Wall clock time and date at job start Wed Apr 1 2020 05:30:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47329 * 2 1 4 4 C 1.52999 * 109.47106 * 239.99354 * 2 1 3 5 5 N 1.46495 * 109.47186 * 185.00256 * 4 2 1 6 6 C 1.35440 * 119.47150 * 269.73437 * 5 4 2 7 7 C 1.35762 * 121.22740 * 179.71731 * 6 5 4 8 8 C 1.39468 * 120.13416 * 0.55050 * 7 6 5 9 9 C 1.39333 * 118.95827 * 359.72743 * 8 7 6 10 10 C 1.47076 * 120.58654 * 179.97438 * 9 8 7 11 11 O 1.21651 * 120.00189 * 354.12325 * 10 9 8 12 12 N 1.34779 * 120.00213 * 174.12548 * 10 9 8 13 13 C 1.46500 * 120.00219 * 184.89766 * 12 10 9 14 14 C 1.53003 * 110.88140 * 62.42985 * 13 12 10 15 15 C 1.55153 * 111.00656 * 186.34615 * 13 12 10 16 16 C 1.54327 * 102.93863 * 82.57450 * 15 13 12 17 17 N 1.47024 * 107.26962 * 22.19393 * 16 15 13 18 18 C 1.36936 * 125.64592 * 181.02031 * 17 16 15 19 19 H 1.08001 * 119.99753 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00177 * 0.04194 * 18 17 16 21 21 N 1.31624 * 120.00238 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00188 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47241 * 59.99609 * 22 20 18 24 24 H 1.48499 * 109.47449 * 180.02562 * 22 20 18 25 25 H 1.48510 * 109.46996 * 300.00203 * 22 20 18 26 26 C 1.47422 * 108.70307 * 1.06131 * 17 16 15 27 27 C 1.34654 * 119.47550 * 89.99885 * 5 4 2 28 28 O 1.21887 * 120.09863 * 0.02623 * 27 5 4 29 29 H 1.09005 * 109.47404 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47344 * 300.00321 * 1 2 3 31 31 H 1.09005 * 109.47343 * 60.00191 * 1 2 3 32 32 H 1.09005 * 109.46626 * 119.99601 * 2 1 3 33 33 H 1.08998 * 109.47170 * 59.99572 * 3 2 1 34 34 H 1.08996 * 109.47007 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46487 * 299.99690 * 3 2 1 36 36 H 1.08998 * 109.47292 * 305.00552 * 4 2 1 37 37 H 1.08999 * 109.47125 * 65.00500 * 4 2 1 38 38 H 1.08000 * 119.38657 * 359.97401 * 6 5 4 39 39 H 1.08002 * 119.93172 * 180.25933 * 7 6 5 40 40 H 1.07995 * 120.51773 * 179.71208 * 8 7 6 41 41 H 0.97001 * 119.99772 * 4.90032 * 12 10 9 42 42 H 1.08993 * 109.47477 * 60.69879 * 14 13 12 43 43 H 1.09001 * 109.46909 * 180.70206 * 14 13 12 44 44 H 1.09002 * 109.47383 * 300.69491 * 14 13 12 45 45 H 1.08997 * 110.72237 * 200.93582 * 15 13 12 46 46 H 1.08998 * 110.72331 * 324.21800 * 15 13 12 47 47 H 1.08997 * 109.88573 * 262.77782 * 16 15 13 48 48 H 1.09006 * 110.00893 * 141.68367 * 16 15 13 49 49 H 0.96994 * 119.99889 * 179.97438 * 21 20 18 50 50 H 1.09001 * 110.36564 * 217.03338 * 26 17 16 51 51 H 1.08995 * 110.46358 * 94.75496 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.4999 -0.8266 -1.1905 6 6 4.2610 0.1573 -1.7263 7 6 5.6168 0.0991 -1.6868 8 6 6.2538 -0.9926 -1.0972 9 6 5.4773 -2.0113 -0.5488 10 6 6.1116 -3.1792 0.0813 11 8 7.3195 -3.3152 0.0331 12 7 5.3546 -4.0988 0.7120 13 6 5.9925 -5.2043 1.4311 14 6 6.8521 -4.6813 2.5837 15 6 4.9358 -6.2196 1.9407 16 6 4.6761 -7.1001 0.7001 17 7 5.8491 -6.9747 -0.1774 18 6 6.0053 -7.5855 -1.3930 19 1 6.9088 -7.4292 -1.9636 20 6 5.0022 -8.4051 -1.8919 21 7 3.9007 -8.5948 -1.1968 22 14 5.2156 -9.2388 -3.5499 23 1 6.4115 -10.1182 -3.5115 24 1 4.0113 -10.0530 -3.8532 25 1 5.3934 -8.2073 -4.6034 26 6 6.8296 -6.0833 0.4687 27 6 4.0639 -1.9024 -0.6094 28 8 3.3623 -2.7803 -0.1374 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5138 0.8901 33 1 1.6766 1.9563 0.8899 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9562 -0.8901 36 1 1.6053 -1.7199 -1.2950 37 1 1.7517 -0.1585 -2.1369 38 1 3.7803 1.0060 -2.1901 39 1 6.2033 0.8974 -2.1170 40 1 7.3319 -1.0476 -1.0664 41 1 4.3874 -4.0287 0.6897 42 1 6.2235 -4.1354 3.2872 43 1 7.3248 -5.5204 3.0942 44 1 7.6206 -4.0155 2.1909 45 1 5.3376 -6.8162 2.7597 46 1 4.0242 -5.7065 2.2470 47 1 3.7843 -6.7524 0.1788 48 1 4.5477 -8.1399 1.0010 49 1 3.1997 -9.1672 -1.5457 50 1 7.3265 -5.4623 -0.2767 51 1 7.5632 -6.6647 1.0271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046676932.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:59 Heat of formation + Delta-G solvation = -9.042675 kcal Electronic energy + Delta-G solvation = -32287.096717 eV Core-core repulsion = 28187.857818 eV Total energy + Delta-G solvation = -4099.238900 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.74018 -39.43644 -37.35039 -37.17033 -36.38029 -33.64979 -33.50567 -31.59159 -30.33825 -29.57209 -28.45689 -27.68791 -27.26774 -25.51885 -24.84892 -23.41008 -22.96023 -21.14949 -20.60961 -19.98562 -18.99130 -17.86635 -17.43981 -17.08327 -16.50578 -16.15390 -15.88787 -15.24802 -15.07637 -14.65046 -14.50451 -14.44929 -13.98569 -13.92090 -13.53109 -13.39737 -13.15019 -12.78160 -12.74931 -12.60768 -12.48552 -12.33113 -12.13111 -11.87103 -11.75323 -11.65113 -11.60010 -11.46234 -11.35962 -11.14828 -10.77203 -10.74192 -10.27578 -10.20099 -10.07572 -10.01146 -9.92474 -9.71803 -9.48226 -9.11887 -8.44265 -8.27441 -8.06419 -6.60750 -5.54046 -2.84882 0.36489 1.69543 2.31418 3.00334 3.50638 3.53602 3.55763 3.82987 3.94310 4.20794 4.23595 4.35722 4.55397 4.60414 4.64635 4.82414 4.88343 5.03947 5.14128 5.14720 5.17320 5.33347 5.35270 5.38189 5.46039 5.58108 5.65584 5.68257 5.68776 5.79128 5.81944 5.82629 5.91281 5.94119 6.05086 6.21557 6.26203 6.34631 6.38267 6.53125 6.62664 6.75509 6.79367 6.92735 7.06507 7.45688 7.72226 7.78737 7.81613 7.98261 8.39581 8.44509 8.96616 9.40435 10.01206 10.68924 11.58026 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.003469 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.566684 B = 8069.273604 C = 8705.462781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.112 4.112 3 C -0.154 4.154 4 C 0.090 3.910 5 N -0.489 5.489 6 C 0.153 3.847 7 C -0.240 4.240 8 C 0.049 3.951 9 C -0.261 4.261 10 C 0.575 3.425 11 O -0.553 6.553 12 N -0.685 5.685 13 C 0.153 3.847 14 C -0.147 4.147 15 C -0.146 4.146 16 C 0.179 3.821 17 N -0.602 5.602 18 C -0.217 4.217 19 H 0.075 0.925 20 C -0.012 4.012 21 N -0.924 5.924 22 Si 0.909 3.091 23 H -0.286 1.286 24 H -0.291 1.291 25 H -0.287 1.287 26 C 0.130 3.870 27 C 0.528 3.472 28 O -0.530 6.530 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.081 0.919 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.107 0.893 37 H 0.092 0.908 38 H 0.163 0.837 39 H 0.151 0.849 40 H 0.149 0.851 41 H 0.413 0.587 42 H 0.048 0.952 43 H 0.062 0.938 44 H 0.067 0.933 45 H 0.070 0.930 46 H 0.062 0.938 47 H 0.045 0.955 48 H 0.042 0.958 49 H 0.250 0.750 50 H 0.059 0.941 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.590 25.326 2.646 25.874 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.131 4.131 3 C -0.211 4.211 4 C -0.031 4.031 5 N -0.197 5.197 6 C 0.024 3.976 7 C -0.264 4.264 8 C 0.026 3.974 9 C -0.268 4.268 10 C 0.362 3.638 11 O -0.434 6.434 12 N -0.344 5.344 13 C 0.066 3.934 14 C -0.205 4.205 15 C -0.184 4.184 16 C 0.055 3.945 17 N -0.328 5.328 18 C -0.346 4.346 19 H 0.093 0.907 20 C -0.207 4.207 21 N -0.573 5.573 22 Si 0.740 3.260 23 H -0.213 1.213 24 H -0.217 1.217 25 H -0.214 1.214 26 C 0.004 3.996 27 C 0.330 3.670 28 O -0.411 6.411 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.100 0.900 33 H 0.080 0.920 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.125 0.875 37 H 0.111 0.889 38 H 0.181 0.819 39 H 0.169 0.831 40 H 0.166 0.834 41 H 0.259 0.741 42 H 0.067 0.933 43 H 0.081 0.919 44 H 0.086 0.914 45 H 0.089 0.911 46 H 0.081 0.919 47 H 0.063 0.937 48 H 0.060 0.940 49 H 0.060 0.940 50 H 0.077 0.923 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -4.467 24.457 2.812 25.020 hybrid contribution -0.406 -0.337 -1.080 1.202 sum -4.873 24.120 1.732 24.668 Atomic orbital electron populations 1.21753 0.93580 1.02672 1.02177 1.21458 0.96888 0.96434 0.98329 1.21966 1.01150 0.95590 1.02371 1.22231 0.77143 1.04380 0.99351 1.45455 1.09011 1.18416 1.46806 1.22125 0.92585 0.91118 0.91819 1.20650 0.92919 1.02376 1.10413 1.21985 1.01537 0.88951 0.84898 1.21225 0.92094 1.00783 1.12697 1.17299 0.86418 0.81815 0.78277 1.90715 1.13901 1.77490 1.61312 1.46297 1.11959 1.24569 1.51563 1.21467 0.94079 0.86016 0.91855 1.21963 1.00014 1.01517 0.97052 1.23188 0.97450 0.97430 1.00360 1.21120 0.90593 0.96231 0.86600 1.44419 1.15708 1.53738 1.18936 1.19025 1.01548 1.20738 0.93298 0.90738 1.24751 0.96605 1.00669 0.98698 1.69959 1.07447 1.42226 1.37647 0.86226 0.76680 0.79154 0.83896 1.21279 1.21722 1.21437 1.21910 0.91931 0.91035 0.94770 1.17095 0.88948 0.81273 0.79715 1.90680 1.63543 1.38197 1.48699 0.91871 0.92008 0.92397 0.90018 0.92017 0.92578 0.92348 0.87497 0.88938 0.81930 0.83095 0.83363 0.74147 0.93296 0.91918 0.91357 0.91093 0.91889 0.93686 0.93992 0.93999 0.92306 0.96033 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.19 37.16 0.34 -0.54 16 2 C -0.11 -0.81 3.12 -90.62 -0.28 -1.10 16 3 C -0.15 -0.82 8.65 37.16 0.32 -0.50 16 4 C 0.09 0.73 4.83 -4.05 -0.02 0.72 16 5 N -0.49 -5.01 2.46 -119.34 -0.29 -5.30 16 6 C 0.15 1.07 8.21 -16.85 -0.14 0.93 16 7 C -0.24 -1.86 9.99 -40.01 -0.40 -2.26 16 8 C 0.05 0.59 9.69 -38.72 -0.38 0.21 16 9 C -0.26 -4.19 5.92 -104.51 -0.62 -4.81 16 10 C 0.58 11.52 7.15 -12.68 -0.09 11.43 16 11 O -0.55 -11.98 13.16 5.23 0.07 -11.91 16 12 N -0.69 -14.24 5.08 -46.79 -0.24 -14.48 16 13 C 0.15 3.19 0.82 -129.67 -0.11 3.08 16 14 C -0.15 -2.57 8.62 37.16 0.32 -2.25 16 15 C -0.15 -3.03 5.99 -24.90 -0.15 -3.18 16 16 C 0.18 4.75 5.37 -3.06 -0.02 4.73 16 17 N -0.60 -16.99 3.39 -170.08 -0.58 -17.57 16 18 C -0.22 -6.62 10.28 -15.06 -0.15 -6.78 16 19 H 0.07 2.22 7.83 -52.49 -0.41 1.81 16 20 C -0.01 -0.36 5.49 -17.43 -0.10 -0.45 16 21 N -0.92 -28.76 10.31 55.49 0.57 -28.19 16 22 Si 0.91 23.59 29.55 -169.99 -5.02 18.56 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 C 0.13 3.20 6.10 -2.53 -0.02 3.18 16 27 C 0.53 8.04 7.44 -14.92 -0.11 7.93 16 28 O -0.53 -9.74 13.26 5.02 0.07 -9.68 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.32 6.35 -51.93 -0.33 -0.01 16 35 H 0.06 0.22 8.14 -51.93 -0.42 -0.20 16 36 H 0.11 1.11 7.38 -51.93 -0.38 0.73 16 37 H 0.09 0.46 7.99 -51.93 -0.42 0.05 16 38 H 0.16 0.44 7.89 -52.49 -0.41 0.03 16 39 H 0.15 0.66 8.06 -52.49 -0.42 0.24 16 40 H 0.15 1.69 7.71 -52.49 -0.40 1.29 16 41 H 0.41 8.73 5.10 -40.82 -0.21 8.53 16 42 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.06 1.01 8.13 -51.93 -0.42 0.58 16 44 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 45 H 0.07 1.34 8.04 -51.93 -0.42 0.93 16 46 H 0.06 1.21 8.05 -51.93 -0.42 0.79 16 47 H 0.04 1.32 7.38 -51.93 -0.38 0.94 16 48 H 0.04 1.20 7.50 -51.93 -0.39 0.81 16 49 H 0.25 7.55 8.31 -40.82 -0.34 7.21 16 50 H 0.06 1.55 6.15 -51.93 -0.32 1.23 16 51 H 0.02 0.53 8.03 -51.93 -0.42 0.11 16 LS Contribution 398.91 15.07 6.01 6.01 Total: -1.00 -37.60 398.91 -9.20 -46.79 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -8.19 Total: 5.40 kcal Atomic # 6 Polarization: 11.95 SS G_CDS: -1.59 Total: 10.36 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: -0.54 Total: -65.54 kcal Atomic # 8 Polarization: -21.73 SS G_CDS: 0.14 Total: -21.59 kcal Atomic # 14 Polarization: 23.59 SS G_CDS: -5.02 Total: 18.56 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -37.60 -9.20 -46.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046676932.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.751 kcal (2) G-P(sol) polarization free energy of solvation -37.596 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds