Wall clock time and date at job start Wed Apr 1 2020 05:30:58
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52996 * 1
3 3 C 1.52995 * 109.47329 * 2 1
4 4 C 1.52999 * 109.47106 * 239.99354 * 2 1 3
5 5 N 1.46495 * 109.47186 * 185.00256 * 4 2 1
6 6 C 1.35440 * 119.47150 * 269.73437 * 5 4 2
7 7 C 1.35762 * 121.22740 * 179.71731 * 6 5 4
8 8 C 1.39468 * 120.13416 * 0.55050 * 7 6 5
9 9 C 1.39333 * 118.95827 * 359.72743 * 8 7 6
10 10 C 1.47076 * 120.58654 * 179.97438 * 9 8 7
11 11 O 1.21651 * 120.00189 * 354.12325 * 10 9 8
12 12 N 1.34779 * 120.00213 * 174.12548 * 10 9 8
13 13 C 1.46500 * 120.00219 * 184.89766 * 12 10 9
14 14 C 1.53003 * 110.88140 * 62.42985 * 13 12 10
15 15 C 1.55153 * 111.00656 * 186.34615 * 13 12 10
16 16 C 1.54327 * 102.93863 * 82.57450 * 15 13 12
17 17 N 1.47024 * 107.26962 * 22.19393 * 16 15 13
18 18 C 1.36936 * 125.64592 * 181.02031 * 17 16 15
19 19 H 1.08001 * 119.99753 * 180.02562 * 18 17 16
20 20 C 1.38809 * 120.00177 * 0.04194 * 18 17 16
21 21 N 1.31624 * 120.00238 * 0.02562 * 20 18 17
22 22 Si 1.86803 * 120.00188 * 180.02562 * 20 18 17
23 23 H 1.48493 * 109.47241 * 59.99609 * 22 20 18
24 24 H 1.48499 * 109.47449 * 180.02562 * 22 20 18
25 25 H 1.48510 * 109.46996 * 300.00203 * 22 20 18
26 26 C 1.47422 * 108.70307 * 1.06131 * 17 16 15
27 27 C 1.34654 * 119.47550 * 89.99885 * 5 4 2
28 28 O 1.21887 * 120.09863 * 0.02623 * 27 5 4
29 29 H 1.09005 * 109.47404 * 180.02562 * 1 2 3
30 30 H 1.08998 * 109.47344 * 300.00321 * 1 2 3
31 31 H 1.09005 * 109.47343 * 60.00191 * 1 2 3
32 32 H 1.09005 * 109.46626 * 119.99601 * 2 1 3
33 33 H 1.08998 * 109.47170 * 59.99572 * 3 2 1
34 34 H 1.08996 * 109.47007 * 180.02562 * 3 2 1
35 35 H 1.09005 * 109.46487 * 299.99690 * 3 2 1
36 36 H 1.08998 * 109.47292 * 305.00552 * 4 2 1
37 37 H 1.08999 * 109.47125 * 65.00500 * 4 2 1
38 38 H 1.08000 * 119.38657 * 359.97401 * 6 5 4
39 39 H 1.08002 * 119.93172 * 180.25933 * 7 6 5
40 40 H 1.07995 * 120.51773 * 179.71208 * 8 7 6
41 41 H 0.97001 * 119.99772 * 4.90032 * 12 10 9
42 42 H 1.08993 * 109.47477 * 60.69879 * 14 13 12
43 43 H 1.09001 * 109.46909 * 180.70206 * 14 13 12
44 44 H 1.09002 * 109.47383 * 300.69491 * 14 13 12
45 45 H 1.08997 * 110.72237 * 200.93582 * 15 13 12
46 46 H 1.08998 * 110.72331 * 324.21800 * 15 13 12
47 47 H 1.08997 * 109.88573 * 262.77782 * 16 15 13
48 48 H 1.09006 * 110.00893 * 141.68367 * 16 15 13
49 49 H 0.96994 * 119.99889 * 179.97438 * 21 20 18
50 50 H 1.09001 * 110.36564 * 217.03338 * 26 17 16
51 51 H 1.08995 * 110.46358 * 94.75496 * 26 17 16
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0400 -0.7214 -1.2491
5 7 3.4999 -0.8266 -1.1905
6 6 4.2610 0.1573 -1.7263
7 6 5.6168 0.0991 -1.6868
8 6 6.2538 -0.9926 -1.0972
9 6 5.4773 -2.0113 -0.5488
10 6 6.1116 -3.1792 0.0813
11 8 7.3195 -3.3152 0.0331
12 7 5.3546 -4.0988 0.7120
13 6 5.9925 -5.2043 1.4311
14 6 6.8521 -4.6813 2.5837
15 6 4.9358 -6.2196 1.9407
16 6 4.6761 -7.1001 0.7001
17 7 5.8491 -6.9747 -0.1774
18 6 6.0053 -7.5855 -1.3930
19 1 6.9088 -7.4292 -1.9636
20 6 5.0022 -8.4051 -1.8919
21 7 3.9007 -8.5948 -1.1968
22 14 5.2156 -9.2388 -3.5499
23 1 6.4115 -10.1182 -3.5115
24 1 4.0113 -10.0530 -3.8532
25 1 5.3934 -8.2073 -4.6034
26 6 6.8296 -6.0833 0.4687
27 6 4.0639 -1.9024 -0.6094
28 8 3.3623 -2.7803 -0.1374
29 1 -0.3634 -1.0277 0.0005
30 1 -0.3634 0.5139 0.8899
31 1 -0.3634 0.5138 -0.8900
32 1 1.8932 -0.5138 0.8901
33 1 1.6766 1.9563 0.8899
34 1 3.1300 1.4424 -0.0005
35 1 1.6767 1.9562 -0.8901
36 1 1.6053 -1.7199 -1.2950
37 1 1.7517 -0.1585 -2.1369
38 1 3.7803 1.0060 -2.1901
39 1 6.2033 0.8974 -2.1170
40 1 7.3319 -1.0476 -1.0664
41 1 4.3874 -4.0287 0.6897
42 1 6.2235 -4.1354 3.2872
43 1 7.3248 -5.5204 3.0942
44 1 7.6206 -4.0155 2.1909
45 1 5.3376 -6.8162 2.7597
46 1 4.0242 -5.7065 2.2470
47 1 3.7843 -6.7524 0.1788
48 1 4.5477 -8.1399 1.0010
49 1 3.1997 -9.1672 -1.5457
50 1 7.3265 -5.4623 -0.2767
51 1 7.5632 -6.6647 1.0271
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001046676932.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:30:58
Heat of formation + Delta-G solvation = -35.031766 kcal
Electronic energy + Delta-G solvation = -32288.223689 eV
Core-core repulsion = 28187.857818 eV
Total energy + Delta-G solvation = -4100.365871 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.14 seconds
Orbital eigenvalues (eV)
-42.69009 -40.96852 -38.85696 -38.34531 -37.20250 -35.59745 -34.35885 -33.48694
-31.82147 -30.94306 -30.31444 -28.19197 -27.92031 -27.54341 -26.01767 -25.24833
-23.85251 -22.56546 -21.95998 -21.26092 -20.56799 -19.21790 -18.70501 -18.39799
-17.86365 -17.09053 -16.98515 -16.84704 -16.61629 -15.92022 -15.80259 -15.60480
-15.52875 -15.33106 -14.95687 -14.74211 -14.23310 -13.93813 -13.88814 -13.65433
-13.48906 -13.45169 -13.38983 -13.20461 -13.07222 -13.00118 -12.84298 -12.77827
-12.75226 -12.28744 -12.16656 -12.08752 -12.02129 -11.92417 -11.72040 -11.70042
-11.61674 -11.06452 -10.97422 -10.73510 -10.67592 -9.85953 -9.07364 -8.88060
-7.86968 -5.21959 -0.52909 0.80608 1.38286 1.43710 1.47968 1.50138
1.82323 2.46236 2.46995 2.75698 3.29972 3.48032 3.56619 3.69353
3.70039 3.77514 3.87416 3.96315 3.99092 4.04155 4.14382 4.16727
4.23580 4.35807 4.57285 4.59693 4.65228 4.68523 4.78437 4.81115
4.82473 4.86862 4.89815 4.94742 4.99535 5.00576 5.00886 5.06760
5.21848 5.23262 5.31920 5.36727 5.37798 5.38162 5.53154 5.60093
5.69056 5.83667 5.91821 6.16727 6.68296 6.95715 7.07730 7.45208
7.74565 8.40998 9.23292
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.010613 B = 0.003469 C = 0.003216
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2637.566684 B = 8069.273604 C = 8705.462781
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.141 4.141
2 C -0.108 4.108
3 C -0.149 4.149
4 C 0.086 3.914
5 N -0.482 5.482
6 C 0.182 3.818
7 C -0.240 4.240
8 C 0.073 3.927
9 C -0.327 4.327
10 C 0.566 3.434
11 O -0.585 6.585
12 N -0.696 5.696
13 C 0.157 3.843
14 C -0.135 4.135
15 C -0.130 4.130
16 C 0.192 3.808
17 N -0.620 5.620
18 C -0.246 4.246
19 H 0.071 0.929
20 C -0.065 4.065
21 N -0.949 5.949
22 Si 0.982 3.018
23 H -0.274 1.274
24 H -0.287 1.287
25 H -0.281 1.281
26 C 0.129 3.871
27 C 0.518 3.482
28 O -0.582 6.582
29 H 0.043 0.957
30 H 0.065 0.935
31 H 0.081 0.919
32 H 0.043 0.957
33 H 0.060 0.940
34 H 0.054 0.946
35 H 0.088 0.912
36 H 0.074 0.926
37 H 0.140 0.860
38 H 0.227 0.773
39 H 0.200 0.800
40 H 0.148 0.852
41 H 0.409 0.591
42 H 0.070 0.930
43 H 0.080 0.920
44 H 0.057 0.943
45 H 0.098 0.902
46 H 0.080 0.920
47 H 0.004 0.996
48 H 0.013 0.987
49 H 0.247 0.753
50 H 0.035 0.965
51 H 0.028 0.972
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -4.865 29.373 1.158 29.796
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.199 4.199
2 C -0.127 4.127
3 C -0.206 4.206
4 C -0.034 4.034
5 N -0.188 5.188
6 C 0.052 3.948
7 C -0.261 4.261
8 C 0.049 3.951
9 C -0.334 4.334
10 C 0.356 3.644
11 O -0.469 6.469
12 N -0.355 5.355
13 C 0.069 3.931
14 C -0.193 4.193
15 C -0.168 4.168
16 C 0.067 3.933
17 N -0.346 5.346
18 C -0.375 4.375
19 H 0.088 0.912
20 C -0.258 4.258
21 N -0.598 5.598
22 Si 0.809 3.191
23 H -0.200 1.200
24 H -0.213 1.213
25 H -0.207 1.207
26 C 0.003 3.997
27 C 0.322 3.678
28 O -0.467 6.467
29 H 0.062 0.938
30 H 0.084 0.916
31 H 0.100 0.900
32 H 0.062 0.938
33 H 0.079 0.921
34 H 0.073 0.927
35 H 0.107 0.893
36 H 0.092 0.908
37 H 0.158 0.842
38 H 0.243 0.757
39 H 0.217 0.783
40 H 0.166 0.834
41 H 0.254 0.746
42 H 0.089 0.911
43 H 0.099 0.901
44 H 0.076 0.924
45 H 0.116 0.884
46 H 0.098 0.902
47 H 0.022 0.978
48 H 0.031 0.969
49 H 0.056 0.944
50 H 0.053 0.947
51 H 0.046 0.954
Dipole moment (debyes) X Y Z Total
from point charges -4.736 28.558 1.328 28.979
hybrid contribution -0.345 -1.410 -0.725 1.623
sum -5.081 27.148 0.602 27.626
Atomic orbital electron populations
1.21740 0.92739 1.01913 1.03533 1.21396 0.97550 0.97569 0.96233
1.21951 1.00992 0.93718 1.03921 1.22475 0.75566 1.03603 1.01781
1.45523 1.10324 1.17645 1.45262 1.23234 0.92603 0.90667 0.88324
1.21178 0.93618 1.01830 1.09479 1.22288 1.01569 0.88684 0.82579
1.20937 0.93080 1.01615 1.17747 1.17965 0.86241 0.82562 0.77640
1.90660 1.14979 1.78551 1.62688 1.46448 1.11893 1.24816 1.52336
1.21464 0.93664 0.85990 0.91943 1.21870 0.99434 1.02057 0.95943
1.23070 0.98620 0.96804 0.98342 1.20835 0.88840 0.95471 0.88197
1.44680 1.16870 1.54197 1.18899 1.19361 1.01869 1.21650 0.94669
0.91153 1.25665 0.96184 1.01259 1.02653 1.70197 1.07957 1.42432
1.39187 0.85119 0.76961 0.78039 0.79000 1.20015 1.21262 1.20735
1.22004 0.91945 0.90832 0.94887 1.17074 0.88623 0.82117 0.80001
1.90624 1.64332 1.40388 1.51365 0.93763 0.91613 0.90017 0.93849
0.92080 0.92688 0.89297 0.90758 0.84181 0.75668 0.78319 0.83420
0.74580 0.91124 0.90121 0.92387 0.88406 0.90176 0.97769 0.96921
0.94370 0.94709 0.95392
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.53 9.19 71.98 0.66 -0.87 16
2 C -0.11 -1.41 3.12 -10.80 -0.03 -1.45 16
3 C -0.15 -1.00 8.65 71.98 0.62 -0.37 16
4 C 0.09 1.24 4.83 86.38 0.42 1.65 16
5 N -0.48 -8.97 2.46 -649.70 -1.60 -10.57 16
6 C 0.18 1.61 8.21 83.56 0.69 2.29 16
7 C -0.24 -2.61 9.99 21.99 0.22 -2.39 16
8 C 0.07 1.65 9.69 22.83 0.22 1.87 16
9 C -0.33 -10.90 5.92 -19.79 -0.12 -11.02 16
10 C 0.57 24.15 7.15 86.56 0.62 24.77 16
11 O -0.58 -26.86 13.16 -4.19 -0.06 -26.92 16
12 N -0.70 -30.84 5.08 -420.18 -2.14 -32.98 16
13 C 0.16 6.78 0.82 4.99 0.00 6.79 16
14 C -0.13 -4.69 8.62 71.98 0.62 -4.07 16
15 C -0.13 -5.57 5.99 31.78 0.19 -5.38 16
16 C 0.19 10.76 5.37 86.73 0.47 11.23 16
17 N -0.62 -37.00 3.39 -692.00 -2.35 -39.35 16
18 C -0.25 -15.74 10.28 84.03 0.86 -14.87 16
19 H 0.07 4.40 7.83 -2.91 -0.02 4.38 16
20 C -0.06 -4.05 5.49 84.86 0.47 -3.58 16
21 N -0.95 -61.70 10.31 21.65 0.22 -61.48 16
22 Si 0.98 49.83 29.55 68.60 2.03 51.86 16
23 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16
24 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16
25 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16
26 C 0.13 6.67 6.10 86.85 0.53 7.20 16
27 C 0.52 16.38 7.44 85.17 0.63 17.02 16
28 O -0.58 -23.27 13.26 -4.95 -0.07 -23.34 16
29 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16
30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16
31 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16
32 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16
33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16
34 H 0.05 0.38 6.35 -2.39 -0.02 0.37 16
35 H 0.09 0.10 8.14 -2.38 -0.02 0.08 16
36 H 0.07 1.61 7.38 -2.39 -0.02 1.60 16
37 H 0.14 0.69 7.99 -2.39 -0.02 0.67 16
38 H 0.23 -0.74 7.89 -2.91 -0.02 -0.76 16
39 H 0.20 0.36 8.06 -2.91 -0.02 0.34 16
40 H 0.15 3.29 7.71 -2.91 -0.02 3.26 16
41 H 0.41 18.74 5.10 -92.76 -0.47 18.27 16
42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16
43 H 0.08 2.49 8.13 -2.39 -0.02 2.47 16
44 H 0.06 2.16 6.62 -2.39 -0.02 2.14 16
45 H 0.10 3.66 8.04 -2.39 -0.02 3.64 16
46 H 0.08 3.16 8.05 -2.39 -0.02 3.14 16
47 H 0.00 0.26 7.38 -2.39 -0.02 0.24 16
48 H 0.01 0.77 7.50 -2.38 -0.02 0.75 16
49 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16
50 H 0.03 1.95 6.15 -2.39 -0.01 1.93 16
51 H 0.03 1.40 8.03 -2.39 -0.02 1.38 16
Total: -1.00 -93.09 398.91 3.57 -89.52
By element:
Atomic # 1 Polarization: 23.98 SS G_CDS: 0.45 Total: 24.43 kcal
Atomic # 6 Polarization: 21.74 SS G_CDS: 7.07 Total: 28.81 kcal
Atomic # 7 Polarization: -138.51 SS G_CDS: -5.86 Total: -144.37 kcal
Atomic # 8 Polarization: -50.13 SS G_CDS: -0.12 Total: -50.25 kcal
Atomic # 14 Polarization: 49.83 SS G_CDS: 2.03 Total: 51.86 kcal
Total: -93.09 3.57 -89.52 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001046676932.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.484 kcal
(2) G-P(sol) polarization free energy of solvation -93.087 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.603 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.516 kcal
(6) G-S(sol) free energy of system = (1) + (5) -35.032 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.14 seconds