Wall clock time and date at job start Wed Apr 1 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47411 * 2 1 4 4 C 1.53003 * 109.46940 * 239.99742 * 2 1 3 5 5 N 1.46500 * 109.46993 * 120.00373 * 2 1 3 6 6 C 1.35438 * 119.46735 * 239.97044 * 5 2 1 7 7 C 1.35761 * 121.22971 * 179.97438 * 6 5 2 8 8 C 1.39469 * 120.13111 * 359.79193 * 7 6 5 9 9 C 1.39347 * 118.95506 * 0.48106 * 8 7 6 10 10 C 1.47082 * 120.58487 * 179.78003 * 9 8 7 11 11 O 1.21651 * 119.99830 * 1.70893 * 10 9 8 12 12 N 1.34771 * 120.00102 * 181.71706 * 10 9 8 13 13 C 1.46499 * 120.00046 * 175.27920 * 12 10 9 14 14 H 1.09002 * 109.52490 * 325.08006 * 13 12 10 15 15 C 1.53042 * 109.49846 * 204.99375 * 13 12 10 16 16 C 1.53042 * 109.53748 * 178.68345 * 15 13 12 17 17 C 1.53183 * 109.31215 * 61.37128 * 16 15 13 18 18 N 1.46928 * 108.77729 * 305.35891 * 17 16 15 19 19 C 1.36933 * 120.63244 * 233.58785 * 18 17 16 20 20 H 1.08002 * 119.99735 * 152.40423 * 19 18 17 21 21 C 1.38805 * 120.00100 * 332.40444 * 19 18 17 22 22 N 1.31612 * 120.00145 * 339.11858 * 21 19 18 23 23 Si 1.86803 * 119.99710 * 159.12447 * 21 19 18 24 24 H 1.48508 * 109.46963 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47294 * 59.99789 * 23 21 19 26 26 H 1.48498 * 109.47029 * 299.99371 * 23 21 19 27 27 C 1.46928 * 118.73448 * 53.86330 * 18 17 16 28 28 C 1.34650 * 119.47348 * 59.99952 * 5 2 1 29 29 O 1.21882 * 120.10392 * 359.96972 * 28 5 2 30 30 H 1.09008 * 109.46679 * 299.99994 * 1 2 3 31 31 H 1.08998 * 109.47111 * 59.99590 * 1 2 3 32 32 H 1.09001 * 109.47273 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47265 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47318 * 300.00283 * 3 2 1 35 35 H 1.08997 * 109.46913 * 59.99946 * 3 2 1 36 36 H 1.09000 * 109.47537 * 300.00567 * 4 2 1 37 37 H 1.09007 * 109.46803 * 60.00316 * 4 2 1 38 38 H 1.09001 * 109.47322 * 179.97438 * 4 2 1 39 39 H 1.07991 * 119.38741 * 0.02562 * 6 5 2 40 40 H 1.07992 * 119.93432 * 180.02562 * 7 6 5 41 41 H 1.07996 * 120.52813 * 180.25757 * 8 7 6 42 42 H 0.97001 * 120.00423 * 355.27359 * 12 10 9 43 43 H 1.09002 * 109.45634 * 58.66935 * 15 13 12 44 44 H 1.08997 * 109.45078 * 298.69876 * 15 13 12 45 45 H 1.09000 * 109.50012 * 301.41537 * 16 15 13 46 46 H 1.09006 * 109.49196 * 181.32115 * 16 15 13 47 47 H 1.09006 * 109.58534 * 185.57592 * 17 16 15 48 48 H 1.08999 * 109.59384 * 65.15317 * 17 16 15 49 49 H 0.97002 * 120.00015 * 354.03745 * 22 21 19 50 50 H 1.08997 * 109.58504 * 65.92558 * 27 18 17 51 51 H 1.09000 * 109.58895 * 186.35537 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1961 6 6 2.7968 -0.0224 2.0803 7 6 3.2683 -0.6272 3.2005 8 6 2.9512 -1.9597 3.4630 9 6 2.1556 -2.6554 2.5548 10 6 1.8032 -4.0633 2.7936 11 8 2.1811 -4.6215 3.8063 12 7 1.0619 -4.7349 1.8905 13 6 0.7978 -6.1638 2.0768 14 1 1.6664 -6.6383 2.5334 15 6 0.5159 -6.8124 0.7196 16 6 0.2723 -8.3113 0.9094 17 6 -0.9523 -8.5159 1.8066 18 7 -0.7505 -7.7742 3.0587 19 6 -0.8677 -8.4037 4.2691 20 1 -0.3176 -8.0378 5.1235 21 6 -1.6935 -9.5119 4.3980 22 7 -2.6566 -9.7199 3.5255 23 14 -1.4380 -10.7078 5.8101 24 1 -2.4431 -11.7976 5.7238 25 1 -1.5958 -9.9907 7.1009 26 1 -0.0725 -11.2856 5.7284 27 6 -0.4265 -6.3429 2.9875 28 6 1.6865 -1.9799 1.3986 29 8 0.9849 -2.5645 0.5915 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 1.6766 -1.7490 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1300 -0.7210 -1.2495 39 1 3.0463 1.0111 1.8911 40 1 3.8871 -0.0743 3.8916 41 1 3.3194 -2.4460 4.3542 42 1 0.7030 -4.2722 1.1171 43 1 1.3721 -6.6642 0.0615 44 1 -0.3676 -6.3544 0.2749 45 1 1.1459 -8.7656 1.3769 46 1 0.0948 -8.7766 -0.0603 47 1 -1.0716 -9.5771 2.0256 48 1 -1.8427 -8.1430 1.3004 49 1 -2.8454 -9.0560 2.8439 50 1 -1.2748 -5.7963 2.5755 51 1 -0.1986 -5.9697 3.9859 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001008792564.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:05 Heat of formation + Delta-G solvation = -10.497498 kcal Electronic energy + Delta-G solvation = -31841.095461 eV Core-core repulsion = 27741.793476 eV Total energy + Delta-G solvation = -4099.301986 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.17465 -39.40867 -37.54985 -37.44884 -36.63017 -34.21453 -32.52981 -32.23244 -30.54440 -30.24273 -28.75792 -27.97165 -27.81346 -25.02748 -24.84495 -23.80915 -22.32296 -21.83462 -20.92184 -20.05602 -19.19617 -18.02074 -17.46515 -17.28878 -17.05785 -16.24527 -16.09253 -15.33897 -14.83653 -14.77935 -14.43110 -14.30103 -14.20839 -13.92496 -13.81141 -13.46526 -13.23080 -13.13693 -13.04435 -12.71113 -12.66721 -12.53972 -12.44491 -12.32867 -12.10556 -11.98859 -11.82683 -11.67588 -11.62982 -10.99682 -10.64924 -10.56166 -10.29734 -10.21047 -10.05934 -9.94744 -9.91936 -9.79227 -9.48241 -9.14488 -8.64316 -8.33130 -8.15026 -6.73914 -5.90622 -3.10772 0.19878 1.51179 2.07924 2.81306 3.58976 3.62534 3.64039 3.75511 3.80635 3.90936 4.05037 4.22966 4.34166 4.50350 4.62280 4.71549 4.80015 4.88794 4.95106 4.97081 5.18776 5.20952 5.23087 5.36281 5.38292 5.39696 5.50054 5.55027 5.60658 5.71343 5.73272 5.79889 5.83772 5.87349 5.93309 6.12262 6.15245 6.24668 6.33222 6.56538 6.58073 6.65685 6.75260 6.86098 6.91243 7.13074 7.23345 7.32623 7.62176 8.13592 8.17744 8.70942 8.76404 9.25323 9.98709 10.41609 11.36427 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019118 B = 0.002589 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.236775 B =10813.533701 C =11578.972233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.144 3.856 3 C -0.164 4.164 4 C -0.165 4.165 5 N -0.481 5.481 6 C 0.146 3.854 7 C -0.239 4.239 8 C 0.053 3.947 9 C -0.267 4.267 10 C 0.569 3.431 11 O -0.548 6.548 12 N -0.708 5.708 13 C 0.126 3.874 14 H 0.082 0.918 15 C -0.113 4.113 16 C -0.133 4.133 17 C 0.145 3.855 18 N -0.597 5.597 19 C -0.338 4.338 20 H 0.057 0.943 21 C -0.029 4.029 22 N -0.926 5.926 23 Si 1.068 2.932 24 H -0.286 1.286 25 H -0.293 1.293 26 H -0.293 1.293 27 C 0.146 3.854 28 C 0.533 3.467 29 O -0.536 6.536 30 H 0.058 0.942 31 H 0.074 0.926 32 H 0.089 0.911 33 H 0.069 0.931 34 H 0.084 0.916 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.074 0.926 38 H 0.057 0.943 39 H 0.170 0.830 40 H 0.153 0.847 41 H 0.150 0.850 42 H 0.410 0.590 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.055 0.945 47 H 0.084 0.916 48 H 0.017 0.983 49 H 0.269 0.731 50 H 0.015 0.985 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.920 27.356 -9.895 31.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.062 3.938 3 C -0.222 4.222 4 C -0.222 4.222 5 N -0.190 5.190 6 C 0.016 3.984 7 C -0.262 4.262 8 C 0.029 3.971 9 C -0.274 4.274 10 C 0.355 3.645 11 O -0.428 6.428 12 N -0.368 5.368 13 C 0.020 3.980 14 H 0.101 0.899 15 C -0.151 4.151 16 C -0.173 4.173 17 C 0.019 3.981 18 N -0.321 5.321 19 C -0.468 4.468 20 H 0.075 0.925 21 C -0.230 4.230 22 N -0.568 5.568 23 Si 0.898 3.102 24 H -0.211 1.211 25 H -0.221 1.221 26 H -0.221 1.221 27 C 0.018 3.982 28 C 0.335 3.665 29 O -0.419 6.419 30 H 0.077 0.923 31 H 0.093 0.907 32 H 0.108 0.892 33 H 0.088 0.912 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.093 0.907 38 H 0.077 0.923 39 H 0.187 0.813 40 H 0.170 0.830 41 H 0.168 0.832 42 H 0.255 0.745 43 H 0.070 0.930 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.074 0.926 47 H 0.103 0.897 48 H 0.035 0.965 49 H 0.080 0.920 50 H 0.033 0.967 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 12.148 25.142 -9.142 29.381 hybrid contribution 0.511 2.007 -0.881 2.251 sum 12.659 27.149 -10.023 31.588 Atomic orbital electron populations 1.22254 0.92094 1.05365 1.02581 1.21065 0.96200 0.92363 0.84163 1.22313 1.01966 0.93796 1.04099 1.22246 1.01207 1.03450 0.95304 1.45701 1.40768 1.12052 1.20491 1.22313 0.88721 0.98589 0.88774 1.20697 1.09302 0.96208 0.99957 1.22063 0.86626 0.92386 0.95984 1.21214 1.10253 0.97231 0.98726 1.17415 0.78846 0.84669 0.83535 1.90811 1.55848 1.69044 1.27094 1.46622 1.51936 1.10953 1.27255 1.21728 1.00430 0.79043 0.96756 0.89942 1.21645 1.00599 0.97105 0.95791 1.22060 1.01442 0.94145 0.99661 1.21058 0.92536 0.98682 0.85823 1.44092 1.82555 1.03065 1.02354 1.20072 1.23984 1.14252 0.88480 0.92490 1.25861 0.92954 1.00597 1.03565 1.70774 1.27134 1.39049 1.19798 0.83473 0.75609 0.76306 0.74774 1.21150 1.22057 1.22067 1.21266 0.92721 0.86506 0.97659 1.16969 0.81952 0.80255 0.87279 1.90560 1.40055 1.64132 1.47131 0.92278 0.90728 0.89228 0.91216 0.89747 0.91181 0.89267 0.90742 0.92347 0.81310 0.82961 0.83236 0.74484 0.92974 0.92311 0.92154 0.92627 0.89726 0.96544 0.92009 0.96731 0.92206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.23 8.39 37.16 0.31 -0.92 16 2 C 0.14 0.94 1.02 -131.82 -0.13 0.81 16 3 C -0.16 -0.48 7.09 37.16 0.26 -0.21 16 4 C -0.16 -1.17 8.39 37.16 0.31 -0.86 16 5 N -0.48 -4.05 2.53 -105.39 -0.27 -4.32 16 6 C 0.15 0.82 9.58 -16.85 -0.16 0.66 16 7 C -0.24 -1.55 9.99 -40.01 -0.40 -1.95 16 8 C 0.05 0.56 9.70 -38.71 -0.38 0.19 16 9 C -0.27 -3.78 5.92 -104.50 -0.62 -4.40 16 10 C 0.57 10.64 7.71 -12.68 -0.10 10.54 16 11 O -0.55 -12.03 16.10 5.23 0.08 -11.95 16 12 N -0.71 -13.30 4.98 -54.65 -0.27 -13.57 16 13 C 0.13 2.66 2.58 -67.58 -0.17 2.49 16 14 H 0.08 1.93 7.65 -51.93 -0.40 1.53 16 15 C -0.11 -2.14 5.35 -26.69 -0.14 -2.28 16 16 C -0.13 -2.72 6.08 -26.62 -0.16 -2.89 16 17 C 0.14 3.63 4.59 -3.71 -0.02 3.61 16 18 N -0.60 -16.37 2.87 -172.05 -0.49 -16.87 16 19 C -0.34 -10.21 9.54 -15.06 -0.14 -10.36 16 20 H 0.06 1.76 7.91 -52.49 -0.42 1.34 16 21 C -0.03 -0.87 4.81 -17.44 -0.08 -0.96 16 22 N -0.93 -28.98 12.33 55.49 0.68 -28.29 16 23 Si 1.07 26.75 29.97 -169.99 -5.09 21.66 16 24 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 25 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 26 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 27 C 0.15 3.59 6.12 -3.48 -0.02 3.57 16 28 C 0.53 6.73 6.84 -14.92 -0.10 6.63 16 29 O -0.54 -7.77 9.81 5.03 0.05 -7.72 16 30 H 0.06 0.42 8.14 -51.92 -0.42 0.00 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.09 0.95 6.12 -51.93 -0.32 0.63 16 33 H 0.07 0.13 7.41 -51.93 -0.38 -0.25 16 34 H 0.08 0.17 8.14 -51.93 -0.42 -0.25 16 35 H 0.07 0.15 7.41 -51.93 -0.38 -0.24 16 36 H 0.09 0.90 6.12 -51.93 -0.32 0.58 16 37 H 0.07 0.39 8.14 -51.92 -0.42 -0.03 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.17 0.29 5.55 -52.49 -0.29 0.00 16 40 H 0.15 0.50 8.06 -52.49 -0.42 0.08 16 41 H 0.15 1.58 7.69 -52.49 -0.40 1.18 16 42 H 0.41 7.25 5.19 -40.83 -0.21 7.03 16 43 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 44 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.08 2.34 6.15 -51.93 -0.32 2.02 16 48 H 0.02 0.42 7.79 -51.93 -0.40 0.01 16 49 H 0.27 8.44 6.31 -40.82 -0.26 8.18 16 50 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 51 H 0.06 1.58 7.93 -51.93 -0.41 1.17 16 LS Contribution 392.33 15.07 5.91 5.91 Total: -1.00 -37.09 392.33 -9.11 -46.20 By element: Atomic # 1 Polarization: 13.24 SS G_CDS: -7.96 Total: 5.28 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -1.75 Total: 3.67 kcal Atomic # 7 Polarization: -62.70 SS G_CDS: -0.35 Total: -63.05 kcal Atomic # 8 Polarization: -19.80 SS G_CDS: 0.13 Total: -19.66 kcal Atomic # 14 Polarization: 26.75 SS G_CDS: -5.09 Total: 21.66 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -37.09 -9.11 -46.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008792564.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.698 kcal (2) G-P(sol) polarization free energy of solvation -37.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.497 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds