Wall clock time and date at job start Wed Apr 1 2020 05:30:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47251 * 2 1 4 4 C 1.53000 * 109.47247 * 120.00329 * 2 1 3 5 5 N 1.46502 * 109.47177 * 174.99878 * 4 2 1 6 6 C 1.35440 * 119.46981 * 89.99829 * 5 4 2 7 7 C 1.35754 * 121.22585 * 180.02562 * 6 5 4 8 8 C 1.39463 * 120.13588 * 0.02562 * 7 6 5 9 9 C 1.39338 * 118.95851 * 359.97438 * 8 7 6 10 10 C 1.47089 * 120.58805 * 179.97438 * 9 8 7 11 11 O 1.21640 * 119.99913 * 258.67637 * 10 9 8 12 12 N 1.34777 * 119.99818 * 78.67224 * 10 9 8 13 13 C 1.47022 * 125.64882 * 355.03021 * 12 10 9 14 14 C 1.54322 * 107.27271 * 181.03746 * 13 12 10 15 15 C 1.55157 * 102.94165 * 22.18848 * 14 13 12 16 16 H 1.09005 * 111.00025 * 82.57761 * 15 14 13 17 17 N 1.46496 * 111.00285 * 206.42436 * 15 14 13 18 18 C 1.46502 * 120.00129 * 53.65659 * 17 15 14 19 19 C 1.36942 * 119.99952 * 233.64984 * 17 15 14 20 20 H 1.08003 * 119.99878 * 24.11221 * 19 17 15 21 21 C 1.38815 * 120.00063 * 204.11822 * 19 17 15 22 22 N 1.31612 * 119.99822 * 9.58367 * 21 19 17 23 23 Si 1.86806 * 119.99815 * 189.58640 * 21 19 17 24 24 H 1.48498 * 109.47071 * 89.99709 * 23 21 19 25 25 H 1.48500 * 109.46906 * 209.99714 * 23 21 19 26 26 H 1.48498 * 109.47024 * 329.99696 * 23 21 19 27 27 C 1.47423 * 125.64976 * 175.00109 * 12 10 9 28 28 C 1.34650 * 119.47102 * 270.26503 * 5 4 2 29 29 O 1.21889 * 120.10700 * 0.02562 * 28 5 4 30 30 H 1.09001 * 109.46849 * 299.99663 * 1 2 3 31 31 H 1.08999 * 109.47245 * 59.99708 * 1 2 3 32 32 H 1.09002 * 109.47217 * 179.97438 * 1 2 3 33 33 H 1.09009 * 109.46935 * 240.00010 * 2 1 3 34 34 H 1.08995 * 109.47030 * 59.99931 * 3 2 1 35 35 H 1.08999 * 109.47337 * 180.02562 * 3 2 1 36 36 H 1.09005 * 109.46750 * 299.99823 * 3 2 1 37 37 H 1.08998 * 109.47440 * 54.99584 * 4 2 1 38 38 H 1.09000 * 109.46784 * 294.99475 * 4 2 1 39 39 H 1.07995 * 119.38251 * 359.97438 * 6 5 4 40 40 H 1.08004 * 119.93001 * 179.97438 * 7 6 5 41 41 H 1.08007 * 120.52416 * 179.97438 * 8 7 6 42 42 H 1.09005 * 109.88134 * 300.45506 * 13 12 10 43 43 H 1.09001 * 109.88687 * 61.46193 * 13 12 10 44 44 H 1.09000 * 110.72156 * 140.55463 * 14 13 12 45 45 H 1.08999 * 110.71644 * 263.65233 * 14 13 12 46 46 H 1.09001 * 109.47201 * 94.93387 * 18 17 15 47 47 H 1.09004 * 109.46598 * 214.93257 * 18 17 15 48 48 H 1.08998 * 109.46946 * 334.93102 * 18 17 15 49 49 H 0.97006 * 119.99624 * 180.02562 * 22 21 19 50 50 H 1.09000 * 110.36463 * 274.73526 * 27 12 10 51 51 H 1.08999 * 110.36132 * 37.05759 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.2610 0.1601 1.7215 7 6 5.6168 0.0995 1.6863 8 6 6.2538 -0.9916 1.0958 9 6 5.4773 -2.0104 0.5475 10 6 6.1117 -3.1773 -0.0846 11 8 6.1849 -3.2476 -1.2968 12 7 6.6118 -4.1687 0.6794 13 6 6.6836 -4.1658 2.1478 14 6 7.3513 -5.4893 2.5766 15 6 8.1311 -5.9133 1.3040 16 1 9.0913 -5.4005 1.2452 17 7 8.3107 -7.3665 1.2579 18 6 7.1498 -8.2521 1.3773 19 6 9.5636 -7.8970 1.1031 20 1 10.4319 -7.3259 1.3969 21 6 9.7176 -9.1688 0.5686 22 7 8.6852 -9.7890 0.0377 23 14 11.3902 -10.0001 0.6028 24 1 11.5293 -10.7810 1.8583 25 1 11.5140 -10.9113 -0.5632 26 1 12.4568 -8.9688 0.5406 27 6 7.1770 -5.4358 0.1810 28 6 4.0639 -1.8998 0.6047 29 8 3.3624 -2.7750 0.1276 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9563 -0.8901 37 1 1.6054 -1.7198 1.2951 38 1 1.7517 -0.1583 2.1369 39 1 3.7803 1.0112 2.1806 40 1 6.2032 0.8983 2.1158 41 1 7.3320 -1.0461 1.0640 42 1 7.2827 -3.3211 2.4880 43 1 5.6798 -4.1012 2.5680 44 1 8.0339 -5.3246 3.4102 45 1 6.5992 -6.2339 2.8372 46 1 6.7968 -8.5245 0.3826 47 1 7.4345 -9.1529 1.9211 48 1 6.3545 -7.7379 1.9169 49 1 8.7928 -10.6779 -0.3355 50 1 6.3848 -6.1670 0.0198 51 1 7.7318 -5.2666 -0.7418 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000972488879.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:32 Heat of formation + Delta-G solvation = -6.329874 kcal Electronic energy + Delta-G solvation = -31224.127056 eV Core-core repulsion = 27125.005792 eV Total energy + Delta-G solvation = -4099.121264 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -41.76962 -39.50099 -37.50297 -37.07002 -36.58774 -34.72135 -33.66577 -31.61732 -30.39947 -29.57343 -27.89074 -27.71904 -27.35085 -26.01177 -25.10044 -23.22396 -23.01965 -22.25204 -20.81070 -19.71986 -19.22569 -17.72921 -17.69080 -17.02194 -16.97997 -16.28382 -16.04581 -15.68352 -15.40966 -14.98088 -14.74183 -14.53206 -14.18710 -13.82852 -13.47491 -13.33860 -13.24376 -13.05489 -12.84203 -12.68374 -12.57698 -12.42735 -12.32528 -12.22430 -12.02922 -11.88513 -11.76874 -11.45920 -11.41289 -11.20777 -10.85849 -10.79823 -10.46576 -10.37504 -10.31021 -10.21538 -10.15619 -9.85731 -9.78247 -9.58032 -8.56283 -8.22369 -8.16110 -6.75976 -5.72198 -3.21733 0.36931 1.62489 2.16946 2.94113 3.19076 3.39152 3.44761 3.47012 3.51826 4.10808 4.18768 4.29234 4.48332 4.50317 4.56519 4.60913 4.76925 4.80254 4.98090 5.07460 5.09136 5.10146 5.23244 5.30665 5.33712 5.36187 5.40294 5.53242 5.55935 5.63029 5.67484 5.72283 5.76380 5.83165 5.87336 5.91252 5.95685 6.08316 6.17908 6.36202 6.47331 6.62805 6.70507 6.75470 6.86779 6.94221 7.39886 7.76637 7.81804 7.82064 7.89987 8.39031 8.48029 9.22697 9.84271 10.33861 11.31888 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.024520 B = 0.002231 C = 0.002166 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.648363 B =12547.003412 C =12921.659617 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.114 4.114 3 C -0.153 4.153 4 C 0.093 3.907 5 N -0.491 5.491 6 C 0.146 3.854 7 C -0.234 4.234 8 C 0.018 3.982 9 C -0.241 4.241 10 C 0.596 3.404 11 O -0.533 6.533 12 N -0.606 5.606 13 C 0.109 3.891 14 C -0.153 4.153 15 C 0.174 3.826 16 H 0.078 0.922 17 N -0.585 5.585 18 C 0.159 3.841 19 C -0.260 4.260 20 H 0.070 0.930 21 C 0.004 3.996 22 N -0.905 5.905 23 Si 0.908 3.092 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.087 3.913 28 C 0.532 3.468 29 O -0.529 6.529 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.081 0.919 34 H 0.058 0.942 35 H 0.056 0.944 36 H 0.061 0.939 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.163 0.837 40 H 0.151 0.849 41 H 0.140 0.860 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.076 0.924 45 H 0.078 0.922 46 H 0.032 0.968 47 H 0.044 0.956 48 H 0.002 0.998 49 H 0.254 0.746 50 H 0.068 0.932 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.249 26.284 8.630 30.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.134 4.134 3 C -0.210 4.210 4 C -0.028 4.028 5 N -0.200 5.200 6 C 0.017 3.983 7 C -0.257 4.257 8 C -0.005 4.005 9 C -0.249 4.249 10 C 0.382 3.618 11 O -0.409 6.409 12 N -0.339 5.339 13 C -0.015 4.015 14 C -0.193 4.193 15 C 0.063 3.937 16 H 0.096 0.904 17 N -0.305 5.305 18 C 0.015 3.985 19 C -0.389 4.389 20 H 0.088 0.912 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.738 3.262 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.037 4.037 28 C 0.332 3.668 29 O -0.409 6.409 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.077 0.923 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.121 0.879 38 H 0.111 0.889 39 H 0.180 0.820 40 H 0.168 0.832 41 H 0.158 0.842 42 H 0.079 0.921 43 H 0.075 0.925 44 H 0.094 0.906 45 H 0.097 0.903 46 H 0.051 0.949 47 H 0.063 0.937 48 H 0.020 0.980 49 H 0.064 0.936 50 H 0.087 0.913 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -13.751 25.461 7.531 29.901 hybrid contribution 0.840 -0.368 0.004 0.917 sum -12.911 25.094 7.536 29.209 Atomic orbital electron populations 1.21747 0.93593 1.02525 1.02239 1.21481 0.96867 0.96589 0.98420 1.21960 1.01223 0.95469 1.02383 1.22180 0.77186 1.04052 0.99367 1.45487 1.08915 1.18512 1.47103 1.22055 0.92516 0.91213 0.92538 1.20543 0.92924 1.02135 1.10126 1.21814 1.00673 0.90393 0.87606 1.20956 0.93075 1.00120 1.10728 1.17028 0.77738 0.81104 0.85894 1.90802 1.57898 1.78683 1.13567 1.48430 1.60094 1.18011 1.07369 1.21961 1.00000 0.99178 0.80348 1.23192 1.00501 0.95090 1.00517 1.21457 0.95473 0.86528 0.90221 0.90362 1.43854 1.04905 0.98086 1.83690 1.20847 0.86616 0.92183 0.98877 1.19226 0.84205 0.99693 1.35823 0.91201 1.25122 0.97357 0.98940 0.98029 1.70065 1.28990 1.14285 1.41544 0.86199 0.83534 0.79318 0.77116 1.21466 1.21693 1.20430 1.23172 0.97600 0.82906 1.00058 1.16708 0.88394 0.81610 0.80042 1.90973 1.63785 1.38837 1.47270 0.92367 0.91953 0.92032 0.90011 0.92329 0.92526 0.91975 0.87869 0.88878 0.82009 0.83159 0.84245 0.92078 0.92510 0.90569 0.90347 0.94943 0.93688 0.97962 0.93609 0.91349 0.90786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.19 37.16 0.34 -0.45 16 2 C -0.11 -0.80 3.12 -90.62 -0.28 -1.09 16 3 C -0.15 -0.79 8.63 37.16 0.32 -0.47 16 4 C 0.09 0.67 4.83 -4.04 -0.02 0.65 16 5 N -0.49 -4.61 2.46 -119.34 -0.29 -4.90 16 6 C 0.15 0.86 8.20 -16.85 -0.14 0.72 16 7 C -0.23 -1.49 9.99 -40.01 -0.40 -1.89 16 8 C 0.02 0.18 9.89 -38.72 -0.38 -0.21 16 9 C -0.24 -3.58 4.86 -104.50 -0.51 -4.09 16 10 C 0.60 11.50 6.84 -12.67 -0.09 11.41 16 11 O -0.53 -12.50 17.34 5.24 0.09 -12.41 16 12 N -0.61 -11.14 3.33 -171.91 -0.57 -11.71 16 13 C 0.11 1.60 6.46 -3.07 -0.02 1.58 16 14 C -0.15 -2.53 6.47 -24.90 -0.16 -2.69 16 15 C 0.17 3.58 3.54 -65.79 -0.23 3.34 16 16 H 0.08 1.59 7.95 -51.93 -0.41 1.18 16 17 N -0.59 -14.60 2.96 -171.03 -0.51 -15.11 16 18 C 0.16 3.95 7.79 59.85 0.47 4.41 16 19 C -0.26 -7.09 9.62 -15.06 -0.14 -7.23 16 20 H 0.07 1.84 7.83 -52.48 -0.41 1.43 16 21 C 0.00 0.12 5.17 -17.43 -0.09 0.03 16 22 N -0.90 -26.58 10.59 55.49 0.59 -26.00 16 23 Si 0.91 21.89 29.56 -169.99 -5.03 16.87 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 26 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 27 C 0.09 1.83 6.52 -2.53 -0.02 1.82 16 28 C 0.53 7.88 7.44 -14.92 -0.11 7.77 16 29 O -0.53 -10.11 16.11 5.02 0.08 -10.03 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.84 8.14 -51.92 -0.42 0.42 16 34 H 0.06 0.19 8.14 -51.93 -0.42 -0.23 16 35 H 0.06 0.32 6.34 -51.93 -0.33 -0.01 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 37 H 0.10 0.94 7.39 -51.93 -0.38 0.56 16 38 H 0.09 0.35 8.00 -51.93 -0.42 -0.07 16 39 H 0.16 0.28 7.87 -52.49 -0.41 -0.13 16 40 H 0.15 0.47 8.06 -52.48 -0.42 0.05 16 41 H 0.14 1.21 8.06 -52.48 -0.42 0.78 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 43 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 44 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 45 H 0.08 1.36 6.07 -51.93 -0.32 1.05 16 46 H 0.03 0.89 7.34 -51.93 -0.38 0.50 16 47 H 0.04 1.19 7.31 -51.93 -0.38 0.81 16 48 H 0.00 0.04 6.06 -51.93 -0.31 -0.27 16 49 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 50 H 0.07 1.58 7.26 -51.93 -0.38 1.20 16 51 H 0.07 1.68 7.99 -51.93 -0.41 1.27 16 LS Contribution 407.36 15.07 6.14 6.14 Total: -1.00 -37.17 407.36 -9.30 -46.47 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -8.33 Total: -2.94 kcal Atomic # 6 Polarization: 15.10 SS G_CDS: -1.47 Total: 13.63 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.78 Total: -57.72 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: 0.17 Total: -22.44 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.03 Total: 16.87 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -37.17 -9.30 -46.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000972488879.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.136 kcal (2) G-P(sol) polarization free energy of solvation -37.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.968 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.466 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds