Wall clock time and date at job start Wed Apr 1 2020 05:33:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47411 * 2 1 4 4 C 1.53003 * 109.46940 * 239.99742 * 2 1 3 5 5 N 1.46500 * 109.46993 * 120.00373 * 2 1 3 6 6 C 1.35438 * 119.46735 * 239.97044 * 5 2 1 7 7 C 1.35761 * 121.22971 * 179.97438 * 6 5 2 8 8 C 1.39469 * 120.13111 * 359.79193 * 7 6 5 9 9 C 1.39347 * 118.95506 * 0.48106 * 8 7 6 10 10 C 1.47082 * 120.58487 * 179.78003 * 9 8 7 11 11 O 1.21651 * 119.99830 * 1.70893 * 10 9 8 12 12 N 1.34771 * 120.00102 * 181.71706 * 10 9 8 13 13 C 1.46499 * 120.00046 * 175.27920 * 12 10 9 14 14 H 1.09002 * 109.52490 * 325.08006 * 13 12 10 15 15 C 1.53042 * 109.49846 * 204.99375 * 13 12 10 16 16 C 1.53042 * 109.53748 * 178.68345 * 15 13 12 17 17 C 1.53183 * 109.31215 * 61.37128 * 16 15 13 18 18 N 1.46928 * 108.77729 * 305.35891 * 17 16 15 19 19 C 1.36933 * 120.63244 * 233.58785 * 18 17 16 20 20 H 1.08002 * 119.99735 * 152.40423 * 19 18 17 21 21 C 1.38805 * 120.00100 * 332.40444 * 19 18 17 22 22 N 1.31612 * 120.00145 * 339.11858 * 21 19 18 23 23 Si 1.86803 * 119.99710 * 159.12447 * 21 19 18 24 24 H 1.48508 * 109.46963 * 179.97438 * 23 21 19 25 25 H 1.48494 * 109.47294 * 59.99789 * 23 21 19 26 26 H 1.48498 * 109.47029 * 299.99371 * 23 21 19 27 27 C 1.46928 * 118.73448 * 53.86330 * 18 17 16 28 28 C 1.34650 * 119.47348 * 59.99952 * 5 2 1 29 29 O 1.21882 * 120.10392 * 359.96972 * 28 5 2 30 30 H 1.09008 * 109.46679 * 299.99994 * 1 2 3 31 31 H 1.08998 * 109.47111 * 59.99590 * 1 2 3 32 32 H 1.09001 * 109.47273 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47265 * 180.02562 * 3 2 1 34 34 H 1.08998 * 109.47318 * 300.00283 * 3 2 1 35 35 H 1.08997 * 109.46913 * 59.99946 * 3 2 1 36 36 H 1.09000 * 109.47537 * 300.00567 * 4 2 1 37 37 H 1.09007 * 109.46803 * 60.00316 * 4 2 1 38 38 H 1.09001 * 109.47322 * 179.97438 * 4 2 1 39 39 H 1.07991 * 119.38741 * 0.02562 * 6 5 2 40 40 H 1.07992 * 119.93432 * 180.02562 * 7 6 5 41 41 H 1.07996 * 120.52813 * 180.25757 * 8 7 6 42 42 H 0.97001 * 120.00423 * 355.27359 * 12 10 9 43 43 H 1.09002 * 109.45634 * 58.66935 * 15 13 12 44 44 H 1.08997 * 109.45078 * 298.69876 * 15 13 12 45 45 H 1.09000 * 109.50012 * 301.41537 * 16 15 13 46 46 H 1.09006 * 109.49196 * 181.32115 * 16 15 13 47 47 H 1.09006 * 109.58534 * 185.57592 * 17 16 15 48 48 H 1.08999 * 109.59384 * 65.15317 * 17 16 15 49 49 H 0.97002 * 120.00015 * 354.03745 * 22 21 19 50 50 H 1.08997 * 109.58504 * 65.92558 * 27 18 17 51 51 H 1.09000 * 109.58895 * 186.35537 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6907 1.1961 6 6 2.7968 -0.0224 2.0803 7 6 3.2683 -0.6272 3.2005 8 6 2.9512 -1.9597 3.4630 9 6 2.1556 -2.6554 2.5548 10 6 1.8032 -4.0633 2.7936 11 8 2.1811 -4.6215 3.8063 12 7 1.0619 -4.7349 1.8905 13 6 0.7978 -6.1638 2.0768 14 1 1.6664 -6.6383 2.5334 15 6 0.5159 -6.8124 0.7196 16 6 0.2723 -8.3113 0.9094 17 6 -0.9523 -8.5159 1.8066 18 7 -0.7505 -7.7742 3.0587 19 6 -0.8677 -8.4037 4.2691 20 1 -0.3176 -8.0378 5.1235 21 6 -1.6935 -9.5119 4.3980 22 7 -2.6566 -9.7199 3.5255 23 14 -1.4380 -10.7078 5.8101 24 1 -2.4431 -11.7976 5.7238 25 1 -1.5958 -9.9907 7.1009 26 1 -0.0725 -11.2856 5.7284 27 6 -0.4265 -6.3429 2.9875 28 6 1.6865 -1.9799 1.3986 29 8 0.9849 -2.5645 0.5915 30 1 -0.3633 0.5139 0.8901 31 1 -0.3633 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 3.1301 1.4424 -0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9562 0.8900 36 1 1.6766 -1.7490 -1.2493 37 1 1.6766 -0.2074 -2.1393 38 1 3.1300 -0.7210 -1.2495 39 1 3.0463 1.0111 1.8911 40 1 3.8871 -0.0743 3.8916 41 1 3.3194 -2.4460 4.3542 42 1 0.7030 -4.2722 1.1171 43 1 1.3721 -6.6642 0.0615 44 1 -0.3676 -6.3544 0.2749 45 1 1.1459 -8.7656 1.3769 46 1 0.0948 -8.7766 -0.0603 47 1 -1.0716 -9.5771 2.0256 48 1 -1.8427 -8.1430 1.3004 49 1 -2.8454 -9.0560 2.8439 50 1 -1.2748 -5.7963 2.5755 51 1 -0.1986 -5.9697 3.9859 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001008792564.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:04 Heat of formation + Delta-G solvation = -35.755786 kcal Electronic energy + Delta-G solvation = -31842.190743 eV Core-core repulsion = 27741.793476 eV Total energy + Delta-G solvation = -4100.397267 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -42.93997 -40.85839 -39.21490 -38.39149 -37.41839 -36.08730 -34.15015 -33.19757 -32.36031 -31.38697 -30.20010 -28.61394 -28.36681 -27.18871 -25.78168 -24.68952 -24.09834 -23.47217 -22.07127 -21.31347 -20.83533 -19.52262 -18.93296 -18.17909 -18.09475 -17.07541 -16.99466 -16.74015 -16.28519 -16.15325 -15.79123 -15.51144 -15.46389 -15.31467 -15.24544 -14.90695 -14.83133 -14.42115 -14.16862 -13.83238 -13.67417 -13.62166 -13.16216 -13.12791 -13.11455 -13.00367 -12.80151 -12.62825 -12.59639 -12.49304 -12.18457 -12.13304 -12.00732 -11.89899 -11.87267 -11.77079 -11.27824 -11.13325 -11.08772 -10.74518 -10.64853 -10.11270 -9.11551 -8.98282 -8.28423 -5.49071 -0.59599 0.76914 1.40220 1.54110 1.62849 1.70289 1.82753 2.27351 2.62860 2.68855 3.18191 3.35637 3.48832 3.63948 3.70884 3.78753 3.83019 3.87416 3.90747 3.94189 3.95677 4.07638 4.20867 4.26461 4.36656 4.52664 4.59537 4.61386 4.63711 4.68171 4.74880 4.83406 4.83521 4.86394 4.90581 4.94417 4.95576 5.03683 5.06879 5.18211 5.18709 5.22739 5.28017 5.29152 5.36457 5.48929 5.57291 5.75329 5.95693 6.34131 6.58440 6.87364 6.98107 7.34231 7.70540 8.12005 8.94567 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019118 B = 0.002589 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.236775 B =10813.533701 C =11578.972233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.139 3.861 3 C -0.161 4.161 4 C -0.163 4.163 5 N -0.477 5.477 6 C 0.177 3.823 7 C -0.239 4.239 8 C 0.071 3.929 9 C -0.326 4.326 10 C 0.562 3.438 11 O -0.598 6.598 12 N -0.706 5.706 13 C 0.140 3.860 14 H 0.055 0.945 15 C -0.103 4.103 16 C -0.122 4.122 17 C 0.149 3.851 18 N -0.615 5.615 19 C -0.358 4.358 20 H 0.039 0.961 21 C -0.073 4.073 22 N -0.942 5.942 23 Si 1.121 2.879 24 H -0.282 1.282 25 H -0.279 1.279 26 H -0.279 1.279 27 C 0.152 3.848 28 C 0.528 3.472 29 O -0.567 6.567 30 H 0.061 0.939 31 H 0.094 0.906 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.098 0.902 35 H 0.087 0.913 36 H 0.051 0.949 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.227 0.773 40 H 0.197 0.803 41 H 0.142 0.858 42 H 0.416 0.584 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.052 0.948 46 H 0.091 0.909 47 H 0.055 0.945 48 H 0.011 0.989 49 H 0.256 0.744 50 H 0.011 0.989 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.042 31.346 -11.010 36.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.058 3.942 3 C -0.218 4.218 4 C -0.221 4.221 5 N -0.183 5.183 6 C 0.047 3.953 7 C -0.261 4.261 8 C 0.047 3.953 9 C -0.333 4.333 10 C 0.352 3.648 11 O -0.481 6.481 12 N -0.367 5.367 13 C 0.033 3.967 14 H 0.074 0.926 15 C -0.141 4.141 16 C -0.161 4.161 17 C 0.023 3.977 18 N -0.340 5.340 19 C -0.488 4.488 20 H 0.057 0.943 21 C -0.269 4.269 22 N -0.584 5.584 23 Si 0.944 3.056 24 H -0.208 1.208 25 H -0.205 1.205 26 H -0.205 1.205 27 C 0.025 3.975 28 C 0.331 3.669 29 O -0.452 6.452 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.069 0.931 33 H 0.108 0.892 34 H 0.117 0.883 35 H 0.106 0.894 36 H 0.070 0.930 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.243 0.757 40 H 0.214 0.786 41 H 0.160 0.840 42 H 0.263 0.737 43 H 0.101 0.899 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.110 0.890 47 H 0.074 0.926 48 H 0.029 0.971 49 H 0.066 0.934 50 H 0.029 0.971 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 14.284 29.205 -10.312 34.108 hybrid contribution -0.124 1.008 -0.538 1.149 sum 14.160 30.213 -10.850 35.087 Atomic orbital electron populations 1.22233 0.93187 1.03145 1.03697 1.21338 0.95505 0.94500 0.82849 1.22365 1.03243 0.90388 1.05809 1.22219 1.01531 1.01671 0.96657 1.45819 1.40153 1.10803 1.21503 1.23317 0.84961 1.00292 0.86736 1.21157 1.09619 0.94173 1.01154 1.22312 0.84379 0.94145 0.94486 1.20829 1.15170 0.95329 1.02006 1.18197 0.77610 0.86593 0.82405 1.90757 1.57760 1.70726 1.28889 1.46602 1.52407 1.09848 1.27800 1.21305 0.97228 0.80947 0.97176 0.92637 1.21575 1.02205 0.95659 0.94640 1.21929 0.98569 0.95518 1.00131 1.21005 0.94569 0.96469 0.85616 1.44309 1.83024 1.04152 1.02534 1.20237 1.24017 1.15154 0.89376 0.94270 1.27350 0.92080 1.02060 1.05423 1.70888 1.28300 1.38839 1.20386 0.82801 0.76169 0.74303 0.72351 1.20783 1.20477 1.20481 1.21221 0.94170 0.85198 0.96885 1.16786 0.81857 0.81714 0.86517 1.90518 1.41542 1.65234 1.47935 0.91991 0.88758 0.93109 0.89181 0.88302 0.89423 0.92961 0.88824 0.91674 0.75702 0.78587 0.84018 0.73709 0.89933 0.91474 0.92914 0.89013 0.92637 0.97118 0.93374 0.97113 0.95392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.21 8.39 71.98 0.60 -1.61 16 2 C 0.14 1.39 1.02 3.60 0.00 1.39 16 3 C -0.16 0.01 7.09 71.98 0.51 0.52 16 4 C -0.16 -2.01 8.39 71.98 0.60 -1.40 16 5 N -0.48 -6.78 2.53 -605.56 -1.53 -8.31 16 6 C 0.18 1.10 9.58 83.56 0.80 1.90 16 7 C -0.24 -2.11 9.99 21.99 0.22 -1.89 16 8 C 0.07 1.46 9.70 22.83 0.22 1.68 16 9 C -0.33 -9.61 5.92 -19.79 -0.12 -9.73 16 10 C 0.56 22.70 7.71 86.56 0.67 23.37 16 11 O -0.60 -28.58 16.10 -4.19 -0.07 -28.65 16 12 N -0.71 -28.42 4.98 -445.05 -2.22 -30.64 16 13 C 0.14 6.29 2.58 45.22 0.12 6.40 16 14 H 0.06 2.79 7.65 -2.39 -0.02 2.77 16 15 C -0.10 -3.91 5.35 30.62 0.16 -3.75 16 16 C -0.12 -5.01 6.08 30.67 0.19 -4.82 16 17 C 0.15 7.74 4.59 86.36 0.40 8.13 16 18 N -0.62 -35.72 2.87 -698.25 -2.00 -37.73 16 19 C -0.36 -22.75 9.54 84.03 0.80 -21.95 16 20 H 0.04 2.57 7.91 -2.91 -0.02 2.55 16 21 C -0.07 -4.54 4.81 84.86 0.41 -4.13 16 22 N -0.94 -60.82 12.33 21.65 0.27 -60.56 16 23 Si 1.12 55.16 29.97 68.60 2.06 57.21 16 24 H -0.28 -13.67 7.11 99.48 0.71 -12.97 16 25 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 26 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 27 C 0.15 8.05 6.12 86.51 0.53 8.58 16 28 C 0.53 13.43 6.84 85.16 0.58 14.01 16 29 O -0.57 -17.31 9.81 -4.93 -0.05 -17.36 16 30 H 0.06 0.77 8.14 -2.38 -0.02 0.75 16 31 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.05 1.11 6.12 -2.39 -0.01 1.10 16 33 H 0.09 -0.30 7.41 -2.39 -0.02 -0.32 16 34 H 0.10 -0.17 8.14 -2.39 -0.02 -0.18 16 35 H 0.09 -0.24 7.41 -2.39 -0.02 -0.26 16 36 H 0.05 1.07 6.12 -2.39 -0.01 1.05 16 37 H 0.09 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 39 H 0.23 -1.06 5.55 -2.92 -0.02 -1.08 16 40 H 0.20 0.08 8.06 -2.91 -0.02 0.06 16 41 H 0.14 3.08 7.69 -2.91 -0.02 3.05 16 42 H 0.42 15.65 5.19 -92.87 -0.48 15.17 16 43 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 44 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 45 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 46 H 0.09 3.13 8.14 -2.38 -0.02 3.11 16 47 H 0.06 3.20 6.15 -2.38 -0.01 3.18 16 48 H 0.01 0.57 7.79 -2.39 -0.02 0.55 16 49 H 0.26 16.79 6.31 -92.71 -0.58 16.21 16 50 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 51 H 0.03 1.60 7.93 -2.39 -0.02 1.58 16 Total: -1.00 -91.20 392.33 3.79 -87.40 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.64 Total: 21.90 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: 6.70 Total: 16.72 kcal Atomic # 7 Polarization: -131.74 SS G_CDS: -5.49 Total: -137.23 kcal Atomic # 8 Polarization: -45.89 SS G_CDS: -0.12 Total: -46.01 kcal Atomic # 14 Polarization: 55.16 SS G_CDS: 2.06 Total: 57.21 kcal Total: -91.20 3.79 -87.40 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001008792564.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.649 kcal (2) G-P(sol) polarization free energy of solvation -91.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.792 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.405 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds