Wall clock time and date at job start Wed Apr 1 2020 05:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47368 * 2 1 4 4 C 1.53007 * 109.47251 * 119.99659 * 2 1 3 5 5 N 1.46503 * 109.46584 * 65.00083 * 4 2 1 6 6 C 1.35441 * 119.46992 * 90.00091 * 5 4 2 7 7 C 1.35757 * 121.22638 * 180.26999 * 6 5 4 8 8 C 1.39471 * 120.13031 * 359.45740 * 7 6 5 9 9 C 1.39329 * 118.96133 * 0.55219 * 8 7 6 10 10 C 1.47091 * 120.59019 * 179.73961 * 9 8 7 11 11 O 1.21646 * 119.99501 * 255.14495 * 10 9 8 12 12 N 1.34773 * 119.99789 * 75.13936 * 10 9 8 13 13 C 1.46923 * 120.63565 * 4.89797 * 12 10 9 14 14 C 1.53617 * 108.54568 * 126.36942 * 13 12 10 15 15 C 1.53041 * 109.24017 * 54.85444 * 14 13 12 16 16 N 1.46499 * 109.45747 * 178.48969 * 15 14 13 17 17 C 1.36938 * 120.00319 * 275.07178 * 16 15 14 18 18 H 1.07997 * 119.99721 * 359.97438 * 17 16 15 19 19 C 1.38812 * 120.00058 * 180.02562 * 17 16 15 20 20 N 1.31624 * 119.99859 * 0.02562 * 19 17 16 21 21 Si 1.86794 * 120.00067 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.47143 * 60.00445 * 21 19 17 23 23 H 1.48503 * 109.47386 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47395 * 300.00233 * 21 19 17 25 25 C 1.53035 * 109.54105 * 298.51480 * 15 14 13 26 26 C 1.46930 * 120.62689 * 185.18197 * 12 10 9 27 27 C 1.34648 * 119.47093 * 270.01797 * 5 4 2 28 28 O 1.21888 * 120.10241 * 359.97438 * 27 5 4 29 29 H 1.08999 * 109.46988 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46657 * 300.00238 * 1 2 3 31 31 H 1.08993 * 109.47165 * 59.99851 * 1 2 3 32 32 H 1.08997 * 109.47472 * 239.99943 * 2 1 3 33 33 H 1.09001 * 109.47478 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47000 * 300.00229 * 3 2 1 35 35 H 1.09005 * 109.47170 * 59.99495 * 3 2 1 36 36 H 1.08995 * 109.46947 * 305.00246 * 4 2 1 37 37 H 1.09001 * 109.47149 * 185.00070 * 4 2 1 38 38 H 1.07998 * 119.38443 * 0.02562 * 6 5 4 39 39 H 1.07999 * 119.92946 * 179.69883 * 7 6 5 40 40 H 1.08007 * 120.51837 * 180.26933 * 8 7 6 41 41 H 1.08998 * 109.58704 * 246.20337 * 13 12 10 42 42 H 1.09002 * 109.58388 * 6.62503 * 13 12 10 43 43 H 1.09003 * 109.63341 * 294.86749 * 14 13 12 44 44 H 1.09001 * 109.43574 * 174.73039 * 14 13 12 45 45 H 1.08997 * 109.45608 * 58.53829 * 15 14 13 46 46 H 0.97004 * 119.99744 * 95.07758 * 16 15 14 47 47 H 0.97005 * 119.99672 * 180.02562 * 20 19 17 48 48 H 1.08999 * 109.49891 * 301.41221 * 25 15 14 49 49 H 1.09000 * 109.52412 * 181.33243 * 25 15 14 50 50 H 1.09003 * 109.58665 * 353.37177 * 26 12 10 51 51 H 1.08997 * 109.59085 * 113.65452 * 26 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.6524 -2.1328 1.1906 6 6 2.4837 -3.0283 0.6063 7 6 2.1578 -4.3438 0.5274 8 6 0.9536 -4.8001 1.0629 9 6 0.0931 -3.8845 1.6651 10 6 -1.1885 -4.3256 2.2363 11 8 -2.2283 -4.0921 1.6497 12 7 -1.2108 -4.9886 3.4095 13 6 0.0234 -5.1847 4.1822 14 6 -0.2067 -4.6670 5.6101 15 6 -1.4365 -5.3570 6.2047 16 7 -1.6391 -4.8934 7.5796 17 6 -0.9655 -5.4922 8.6105 18 1 -0.2851 -6.3066 8.4100 19 6 -1.1580 -5.0532 9.9132 20 7 -1.9884 -4.0617 10.1576 21 14 -0.2396 -5.8705 11.3195 22 1 1.2229 -5.7273 11.1052 23 1 -0.6183 -5.2226 12.6010 24 1 -0.5936 -7.3118 11.3707 25 6 -2.6700 -5.0175 5.3650 26 6 -2.4688 -5.5344 3.9371 27 6 0.4753 -2.5191 1.7181 28 8 -0.2593 -1.6984 2.2401 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4425 -0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6766 1.9564 0.8900 36 1 1.6054 -0.2617 2.1370 37 1 3.1264 -0.6443 1.2952 38 1 3.4215 -2.6888 0.1919 39 1 2.8343 -5.0390 0.0525 40 1 0.6900 -5.8460 1.0074 41 1 0.2719 -6.2456 4.2109 42 1 0.8377 -4.6290 3.7173 43 1 -0.3697 -3.5894 5.5871 44 1 0.6673 -4.8901 6.2220 45 1 -1.2828 -6.4361 6.2046 46 1 -2.2507 -4.1622 7.7596 47 1 -2.1226 -3.7547 11.0680 48 1 -2.8099 -3.9367 5.3444 49 1 -3.5496 -5.4899 5.8024 50 1 -3.2994 -5.2095 3.3104 51 1 -2.4204 -6.6233 3.9439 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000997069243.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:35 Heat of formation + Delta-G solvation = -53.423229 kcal Electronic energy + Delta-G solvation = -31559.080103 eV Core-core repulsion = 27457.916718 eV Total energy + Delta-G solvation = -4101.163385 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.64357 -40.97521 -38.75171 -38.03493 -37.31117 -36.14790 -34.54682 -33.73891 -32.24125 -31.24195 -30.64107 -28.26349 -27.92905 -26.92758 -25.68461 -24.41755 -24.00375 -23.68920 -21.99700 -21.31239 -20.45705 -19.14316 -18.76758 -18.48534 -18.01657 -17.41339 -16.99163 -16.69794 -16.64363 -15.99840 -15.72487 -15.53231 -15.44464 -15.40156 -15.12669 -14.70020 -14.58311 -14.46311 -14.05030 -13.79599 -13.54740 -13.40201 -13.38076 -13.25365 -13.16445 -13.05677 -12.92974 -12.79834 -12.66069 -12.28155 -12.22366 -12.09476 -12.03863 -11.97486 -11.77475 -11.71719 -11.37336 -11.29599 -10.96299 -10.95208 -10.76420 -9.72950 -9.04830 -8.94144 -7.93125 -5.23321 -0.34660 0.91297 1.26112 1.47086 1.51079 1.56988 1.79169 2.04080 2.56437 2.58619 3.39003 3.46764 3.60842 3.73414 3.78576 3.81125 3.85797 3.89815 3.98491 4.03452 4.12534 4.15037 4.27556 4.31200 4.34413 4.45029 4.51216 4.57433 4.65110 4.71334 4.72442 4.77435 4.81209 4.83530 4.91935 4.97654 4.99574 5.00729 5.05584 5.10890 5.24432 5.25692 5.31266 5.38562 5.46142 5.51771 5.57343 5.62376 6.02001 6.27080 6.35106 6.97074 7.08624 7.32442 8.07164 8.31781 9.30787 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013261 B = 0.002627 C = 0.002480 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2110.994908 B =10655.151414 C =11286.130025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.099 4.099 3 C -0.141 4.141 4 C 0.086 3.914 5 N -0.486 5.486 6 C 0.167 3.833 7 C -0.234 4.234 8 C 0.049 3.951 9 C -0.312 4.312 10 C 0.584 3.416 11 O -0.588 6.588 12 N -0.600 5.600 13 C 0.124 3.876 14 C -0.139 4.139 15 C 0.177 3.823 16 N -0.740 5.740 17 C -0.236 4.236 18 H 0.084 0.916 19 C -0.083 4.083 20 N -0.976 5.976 21 Si 0.977 3.023 22 H -0.275 1.275 23 H -0.300 1.300 24 H -0.275 1.275 25 C -0.129 4.129 26 C 0.122 3.878 27 C 0.518 3.482 28 O -0.591 6.591 29 H 0.022 0.978 30 H 0.034 0.966 31 H 0.061 0.939 32 H 0.098 0.902 33 H 0.085 0.915 34 H 0.065 0.935 35 H 0.045 0.955 36 H 0.070 0.930 37 H 0.145 0.855 38 H 0.224 0.776 39 H 0.199 0.801 40 H 0.159 0.841 41 H 0.103 0.897 42 H 0.087 0.913 43 H 0.025 0.975 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.367 0.633 47 H 0.249 0.751 48 H 0.034 0.966 49 H 0.078 0.922 50 H 0.077 0.923 51 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.703 0.425 -28.274 33.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.118 4.118 3 C -0.198 4.198 4 C -0.035 4.035 5 N -0.193 5.193 6 C 0.038 3.962 7 C -0.256 4.256 8 C 0.026 3.974 9 C -0.319 4.319 10 C 0.373 3.627 11 O -0.469 6.469 12 N -0.332 5.332 13 C 0.002 3.998 14 C -0.180 4.180 15 C 0.069 3.931 16 N -0.379 5.379 17 C -0.368 4.368 18 H 0.102 0.898 19 C -0.274 4.274 20 N -0.627 5.627 21 Si 0.805 3.195 22 H -0.201 1.201 23 H -0.227 1.227 24 H -0.201 1.201 25 C -0.168 4.168 26 C -0.001 4.001 27 C 0.321 3.679 28 O -0.476 6.476 29 H 0.041 0.959 30 H 0.053 0.947 31 H 0.080 0.920 32 H 0.116 0.884 33 H 0.104 0.896 34 H 0.084 0.916 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.162 0.838 38 H 0.240 0.760 39 H 0.216 0.784 40 H 0.176 0.824 41 H 0.121 0.879 42 H 0.105 0.895 43 H 0.043 0.957 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.198 0.802 47 H 0.058 0.942 48 H 0.053 0.947 49 H 0.096 0.904 50 H 0.095 0.905 51 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 17.799 0.996 -28.108 33.284 hybrid contribution -0.911 0.492 1.592 1.899 sum 16.888 1.488 -26.515 31.472 Atomic orbital electron populations 1.21824 0.97066 1.00102 1.00984 1.21478 0.94480 0.98235 0.97642 1.21754 1.02480 0.93388 1.02228 1.22467 1.03451 0.77410 1.00133 1.45582 1.16645 1.11304 1.45776 1.23193 0.95231 0.89578 0.88179 1.21119 0.99043 0.95759 1.09637 1.22227 0.90350 0.99693 0.85117 1.20565 0.99684 0.94597 1.17029 1.18085 0.88496 0.75787 0.80356 1.90716 1.35929 1.57499 1.62738 1.48192 1.10266 1.54738 1.19986 1.21881 0.85368 1.02662 0.89909 1.22522 1.00683 0.99036 0.95772 1.20388 0.92445 0.96993 0.83272 1.42706 1.52154 1.41068 1.01938 1.19648 1.18091 1.12079 0.86940 0.89834 1.25656 1.01594 0.99944 1.00231 1.69857 1.41721 1.31468 1.19635 0.85160 0.78332 0.77843 0.78123 1.20087 1.22701 1.20051 1.22065 0.99348 1.00060 0.95335 1.21582 0.86282 0.99206 0.92983 1.16856 0.81754 0.88839 0.80406 1.90945 1.52619 1.55293 1.48731 0.95861 0.94672 0.91992 0.88379 0.89578 0.91630 0.93536 0.91139 0.83753 0.75950 0.78433 0.82370 0.87946 0.89481 0.95650 0.91139 0.92000 0.80192 0.94210 0.94746 0.90393 0.90475 0.88157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.25 7.92 71.98 0.57 -2.68 16 2 C -0.10 -1.24 3.13 -10.79 -0.03 -1.28 16 3 C -0.14 -1.26 9.19 71.98 0.66 -0.60 16 4 C 0.09 1.12 4.92 86.38 0.43 1.55 16 5 N -0.49 -8.08 2.47 -649.68 -1.60 -9.68 16 6 C 0.17 0.97 10.25 83.56 0.86 1.83 16 7 C -0.23 -1.42 9.99 21.99 0.22 -1.20 16 8 C 0.05 0.74 9.47 22.83 0.22 0.96 16 9 C -0.31 -8.59 3.83 -19.79 -0.08 -8.67 16 10 C 0.58 20.88 6.69 86.57 0.58 21.46 16 11 O -0.59 -26.06 16.52 -4.18 -0.07 -26.13 16 12 N -0.60 -19.33 2.97 -822.33 -2.44 -21.77 16 13 C 0.12 3.44 6.25 86.51 0.54 3.98 16 14 C -0.14 -5.17 5.67 30.82 0.17 -5.00 16 15 C 0.18 7.24 2.73 45.02 0.12 7.36 16 16 N -0.74 -38.93 5.12 -322.83 -1.65 -40.58 16 17 C -0.24 -13.17 9.93 84.03 0.83 -12.34 16 18 H 0.08 4.34 7.83 -2.91 -0.02 4.31 16 19 C -0.08 -4.83 5.50 84.86 0.47 -4.37 16 20 N -0.98 -61.96 13.06 21.65 0.28 -61.67 16 21 Si 0.98 46.47 29.55 68.60 2.03 48.50 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 23 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 25 C -0.13 -4.89 5.55 30.67 0.17 -4.72 16 26 C 0.12 3.91 6.44 86.36 0.56 4.47 16 27 C 0.52 15.30 6.00 85.17 0.51 15.81 16 28 O -0.59 -24.06 14.27 -4.95 -0.07 -24.13 16 29 H 0.02 0.67 6.05 -2.39 -0.01 0.65 16 30 H 0.03 0.98 7.96 -2.38 -0.02 0.96 16 31 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 33 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 34 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.07 1.47 7.38 -2.39 -0.02 1.45 16 37 H 0.14 0.42 8.00 -2.39 -0.02 0.40 16 38 H 0.22 -1.33 8.02 -2.91 -0.02 -1.35 16 39 H 0.20 -0.54 8.06 -2.91 -0.02 -0.56 16 40 H 0.16 1.69 8.06 -2.91 -0.02 1.67 16 41 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 42 H 0.09 2.19 6.14 -2.39 -0.01 2.18 16 43 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 45 H 0.06 2.38 8.08 -2.39 -0.02 2.36 16 46 H 0.37 21.44 7.80 -92.71 -0.72 20.72 16 47 H 0.25 15.39 8.31 -92.70 -0.77 14.62 16 48 H 0.03 1.48 8.14 -2.39 -0.02 1.46 16 49 H 0.08 2.89 8.14 -2.39 -0.02 2.87 16 50 H 0.08 2.68 6.99 -2.39 -0.02 2.66 16 51 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -93.56 406.98 3.47 -90.09 By element: Atomic # 1 Polarization: 28.59 SS G_CDS: 0.20 Total: 28.79 kcal Atomic # 6 Polarization: 9.78 SS G_CDS: 6.80 Total: 16.58 kcal Atomic # 7 Polarization: -128.29 SS G_CDS: -5.41 Total: -133.70 kcal Atomic # 8 Polarization: -50.12 SS G_CDS: -0.14 Total: -50.26 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -93.56 3.47 -90.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000997069243.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.671 kcal (2) G-P(sol) polarization free energy of solvation -93.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.094 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds