12.58 7.11 99.48 0.71 -11.88 16 26 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 27 C -0.11 -4.25 9.69 22.25 0.22 -4.04 16 28 C -0.13 -3.83 9.96 22.39 0.22 -3.61 16 29 H 0.05 0.64 8.10 -2.38 -0.02 0.62 16 30 H 0.08 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.05 0.64 8.10 -2.39 -0.02 0.62 16 32 H 0.07 0.22 7.56 -2.38 -0.02 0.20 16 33 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.05 0.40 8.14 -2.39 -0.02 0.38 16 35 H 0.05 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.08 0.21 8.14 -2.38 -0.02 0.20 16 37 H 0.07 0.20 7.56 -2.39 -0.02 0.19 16 38 H 0.42 1.91 7.31 -92.71 -0.68 1.23 16 39 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 40 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 41 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 42 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 43 H 0.42 2.85 8.49 -92.72 -0.79 2.06 16 44 H 0.42 5.25 8.83 -92.71 -0.82 4.43 16 45 H 0.12 4.56 6.41 -2.91 -0.02 4.54 16 46 H 0.11 4.70 8.06 -2.91 -0.02 4.68 16 47 H 0.00 -0.09 8.08 -2.39 -0.02 -0.11 16 48 H 0.01 0.36 8.08 -2.39 -0.02 0.34 16 49 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 50 H 0.13 4.59 8.06 -2.91 -0.02 4.56 16 51 H 0.16 3.28 8.06 -2.91 -0.02 3.26 16 Total: -1.00 -81.35 423.18 0.65 -80.70 By element: Atomic # 1 Polarization: 16.31 SS G_CDS: -1.33 Total: 14.98 kcal Atomic # 6 Polarization: -21.38 SS G_CDS: 6.60 Total: -14.78 kcal Atomic # 7 Polarization: -87.23 SS G_CDS: -6.55 Total: -93.78 kcal Atomic # 8 Polarization: -33.55 SS G_CDS: -0.10 Total: -33.66 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -81.35 0.65 -80.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000932575929.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.068 kcal (2) G-P(sol) polarization free energy of solvation -81.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds