Wall clock time and date at job start Wed Apr 1 2020 05:29:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47368 * 2 1 4 4 C 1.53007 * 109.47251 * 119.99659 * 2 1 3 5 5 N 1.46503 * 109.46584 * 65.00083 * 4 2 1 6 6 C 1.35441 * 119.46992 * 90.00091 * 5 4 2 7 7 C 1.35757 * 121.22638 * 180.26999 * 6 5 4 8 8 C 1.39471 * 120.13031 * 359.45740 * 7 6 5 9 9 C 1.39329 * 118.96133 * 0.55219 * 8 7 6 10 10 C 1.47091 * 120.59019 * 179.73961 * 9 8 7 11 11 O 1.21646 * 119.99501 * 255.14495 * 10 9 8 12 12 N 1.34773 * 119.99789 * 75.13936 * 10 9 8 13 13 C 1.46923 * 120.63565 * 4.89797 * 12 10 9 14 14 C 1.53617 * 108.54568 * 126.36942 * 13 12 10 15 15 C 1.53041 * 109.24017 * 54.85444 * 14 13 12 16 16 N 1.46499 * 109.45747 * 178.48969 * 15 14 13 17 17 C 1.36938 * 120.00319 * 275.07178 * 16 15 14 18 18 H 1.07997 * 119.99721 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00058 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99859 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00067 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47143 * 60.00445 * 21 19 17 23 23 H 1.48503 * 109.47386 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47395 * 300.00233 * 21 19 17 25 25 C 1.53035 * 109.54105 * 298.51480 * 15 14 13 26 26 C 1.46930 * 120.62689 * 185.18197 * 12 10 9 27 27 C 1.34648 * 119.47093 * 270.01797 * 5 4 2 28 28 O 1.21888 * 120.10241 * 359.97438 * 27 5 4 29 29 H 1.08999 * 109.46988 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46657 * 300.00238 * 1 2 3 31 31 H 1.08993 * 109.47165 * 59.99851 * 1 2 3 32 32 H 1.08997 * 109.47472 * 239.99943 * 2 1 3 33 33 H 1.09001 * 109.47478 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47000 * 300.00229 * 3 2 1 35 35 H 1.09005 * 109.47170 * 59.99495 * 3 2 1 36 36 H 1.08995 * 109.46947 * 305.00246 * 4 2 1 37 37 H 1.09001 * 109.47149 * 185.00070 * 4 2 1 38 38 H 1.07998 * 119.38443 * 0.02562 * 6 5 4 39 39 H 1.07999 * 119.92946 * 179.69883 * 7 6 5 40 40 H 1.08007 * 120.51837 * 180.26933 * 8 7 6 41 41 H 1.08998 * 109.58704 * 246.20337 * 13 12 10 42 42 H 1.09002 * 109.58388 * 6.62503 * 13 12 10 43 43 H 1.09003 * 109.63341 * 294.86749 * 14 13 12 44 44 H 1.09001 * 109.43574 * 174.73039 * 14 13 12 45 45 H 1.08997 * 109.45608 * 58.53829 * 15 14 13 46 46 H 0.97004 * 119.99744 * 95.07758 * 16 15 14 47 47 H 0.97005 * 119.99672 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.49891 * 301.41221 * 25 15 14 49 49 H 1.09000 * 109.52412 * 181.33243 * 25 15 14 50 50 H 1.09003 * 109.58665 * 353.37177 * 26 12 10 51 51 H 1.08997 * 109.59085 * 113.65452 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 2.4837 -3.0283 0.6063 7 6 2.1578 -4.3438 0.5274 8 6 0.9536 -4.8001 1.0629 9 6 0.0931 -3.8845 1.6651 10 6 -1.1885 -4.3256 2.2363 11 8 -2.2283 -4.0921 1.6497 12 7 -1.2108 -4.9886 3.4095 13 6 0.0234 -5.1847 4.1822 14 6 -0.2067 -4.6670 5.6101 15 6 -1.4365 -5.3570 6.2047 16 7 -1.6391 -4.8934 7.5796 17 6 -0.9655 -5.4922 8.6105 18 1 -0.2851 -6.3066 8.4100 19 6 -1.1580 -5.0532 9.9132 20 7 -1.9884 -4.0617 10.1576 21 14 -0.2396 -5.8705 11.3195 22 1 1.2229 -5.7273 11.1052 23 1 -0.6183 -5.2226 12.6010 24 1 -0.5936 -7.3118 11.3707 25 6 -2.6700 -5.0175 5.3650 26 6 -2.4688 -5.5344 3.9371 27 6 0.4753 -2.5191 1.7181 28 8 -0.2593 -1.6984 2.2401 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6054 -0.2617 2.1370 37 1 3.1264 -0.6443 1.2952 38 1 3.4215 -2.6888 0.1919 39 1 2.8343 -5.0390 0.0525 40 1 0.6900 -5.8460 1.0074 41 1 0.2719 -6.2456 4.2109 42 1 0.8377 -4.6290 3.7173 43 1 -0.3697 -3.5894 5.5871 44 1 0.6673 -4.8901 6.2220 45 1 -1.2828 -6.4361 6.2046 46 1 -2.2507 -4.1622 7.7596 47 1 -2.1226 -3.7547 11.0680 48 1 -2.8099 -3.9367 5.3444 49 1 -3.5496 -5.4899 5.8024 50 1 -3.2994 -5.2095 3.3104 51 1 -2.4204 -6.6233 3.9439 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000997069243.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:36 Heat of formation + Delta-G solvation = -27.736883 kcal Electronic energy + Delta-G solvation = -31557.966259 eV Core-core repulsion = 27457.916718 eV Total energy + Delta-G solvation = -4100.049542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.82908 -39.72959 -37.35232 -37.06916 -36.58703 -34.41191 -33.71574 -31.97686 -30.93343 -30.09030 -29.06838 -27.49810 -27.35880 -25.58566 -24.31546 -23.03885 -22.89888 -22.44827 -20.90623 -20.31581 -19.18267 -17.91389 -17.63907 -17.15441 -16.96739 -16.38232 -16.11079 -15.68985 -15.14034 -14.81850 -14.74920 -14.62984 -13.96568 -13.83654 -13.69364 -13.49208 -13.35972 -13.27412 -13.00495 -12.81330 -12.64064 -12.55628 -12.41037 -12.34481 -12.21659 -11.85709 -11.49979 -11.44373 -11.28821 -11.16266 -10.90945 -10.82527 -10.77237 -10.40886 -10.31639 -10.23014 -10.10867 -9.77613 -9.68732 -9.61813 -8.87477 -8.40040 -8.16866 -6.93958 -5.74036 -3.03182 0.33975 1.62254 2.16191 2.81904 3.12217 3.43629 3.44266 3.48425 3.49978 4.12503 4.19849 4.36158 4.51274 4.54182 4.58479 4.60885 4.77123 4.83820 4.99523 5.09057 5.17523 5.25410 5.36082 5.39247 5.41496 5.47403 5.50634 5.57449 5.58119 5.61214 5.66289 5.70455 5.72938 5.77278 5.83792 5.90585 6.01379 6.09111 6.13478 6.20303 6.29747 6.45416 6.48117 6.58385 6.71391 6.75905 6.96599 7.11661 7.59011 7.70095 7.83787 8.32839 8.44180 9.54971 10.13656 10.48512 11.48529 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013261 B = 0.002627 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.994908 B =10655.151414 C =11286.130025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.145 4.145 4 C 0.090 3.910 5 N -0.491 5.491 6 C 0.149 3.851 7 C -0.237 4.237 8 C 0.018 3.982 9 C -0.246 4.246 10 C 0.587 3.413 11 O -0.536 6.536 12 N -0.598 5.598 13 C 0.112 3.888 14 C -0.150 4.150 15 C 0.180 3.820 16 N -0.724 5.724 17 C -0.239 4.239 18 H 0.070 0.930 19 C -0.014 4.014 20 N -0.932 5.932 21 Si 0.907 3.093 22 H -0.287 1.287 23 H -0.291 1.291 24 H -0.286 1.286 25 C -0.139 4.139 26 C 0.117 3.883 27 C 0.532 3.468 28 O -0.520 6.520 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.072 0.928 33 H 0.057 0.943 34 H 0.061 0.939 35 H 0.061 0.939 36 H 0.105 0.895 37 H 0.093 0.907 38 H 0.163 0.837 39 H 0.151 0.849 40 H 0.139 0.861 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.060 0.940 44 H 0.073 0.927 45 H 0.048 0.952 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.064 0.936 49 H 0.076 0.924 50 H 0.088 0.912 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.516 2.774 -25.559 29.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.203 4.203 4 C -0.031 4.031 5 N -0.200 5.200 6 C 0.019 3.981 7 C -0.260 4.260 8 C -0.005 4.005 9 C -0.254 4.254 10 C 0.373 3.627 11 O -0.413 6.413 12 N -0.331 5.331 13 C -0.011 4.011 14 C -0.191 4.191 15 C 0.070 3.930 16 N -0.364 5.364 17 C -0.370 4.370 18 H 0.087 0.913 19 C -0.210 4.210 20 N -0.581 5.581 21 Si 0.738 3.262 22 H -0.213 1.213 23 H -0.217 1.217 24 H -0.213 1.213 25 C -0.178 4.178 26 C -0.005 4.005 27 C 0.332 3.668 28 O -0.399 6.399 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.071 0.929 32 H 0.091 0.909 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.080 0.920 36 H 0.123 0.877 37 H 0.111 0.889 38 H 0.181 0.819 39 H 0.168 0.832 40 H 0.157 0.843 41 H 0.085 0.915 42 H 0.089 0.911 43 H 0.079 0.921 44 H 0.092 0.908 45 H 0.066 0.934 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.083 0.917 49 H 0.095 0.905 50 H 0.107 0.893 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 12.534 3.394 -25.334 28.467 hybrid contribution 0.606 -0.242 0.911 1.120 sum 13.139 3.152 -24.423 27.911 Atomic orbital electron populations 1.21877 0.93632 1.02651 1.02130 1.21497 0.97655 0.96722 0.96865 1.21777 1.00806 0.94908 1.02771 1.22246 1.00923 0.78527 1.01376 1.45523 1.17732 1.09820 1.46936 1.22088 0.94641 0.90060 0.91270 1.20526 1.00018 0.94799 1.10656 1.21802 0.90595 0.99509 0.88570 1.20912 0.99159 0.93708 1.11595 1.17449 0.87560 0.77061 0.80606 1.90774 1.33540 1.55807 1.61204 1.48081 1.09995 1.54977 1.20017 1.21886 0.85515 1.00678 0.93041 1.22736 1.02017 1.01353 0.92973 1.20152 0.91029 0.96388 0.85416 1.42440 1.52513 1.41501 0.99978 1.19185 1.18913 1.12539 0.86376 0.91252 1.24755 1.00045 0.98834 0.97379 1.69664 1.39389 1.29320 1.19678 0.86281 0.79282 0.78645 0.82032 1.21334 1.21738 1.21293 1.22197 0.99972 1.01916 0.93723 1.21633 0.86049 0.97552 0.95285 1.16663 0.80770 0.89006 0.80393 1.90992 1.50133 1.53751 1.45056 0.92596 0.91576 0.92897 0.90910 0.92427 0.91955 0.91998 0.87695 0.88855 0.81932 0.83175 0.84345 0.91488 0.91056 0.92125 0.90826 0.93438 0.78231 0.93466 0.91703 0.90524 0.89330 0.91455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 7.92 37.16 0.29 -1.24 16 2 C -0.11 -0.77 3.13 -90.62 -0.28 -1.06 16 3 C -0.14 -0.80 9.19 37.16 0.34 -0.46 16 4 C 0.09 0.68 4.92 -4.04 -0.02 0.66 16 5 N -0.49 -4.60 2.47 -119.34 -0.29 -4.89 16 6 C 0.15 0.86 10.25 -16.85 -0.17 0.69 16 7 C -0.24 -1.43 9.99 -40.01 -0.40 -1.83 16 8 C 0.02 0.16 9.47 -38.72 -0.37 -0.20 16 9 C -0.25 -3.40 3.83 -104.50 -0.40 -3.80 16 10 C 0.59 10.02 6.69 -12.67 -0.08 9.94 16 11 O -0.54 -11.01 16.52 5.24 0.09 -10.92 16 12 N -0.60 -9.49 2.97 -173.90 -0.52 -10.01 16 13 C 0.11 1.62 6.25 -3.49 -0.02 1.60 16 14 C -0.15 -2.73 5.67 -26.39 -0.15 -2.88 16 15 C 0.18 3.63 2.73 -67.89 -0.19 3.44 16 16 N -0.72 -18.44 5.12 -53.39 -0.27 -18.71 16 17 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 18 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 19 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -28.58 13.06 55.49 0.72 -27.86 16 21 Si 0.91 22.43 29.55 -169.99 -5.02 17.40 16 22 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 25 C -0.14 -2.50 5.55 -26.62 -0.15 -2.65 16 26 C 0.12 1.84 6.44 -3.71 -0.02 1.82 16 27 C 0.53 7.57 6.00 -14.92 -0.09 7.48 16 28 O -0.52 -9.51 14.27 5.02 0.07 -9.44 16 29 H 0.05 0.75 6.05 -51.93 -0.31 0.43 16 30 H 0.07 0.80 7.96 -51.93 -0.41 0.39 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 34 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 35 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.10 1.03 7.38 -51.93 -0.38 0.64 16 37 H 0.09 0.38 8.00 -51.93 -0.42 -0.03 16 38 H 0.16 0.25 8.02 -52.49 -0.42 -0.17 16 39 H 0.15 0.43 8.06 -52.49 -0.42 0.01 16 40 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 41 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 42 H 0.07 0.95 6.14 -51.93 -0.32 0.63 16 43 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 44 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 45 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 46 H 0.38 10.58 7.80 -40.82 -0.32 10.26 16 47 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 48 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 49 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 50 H 0.09 1.45 6.99 -51.93 -0.36 1.08 16 51 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 LS Contribution 406.98 15.07 6.13 6.13 Total: -1.00 -37.29 406.98 -9.45 -46.74 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -8.41 Total: 7.33 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: -1.95 Total: 4.22 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.36 Total: -61.47 kcal Atomic # 8 Polarization: -20.52 SS G_CDS: 0.16 Total: -20.36 kcal Atomic # 14 Polarization: 22.43 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -37.29 -9.45 -46.74 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997069243.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.007 kcal (2) G-P(sol) polarization free energy of solvation -37.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds