Wall clock time and date at job start Wed Apr 1 2020 05:31:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.34782 * 120.00046 * 2 1 4 4 O 1.21643 * 119.99948 * 184.81764 * 3 2 1 5 5 C 1.47083 * 119.99772 * 4.81289 * 3 2 1 6 6 C 1.39340 * 120.58697 * 82.36731 * 5 3 2 7 7 C 1.39464 * 118.95887 * 179.97438 * 6 5 3 8 8 C 1.35757 * 120.13168 * 359.97438 * 7 6 5 9 9 N 1.35427 * 121.23053 * 0.02562 * 8 7 6 10 10 C 1.46502 * 119.47130 * 179.97438 * 9 8 7 11 11 C 1.53000 * 109.46899 * 0.02562 * 10 9 8 12 12 C 1.53001 * 109.47134 * 119.99916 * 10 9 8 13 13 C 1.52996 * 109.47514 * 240.00117 * 10 9 8 14 14 C 1.34658 * 121.05912 * 359.72494 * 9 8 7 15 15 O 1.21886 * 120.10496 * 180.28487 * 14 9 8 16 16 C 1.46502 * 120.00208 * 179.97438 * 2 1 3 17 17 C 1.53782 * 113.68644 * 17.91103 * 16 2 1 18 18 C 1.53782 * 87.08095 * 89.12664 * 17 16 2 19 19 N 1.46500 * 113.61493 * 270.88200 * 18 17 16 20 20 C 1.36931 * 119.99764 * 257.23106 * 19 18 17 21 21 H 1.08003 * 120.00043 * 359.97438 * 20 19 18 22 22 C 1.38812 * 119.99962 * 180.02562 * 20 19 18 23 23 N 1.31622 * 120.00055 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00343 * 180.02562 * 22 20 19 25 25 H 1.48504 * 109.46843 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47546 * 119.99602 * 24 22 20 27 27 H 1.48502 * 109.47421 * 239.99749 * 24 22 20 28 28 C 1.53781 * 113.61442 * 115.44701 * 16 2 1 29 29 H 1.08998 * 109.47518 * 264.28181 * 1 2 3 30 30 H 1.09000 * 109.47112 * 24.28379 * 1 2 3 31 31 H 1.09003 * 109.46902 * 144.28388 * 1 2 3 32 32 H 1.08002 * 120.51619 * 359.97438 * 6 5 3 33 33 H 1.08000 * 119.93319 * 180.02562 * 7 6 5 34 34 H 1.08003 * 119.38099 * 180.02562 * 8 7 6 35 35 H 1.09001 * 109.47187 * 60.00248 * 11 10 9 36 36 H 1.09001 * 109.46714 * 179.97438 * 11 10 9 37 37 H 1.08995 * 109.47237 * 299.99493 * 11 10 9 38 38 H 1.09001 * 109.47081 * 59.99943 * 12 10 9 39 39 H 1.08998 * 109.47290 * 180.02562 * 12 10 9 40 40 H 1.09008 * 109.46797 * 300.00335 * 12 10 9 41 41 H 1.08999 * 109.47279 * 59.99568 * 13 10 9 42 42 H 1.09001 * 109.47370 * 180.02562 * 13 10 9 43 43 H 1.09009 * 109.46963 * 299.99847 * 13 10 9 44 44 H 1.08994 * 112.85195 * 246.64418 * 16 2 1 45 45 H 1.09003 * 113.61460 * 203.67304 * 17 16 2 46 46 H 1.09000 * 113.61550 * 334.57882 * 17 16 2 47 47 H 1.09006 * 113.68793 * 139.98682 * 18 17 16 48 48 H 0.96998 * 119.99711 * 77.23269 * 19 18 17 49 49 H 0.96996 * 120.00376 * 180.02562 * 23 22 20 50 50 H 1.08995 * 113.61326 * 25.35113 * 28 16 2 51 51 H 1.08998 * 113.61308 * 156.25532 * 28 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 3.3521 1.1691 -0.0885 5 6 1.4073 2.4388 0.1069 6 6 1.0033 2.9220 1.3498 7 6 0.3121 4.1317 1.4118 8 6 0.0418 4.8213 0.2740 9 7 0.4314 4.3577 -0.9373 10 6 0.1188 5.1330 -2.1404 11 6 -0.6400 6.4019 -1.7465 12 6 1.4180 5.5164 -2.8519 13 6 -0.7474 4.2909 -3.0792 14 6 1.1058 3.1979 -1.0533 15 8 1.4526 2.7995 -2.1517 16 6 2.1975 -1.2687 0.0006 17 6 1.3459 -2.4740 -0.4320 18 6 1.7798 -2.1630 -1.8742 19 7 0.8924 -1.2238 -2.5645 20 6 -0.0109 -1.6854 -3.4842 21 1 -0.0688 -2.7419 -3.7011 22 6 -0.8515 -0.7955 -4.1387 23 7 -0.7806 0.4921 -3.8747 24 14 -2.0842 -1.4252 -5.3929 25 1 -1.9649 -2.9010 -5.5063 26 1 -3.4589 -1.0713 -4.9568 27 1 -1.8084 -0.8038 -6.7132 28 6 3.0298 -1.5000 -1.2717 29 1 -0.3634 -0.1024 1.0225 30 1 -0.3633 0.9367 -0.4226 31 1 -0.3633 -0.8344 -0.5999 32 1 1.2220 2.3684 2.2509 33 1 -0.0081 4.5211 2.3669 34 1 -0.4939 5.7570 0.3361 35 1 -0.0225 7.0017 -1.0779 36 1 -0.8721 6.9789 -2.6416 37 1 -1.5655 6.1291 -1.2395 38 1 1.9590 4.6127 -3.1324 39 1 1.1855 6.0937 -3.7467 40 1 2.0351 6.1164 -2.1829 41 1 -1.6729 4.0177 -2.5724 42 1 -0.9795 4.8677 -3.9745 43 1 -0.2063 3.3871 -3.3598 44 1 2.7540 -1.4358 0.9227 45 1 1.7190 -3.4282 -0.0599 46 1 0.2783 -2.3391 -0.2585 47 1 1.9994 -3.0513 -2.4666 48 1 0.9447 -0.2750 -2.3699 49 1 -1.3682 1.1140 -4.3318 50 1 3.3215 -0.5789 -1.7760 51 1 3.8632 -2.1880 -1.1291 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000999522999.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:17 Heat of formation + Delta-G solvation = 4.140811 kcal Electronic energy + Delta-G solvation = -33612.508058 eV Core-core repulsion = 29513.840837 eV Total energy + Delta-G solvation = -4098.667221 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.71465 -41.37820 -39.20632 -37.97418 -37.31719 -35.68341 -34.88749 -33.02342 -31.84615 -30.93738 -28.69863 -28.34424 -28.17795 -26.70287 -25.91163 -25.50460 -24.83433 -23.69284 -21.85785 -20.81975 -19.52499 -19.22413 -18.52158 -18.02625 -17.78946 -17.50940 -16.89441 -16.61198 -16.55342 -16.46815 -15.62541 -15.38472 -15.15564 -15.09458 -14.90930 -14.72713 -14.65045 -13.97771 -13.73638 -13.58624 -13.49105 -13.31221 -13.15248 -13.04644 -13.00868 -12.94158 -12.78460 -12.75673 -12.65418 -12.52524 -12.51840 -12.12625 -12.10096 -12.05700 -11.69355 -11.64677 -11.26281 -10.96938 -10.87657 -10.78165 -10.50238 -9.50024 -8.89937 -8.81033 -7.79239 -5.12105 -0.24980 1.04771 1.33712 1.43757 1.46131 1.54898 1.87665 2.15268 2.57551 2.70166 3.43862 3.46698 3.57817 3.73431 3.78750 3.83305 3.89335 3.95043 3.95520 4.01984 4.11291 4.24871 4.33444 4.38762 4.41346 4.59188 4.61249 4.62648 4.65797 4.74189 4.81441 4.85932 4.88597 4.89230 4.94103 5.04408 5.06098 5.09529 5.13850 5.17781 5.29295 5.32279 5.33546 5.45083 5.48370 5.57271 5.72753 5.78995 6.21390 6.35060 6.45104 7.17706 7.22566 7.41867 8.19577 8.45701 9.38114 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009144 B = 0.005465 C = 0.003874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3061.474551 B = 5122.612762 C = 7225.411704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.577 5.577 3 C 0.586 3.414 4 O -0.584 6.584 5 C -0.306 4.306 6 C 0.039 3.961 7 C -0.237 4.237 8 C 0.150 3.850 9 N -0.481 5.481 10 C 0.145 3.855 11 C -0.153 4.153 12 C -0.159 4.159 13 C -0.159 4.159 14 C 0.515 3.485 15 O -0.561 6.561 16 C 0.126 3.874 17 C -0.154 4.154 18 C 0.143 3.857 19 N -0.718 5.718 20 C -0.251 4.251 21 H 0.072 0.928 22 C -0.064 4.064 23 N -0.935 5.935 24 Si 0.964 3.036 25 H -0.270 1.270 26 H -0.291 1.291 27 H -0.303 1.303 28 C -0.159 4.159 29 H 0.079 0.921 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.156 0.844 33 H 0.199 0.801 34 H 0.218 0.782 35 H 0.094 0.906 36 H 0.095 0.905 37 H 0.086 0.914 38 H 0.035 0.965 39 H 0.089 0.911 40 H 0.069 0.931 41 H 0.052 0.948 42 H 0.081 0.919 43 H 0.047 0.953 44 H 0.095 0.905 45 H 0.121 0.879 46 H 0.073 0.927 47 H 0.060 0.940 48 H 0.380 0.620 49 H 0.244 0.756 50 H 0.026 0.974 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.317 13.018 15.783 20.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.308 5.308 3 C 0.375 3.625 4 O -0.465 6.465 5 C -0.313 4.313 6 C 0.017 3.983 7 C -0.259 4.259 8 C 0.020 3.980 9 N -0.190 5.190 10 C 0.063 3.937 11 C -0.210 4.210 12 C -0.216 4.216 13 C -0.217 4.217 14 C 0.316 3.684 15 O -0.444 6.444 16 C 0.022 3.978 17 C -0.195 4.195 18 C 0.032 3.968 19 N -0.358 5.358 20 C -0.383 4.383 21 H 0.090 0.910 22 C -0.259 4.259 23 N -0.583 5.583 24 Si 0.794 3.206 25 H -0.194 1.194 26 H -0.218 1.218 27 H -0.231 1.231 28 C -0.199 4.199 29 H 0.097 0.903 30 H 0.063 0.937 31 H 0.095 0.905 32 H 0.174 0.826 33 H 0.216 0.784 34 H 0.234 0.766 35 H 0.112 0.888 36 H 0.114 0.886 37 H 0.105 0.895 38 H 0.054 0.946 39 H 0.108 0.892 40 H 0.088 0.912 41 H 0.071 0.929 42 H 0.100 0.900 43 H 0.066 0.934 44 H 0.112 0.888 45 H 0.139 0.861 46 H 0.091 0.909 47 H 0.078 0.922 48 H 0.214 0.786 49 H 0.053 0.947 50 H 0.045 0.955 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.595 12.643 14.805 19.641 hybrid contribution -0.265 -0.311 -1.451 1.508 sum -2.861 12.332 13.354 18.401 Atomic orbital electron populations 1.21746 0.78385 1.03094 1.01632 1.47482 1.07446 1.04742 1.71114 1.17966 0.86168 0.83886 0.74519 1.90680 1.15861 1.88098 1.51876 1.20707 1.15100 0.99784 0.95710 1.22107 0.86669 0.94472 0.95102 1.21043 1.08191 0.96605 1.00086 1.23188 0.92091 0.99812 0.82878 1.45781 1.44593 1.19318 1.09288 1.21157 0.96490 0.92443 0.83637 1.22303 1.00543 0.93337 1.04843 1.22158 0.96412 1.01512 1.01566 1.22123 0.98981 1.01007 0.99585 1.16929 0.80345 0.81485 0.89603 1.91004 1.54970 1.69476 1.28927 1.21915 0.94468 0.83773 0.97595 1.24018 1.00188 0.96933 0.98329 1.21477 0.90175 0.92810 0.92339 1.42489 1.40737 1.06093 1.46475 1.19564 1.11082 0.92748 1.14896 0.90987 1.25501 1.02213 0.95741 1.02410 1.69974 1.41289 1.01280 1.45750 0.85221 0.78997 0.77675 0.78657 1.19424 1.21804 1.23117 1.23707 0.98420 1.00153 0.97584 0.90289 0.93674 0.90482 0.82646 0.78426 0.76588 0.88752 0.88649 0.89516 0.94572 0.89177 0.91181 0.92893 0.90034 0.93390 0.88757 0.86095 0.90872 0.92216 0.78591 0.94718 0.95542 0.86876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.61 8.61 127.77 1.10 4.71 16 2 N -0.58 -23.46 2.13 -823.91 -1.75 -25.21 16 3 C 0.59 26.06 6.43 86.56 0.56 26.62 16 4 O -0.58 -29.95 15.97 -4.17 -0.07 -30.02 16 5 C -0.31 -11.53 3.78 -19.79 -0.07 -11.61 16 6 C 0.04 0.96 9.91 22.83 0.23 1.18 16 7 C -0.24 -3.64 9.99 21.99 0.22 -3.42 16 8 C 0.15 2.49 9.58 83.56 0.80 3.29 16 9 N -0.48 -13.63 2.53 -605.55 -1.53 -15.16 16 10 C 0.14 3.70 1.02 3.60 0.00 3.70 16 11 C -0.15 -1.86 7.09 71.98 0.51 -1.35 16 12 C -0.16 -4.46 8.39 71.98 0.60 -3.86 16 13 C -0.16 -5.35 8.40 71.98 0.60 -4.75 16 14 C 0.52 21.16 6.70 85.16 0.57 21.73 16 15 O -0.56 -29.94 12.67 -4.94 -0.06 -30.01 16 16 C 0.13 4.69 4.15 45.52 0.19 4.88 16 17 C -0.15 -5.32 7.16 31.12 0.22 -5.10 16 18 C 0.14 6.30 4.55 45.52 0.21 6.51 16 19 N -0.72 -39.40 3.78 -320.43 -1.21 -40.61 16 20 C -0.25 -14.58 9.98 84.03 0.84 -13.75 16 21 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 22 C -0.06 -3.81 5.50 84.86 0.47 -3.34 16 23 N -0.93 -58.44 13.06 21.65 0.28 -58.15 16 24 Si 0.96 47.72 29.55 68.60 2.03 49.75 16 25 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 27 H -0.30 -15.35 7.11 99.48 0.71 -14.65 16 28 C -0.16 -6.70 7.11 31.12 0.22 -6.48 16 29 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 30 H 0.04 1.95 6.65 -2.39 -0.02 1.93 16 31 H 0.08 3.38 4.66 -2.39 -0.01 3.37 16 32 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 33 H 0.20 1.02 8.06 -2.91 -0.02 1.00 16 34 H 0.22 1.21 5.55 -2.91 -0.02 1.19 16 35 H 0.09 0.66 7.41 -2.39 -0.02 0.64 16 36 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.09 0.78 7.41 -2.39 -0.02 0.76 16 38 H 0.04 1.42 6.10 -2.39 -0.01 1.41 16 39 H 0.09 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.07 1.67 8.14 -2.38 -0.02 1.65 16 41 H 0.05 1.72 8.14 -2.39 -0.02 1.71 16 42 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 43 H 0.05 2.27 6.14 -2.38 -0.01 2.25 16 44 H 0.09 3.07 8.14 -2.39 -0.02 3.05 16 45 H 0.12 3.20 8.14 -2.39 -0.02 3.18 16 46 H 0.07 2.65 5.80 -2.39 -0.01 2.64 16 47 H 0.06 2.58 8.12 -2.38 -0.02 2.56 16 48 H 0.38 23.03 6.12 -92.71 -0.57 22.46 16 49 H 0.24 14.90 8.31 -92.71 -0.77 14.13 16 50 H 0.03 1.37 7.14 -2.39 -0.02 1.35 16 51 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 Total: -1.00 -92.04 395.98 5.33 -86.71 By element: Atomic # 1 Polarization: 43.33 SS G_CDS: 0.38 Total: 43.71 kcal Atomic # 6 Polarization: 11.73 SS G_CDS: 7.27 Total: 18.99 kcal Atomic # 7 Polarization: -134.92 SS G_CDS: -4.22 Total: -139.14 kcal Atomic # 8 Polarization: -59.90 SS G_CDS: -0.13 Total: -60.02 kcal Atomic # 14 Polarization: 47.72 SS G_CDS: 2.03 Total: 49.75 kcal Total: -92.04 5.33 -86.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000999522999.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.850 kcal (2) G-P(sol) polarization free energy of solvation -92.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.709 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds