Wall clock time and date at job start Wed Apr 1 2020 05:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34782 * 120.00046 * 2 1 4 4 O 1.21643 * 119.99948 * 184.81764 * 3 2 1 5 5 C 1.47083 * 119.99772 * 4.81289 * 3 2 1 6 6 C 1.39340 * 120.58697 * 82.36731 * 5 3 2 7 7 C 1.39464 * 118.95887 * 179.97438 * 6 5 3 8 8 C 1.35757 * 120.13168 * 359.97438 * 7 6 5 9 9 N 1.35427 * 121.23053 * 0.02562 * 8 7 6 10 10 C 1.46502 * 119.47130 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.46899 * 0.02562 * 10 9 8 12 12 C 1.53001 * 109.47134 * 119.99916 * 10 9 8 13 13 C 1.52996 * 109.47514 * 240.00117 * 10 9 8 14 14 C 1.34658 * 121.05912 * 359.72494 * 9 8 7 15 15 O 1.21886 * 120.10496 * 180.28487 * 14 9 8 16 16 C 1.46502 * 120.00208 * 179.97438 * 2 1 3 17 17 C 1.53782 * 113.68644 * 17.91103 * 16 2 1 18 18 C 1.53782 * 87.08095 * 89.12664 * 17 16 2 19 19 N 1.46500 * 113.61493 * 270.88200 * 18 17 16 20 20 C 1.36931 * 119.99764 * 257.23106 * 19 18 17 21 21 H 1.08003 * 120.00043 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99962 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00055 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00343 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46843 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47546 * 119.99602 * 24 22 20 27 27 H 1.48502 * 109.47421 * 239.99749 * 24 22 20 28 28 C 1.53781 * 113.61442 * 115.44701 * 16 2 1 29 29 H 1.08998 * 109.47518 * 264.28181 * 1 2 3 30 30 H 1.09000 * 109.47112 * 24.28379 * 1 2 3 31 31 H 1.09003 * 109.46902 * 144.28388 * 1 2 3 32 32 H 1.08002 * 120.51619 * 359.97438 * 6 5 3 33 33 H 1.08000 * 119.93319 * 180.02562 * 7 6 5 34 34 H 1.08003 * 119.38099 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.47187 * 60.00248 * 11 10 9 36 36 H 1.09001 * 109.46714 * 179.97438 * 11 10 9 37 37 H 1.08995 * 109.47237 * 299.99493 * 11 10 9 38 38 H 1.09001 * 109.47081 * 59.99943 * 12 10 9 39 39 H 1.08998 * 109.47290 * 180.02562 * 12 10 9 40 40 H 1.09008 * 109.46797 * 300.00335 * 12 10 9 41 41 H 1.08999 * 109.47279 * 59.99568 * 13 10 9 42 42 H 1.09001 * 109.47370 * 180.02562 * 13 10 9 43 43 H 1.09009 * 109.46963 * 299.99847 * 13 10 9 44 44 H 1.08994 * 112.85195 * 246.64418 * 16 2 1 45 45 H 1.09003 * 113.61460 * 203.67304 * 17 16 2 46 46 H 1.09000 * 113.61550 * 334.57882 * 17 16 2 47 47 H 1.09006 * 113.68793 * 139.98682 * 18 17 16 48 48 H 0.96998 * 119.99711 * 77.23269 * 19 18 17 49 49 H 0.96996 * 120.00376 * 180.02562 * 23 22 20 50 50 H 1.08995 * 113.61326 * 25.35113 * 28 16 2 51 51 H 1.08998 * 113.61308 * 156.25532 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3521 1.1691 -0.0885 5 6 1.4073 2.4388 0.1069 6 6 1.0033 2.9220 1.3498 7 6 0.3121 4.1317 1.4118 8 6 0.0418 4.8213 0.2740 9 7 0.4314 4.3577 -0.9373 10 6 0.1188 5.1330 -2.1404 11 6 -0.6400 6.4019 -1.7465 12 6 1.4180 5.5164 -2.8519 13 6 -0.7474 4.2909 -3.0792 14 6 1.1058 3.1979 -1.0533 15 8 1.4526 2.7995 -2.1517 16 6 2.1975 -1.2687 0.0006 17 6 1.3459 -2.4740 -0.4320 18 6 1.7798 -2.1630 -1.8742 19 7 0.8924 -1.2238 -2.5645 20 6 -0.0109 -1.6854 -3.4842 21 1 -0.0688 -2.7419 -3.7011 22 6 -0.8515 -0.7955 -4.1387 23 7 -0.7806 0.4921 -3.8747 24 14 -2.0842 -1.4252 -5.3929 25 1 -1.9649 -2.9010 -5.5063 26 1 -3.4589 -1.0713 -4.9568 27 1 -1.8084 -0.8038 -6.7132 28 6 3.0298 -1.5000 -1.2717 29 1 -0.3634 -0.1024 1.0225 30 1 -0.3633 0.9367 -0.4226 31 1 -0.3633 -0.8344 -0.5999 32 1 1.2220 2.3684 2.2509 33 1 -0.0081 4.5211 2.3669 34 1 -0.4939 5.7570 0.3361 35 1 -0.0225 7.0017 -1.0779 36 1 -0.8721 6.9789 -2.6416 37 1 -1.5655 6.1291 -1.2395 38 1 1.9590 4.6127 -3.1324 39 1 1.1855 6.0937 -3.7467 40 1 2.0351 6.1164 -2.1829 41 1 -1.6729 4.0177 -2.5724 42 1 -0.9795 4.8677 -3.9745 43 1 -0.2063 3.3871 -3.3598 44 1 2.7540 -1.4358 0.9227 45 1 1.7190 -3.4282 -0.0599 46 1 0.2783 -2.3391 -0.2585 47 1 1.9994 -3.0513 -2.4666 48 1 0.9447 -0.2750 -2.3699 49 1 -1.3682 1.1140 -4.3318 50 1 3.3215 -0.5789 -1.7760 51 1 3.8632 -2.1880 -1.1291 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000999522999.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:18 Heat of formation + Delta-G solvation = 27.718469 kcal Electronic energy + Delta-G solvation = -33611.485654 eV Core-core repulsion = 29513.840837 eV Total energy + Delta-G solvation = -4097.644817 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.55393 -39.85333 -37.67404 -36.64936 -36.20104 -33.95092 -33.01763 -31.88343 -30.00290 -29.64240 -27.82493 -27.14536 -26.63924 -25.05209 -24.54727 -23.90457 -23.36719 -22.25114 -20.64019 -19.45554 -17.95504 -17.34177 -17.30072 -16.86393 -16.43048 -15.99732 -15.56471 -15.38027 -14.99985 -14.64954 -14.29325 -14.04216 -13.91276 -13.72556 -13.44705 -13.20199 -12.84090 -12.61657 -12.59866 -12.35281 -12.15382 -12.05820 -11.93795 -11.90017 -11.81138 -11.57284 -11.31326 -11.16898 -11.16740 -11.02864 -10.97651 -10.82250 -10.65158 -10.12595 -9.97233 -9.87593 -9.65311 -9.51742 -9.37569 -9.08190 -8.76486 -7.95412 -7.66144 -6.83001 -5.63679 -2.94149 0.80273 2.09909 2.58524 3.21656 3.45248 3.52024 3.53145 3.53673 3.89761 4.46793 4.51437 4.64830 4.77726 4.88443 4.90911 5.00426 5.14866 5.25468 5.30782 5.35404 5.39466 5.47278 5.59681 5.62237 5.67480 5.70997 5.84488 5.85288 5.89743 5.98693 6.02926 6.07941 6.09570 6.12583 6.16639 6.27371 6.28757 6.39438 6.47023 6.53232 6.65611 6.77610 6.82118 6.88826 6.92995 7.05146 7.30108 7.33615 7.81179 7.96245 8.43429 8.51831 8.72685 9.63531 10.24111 10.61521 11.54757 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009144 B = 0.005465 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.474551 B = 5122.612762 C = 7225.411704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.576 5.576 3 C 0.591 3.409 4 O -0.537 6.537 5 C -0.239 4.239 6 C 0.008 3.992 7 C -0.246 4.246 8 C 0.141 3.859 9 N -0.483 5.483 10 C 0.148 3.852 11 C -0.162 4.162 12 C -0.163 4.163 13 C -0.166 4.166 14 C 0.529 3.471 15 O -0.489 6.489 16 C 0.129 3.871 17 C -0.184 4.184 18 C 0.165 3.835 19 N -0.704 5.704 20 C -0.245 4.245 21 H 0.069 0.931 22 C -0.008 4.008 23 N -0.910 5.910 24 Si 0.899 3.101 25 H -0.282 1.282 26 H -0.294 1.294 27 H -0.294 1.294 28 C -0.163 4.163 29 H 0.038 0.962 30 H 0.069 0.931 31 H 0.103 0.897 32 H 0.132 0.868 33 H 0.144 0.856 34 H 0.163 0.837 35 H 0.064 0.936 36 H 0.080 0.920 37 H 0.067 0.933 38 H 0.089 0.911 39 H 0.070 0.930 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.064 0.936 43 H 0.109 0.891 44 H 0.069 0.931 45 H 0.079 0.921 46 H 0.078 0.922 47 H 0.058 0.942 48 H 0.394 0.606 49 H 0.250 0.750 50 H 0.076 0.924 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.204 11.385 12.276 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.308 5.308 3 C 0.377 3.623 4 O -0.415 6.415 5 C -0.247 4.247 6 C -0.014 4.014 7 C -0.270 4.270 8 C 0.011 3.989 9 N -0.193 5.193 10 C 0.065 3.935 11 C -0.219 4.219 12 C -0.221 4.221 13 C -0.223 4.223 14 C 0.327 3.673 15 O -0.365 6.365 16 C 0.026 3.974 17 C -0.225 4.225 18 C 0.052 3.948 19 N -0.344 5.344 20 C -0.377 4.377 21 H 0.087 0.913 22 C -0.205 4.205 23 N -0.557 5.557 24 Si 0.731 3.269 25 H -0.208 1.208 26 H -0.222 1.222 27 H -0.221 1.221 28 C -0.202 4.202 29 H 0.056 0.944 30 H 0.088 0.912 31 H 0.121 0.879 32 H 0.150 0.850 33 H 0.162 0.838 34 H 0.180 0.820 35 H 0.083 0.917 36 H 0.099 0.901 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.089 0.911 40 H 0.072 0.928 41 H 0.074 0.926 42 H 0.083 0.917 43 H 0.128 0.872 44 H 0.087 0.913 45 H 0.098 0.902 46 H 0.096 0.904 47 H 0.077 0.923 48 H 0.230 0.770 49 H 0.060 0.940 50 H 0.095 0.905 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -0.459 11.038 11.241 15.761 hybrid contribution -0.950 0.141 -0.402 1.041 sum -1.409 11.179 10.839 15.635 Atomic orbital electron populations 1.21928 0.78793 1.05559 1.00102 1.47358 1.07170 1.04489 1.71760 1.17416 0.86476 0.82593 0.75773 1.90747 1.13807 1.87233 1.49673 1.20940 1.10151 0.99648 0.93958 1.21635 0.89487 0.93849 0.96415 1.20386 1.10202 0.98463 0.97944 1.22146 0.93783 0.98394 0.84540 1.45752 1.45870 1.20523 1.07194 1.21002 0.96986 0.91106 0.84363 1.22293 1.00204 0.96194 1.03203 1.22226 0.96069 1.03630 1.00128 1.22268 0.99526 1.02634 0.97891 1.16641 0.80205 0.80253 0.90179 1.91037 1.51537 1.67316 1.26598 1.21743 0.94555 0.83610 0.97535 1.24236 1.00450 0.95490 1.02309 1.21141 0.89819 0.93409 0.90402 1.42372 1.40089 1.06084 1.45851 1.19265 1.10999 0.92645 1.14751 0.91350 1.24732 1.00069 0.95450 1.00228 1.69760 1.40630 1.00391 1.44879 0.86245 0.81256 0.77781 0.81629 1.20751 1.22171 1.22118 1.23706 0.97717 1.01903 0.96911 0.94361 0.91231 0.87902 0.85030 0.83796 0.82010 0.91669 0.90117 0.91385 0.89183 0.91120 0.92834 0.92566 0.91665 0.87249 0.91308 0.90239 0.90389 0.92346 0.76981 0.93967 0.90496 0.90078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.47 8.61 59.84 0.52 1.99 16 2 N -0.58 -11.28 2.13 -174.40 -0.37 -11.65 16 3 C 0.59 12.37 6.43 -12.67 -0.08 12.28 16 4 O -0.54 -12.78 15.97 5.24 0.08 -12.70 16 5 C -0.24 -4.34 3.78 -104.51 -0.40 -4.73 16 6 C 0.01 0.11 9.91 -38.72 -0.38 -0.27 16 7 C -0.25 -2.49 9.99 -40.01 -0.40 -2.89 16 8 C 0.14 1.48 9.58 -16.85 -0.16 1.31 16 9 N -0.48 -6.93 2.53 -105.39 -0.27 -7.20 16 10 C 0.15 1.92 1.02 -131.82 -0.13 1.79 16 11 C -0.16 -1.33 7.09 37.16 0.26 -1.07 16 12 C -0.16 -2.19 8.39 37.16 0.31 -1.88 16 13 C -0.17 -2.62 8.40 37.16 0.31 -2.31 16 14 C 0.53 10.14 6.70 -14.92 -0.10 10.04 16 15 O -0.49 -11.56 12.67 5.02 0.06 -11.50 16 16 C 0.13 2.40 4.15 -67.12 -0.28 2.12 16 17 C -0.18 -3.27 7.16 -25.92 -0.19 -3.46 16 18 C 0.16 3.54 4.55 -67.11 -0.31 3.24 16 19 N -0.70 -18.22 3.78 -52.63 -0.20 -18.42 16 20 C -0.25 -6.83 9.98 -15.06 -0.15 -6.98 16 21 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 22 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 23 N -0.91 -26.57 13.06 55.49 0.72 -25.85 16 24 Si 0.90 22.35 29.55 -169.99 -5.02 17.33 16 25 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.90 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 C -0.16 -3.29 7.11 -25.91 -0.18 -3.47 16 29 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.07 1.42 6.65 -51.93 -0.35 1.07 16 31 H 0.10 2.17 4.66 -51.93 -0.24 1.93 16 32 H 0.13 1.47 8.06 -52.49 -0.42 1.04 16 33 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 34 H 0.16 1.04 5.55 -52.48 -0.29 0.75 16 35 H 0.06 0.43 7.41 -51.93 -0.38 0.04 16 36 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.07 0.49 7.41 -51.93 -0.38 0.11 16 38 H 0.09 1.59 6.10 -51.93 -0.32 1.27 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.05 0.64 8.14 -51.92 -0.42 0.22 16 41 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 42 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 43 H 0.11 2.32 6.14 -51.92 -0.32 2.00 16 44 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 45 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 46 H 0.08 1.45 5.80 -51.93 -0.30 1.15 16 47 H 0.06 1.24 8.12 -51.93 -0.42 0.82 16 48 H 0.39 11.01 6.12 -40.82 -0.25 10.76 16 49 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 50 H 0.08 1.85 7.14 -51.93 -0.37 1.48 16 51 H 0.08 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 395.98 15.07 5.97 5.97 Total: -1.00 -35.24 395.98 -8.30 -43.54 By element: Atomic # 1 Polarization: 22.90 SS G_CDS: -7.82 Total: 15.08 kcal Atomic # 6 Polarization: 6.85 SS G_CDS: -1.45 Total: 5.40 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -0.11 Total: -63.12 kcal Atomic # 8 Polarization: -24.34 SS G_CDS: 0.15 Total: -24.20 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -35.24 -8.30 -43.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999522999.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.261 kcal (2) G-P(sol) polarization free energy of solvation -35.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.542 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds