Wall clock time and date at job start Wed Apr 1 2020 05:30:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47329 * 2 1 4 4 C 1.52999 * 109.47106 * 239.99354 * 2 1 3 5 5 N 1.46495 * 109.47186 * 185.00256 * 4 2 1 6 6 C 1.35440 * 119.47150 * 269.73437 * 5 4 2 7 7 C 1.35762 * 121.22740 * 179.71731 * 6 5 4 8 8 C 1.39468 * 120.13416 * 0.55050 * 7 6 5 9 9 C 1.39333 * 118.95827 * 359.72743 * 8 7 6 10 10 C 1.47076 * 120.58654 * 179.97438 * 9 8 7 11 11 O 1.21651 * 120.00189 * 354.12325 * 10 9 8 12 12 N 1.34779 * 120.00213 * 174.12548 * 10 9 8 13 13 C 1.46500 * 120.00219 * 184.89766 * 12 10 9 14 14 C 1.53003 * 110.88140 * 62.42985 * 13 12 10 15 15 C 1.55153 * 111.00656 * 186.34615 * 13 12 10 16 16 C 1.54327 * 102.93863 * 82.57450 * 15 13 12 17 17 N 1.47024 * 107.26962 * 22.19393 * 16 15 13 18 18 C 1.36936 * 125.64592 * 181.02031 * 17 16 15 19 19 H 1.08001 * 119.99753 * 180.02562 * 18 17 16 20 20 C 1.38809 * 120.00177 * 0.04194 * 18 17 16 21 21 N 1.31624 * 120.00238 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 120.00188 * 180.02562 * 20 18 17 23 23 H 1.48493 * 109.47241 * 59.99609 * 22 20 18 24 24 H 1.48499 * 109.47449 * 180.02562 * 22 20 18 25 25 H 1.48510 * 109.46996 * 300.00203 * 22 20 18 26 26 C 1.47422 * 108.70307 * 1.06131 * 17 16 15 27 27 C 1.34654 * 119.47550 * 89.99885 * 5 4 2 28 28 O 1.21887 * 120.09863 * 0.02623 * 27 5 4 29 29 H 1.09005 * 109.47404 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.47344 * 300.00321 * 1 2 3 31 31 H 1.09005 * 109.47343 * 60.00191 * 1 2 3 32 32 H 1.09005 * 109.46626 * 119.99601 * 2 1 3 33 33 H 1.08998 * 109.47170 * 59.99572 * 3 2 1 34 34 H 1.08996 * 109.47007 * 180.02562 * 3 2 1 35 35 H 1.09005 * 109.46487 * 299.99690 * 3 2 1 36 36 H 1.08998 * 109.47292 * 305.00552 * 4 2 1 37 37 H 1.08999 * 109.47125 * 65.00500 * 4 2 1 38 38 H 1.08000 * 119.38657 * 359.97401 * 6 5 4 39 39 H 1.08002 * 119.93172 * 180.25933 * 7 6 5 40 40 H 1.07995 * 120.51773 * 179.71208 * 8 7 6 41 41 H 0.97001 * 119.99772 * 4.90032 * 12 10 9 42 42 H 1.08993 * 109.47477 * 60.69879 * 14 13 12 43 43 H 1.09001 * 109.46909 * 180.70206 * 14 13 12 44 44 H 1.09002 * 109.47383 * 300.69491 * 14 13 12 45 45 H 1.08997 * 110.72237 * 200.93582 * 15 13 12 46 46 H 1.08998 * 110.72331 * 324.21800 * 15 13 12 47 47 H 1.08997 * 109.88573 * 262.77782 * 16 15 13 48 48 H 1.09006 * 110.00893 * 141.68367 * 16 15 13 49 49 H 0.96994 * 119.99889 * 179.97438 * 21 20 18 50 50 H 1.09001 * 110.36564 * 217.03338 * 26 17 16 51 51 H 1.08995 * 110.46358 * 94.75496 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 3.4999 -0.8266 -1.1905 6 6 4.2610 0.1573 -1.7263 7 6 5.6168 0.0991 -1.6868 8 6 6.2538 -0.9926 -1.0972 9 6 5.4773 -2.0113 -0.5488 10 6 6.1116 -3.1792 0.0813 11 8 7.3195 -3.3152 0.0331 12 7 5.3546 -4.0988 0.7120 13 6 5.9925 -5.2043 1.4311 14 6 6.8521 -4.6813 2.5837 15 6 4.9358 -6.2196 1.9407 16 6 4.6761 -7.1001 0.7001 17 7 5.8491 -6.9747 -0.1774 18 6 6.0053 -7.5855 -1.3930 19 1 6.9088 -7.4292 -1.9636 20 6 5.0022 -8.4051 -1.8919 21 7 3.9007 -8.5948 -1.1968 22 14 5.2156 -9.2388 -3.5499 23 1 6.4115 -10.1182 -3.5115 24 1 4.0113 -10.0530 -3.8532 25 1 5.3934 -8.2073 -4.6034 26 6 6.8296 -6.0833 0.4687 27 6 4.0639 -1.9024 -0.6094 28 8 3.3623 -2.7803 -0.1374 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8932 -0.5138 0.8901 33 1 1.6766 1.9563 0.8899 34 1 3.1300 1.4424 -0.0005 35 1 1.6767 1.9562 -0.8901 36 1 1.6053 -1.7199 -1.2950 37 1 1.7517 -0.1585 -2.1369 38 1 3.7803 1.0060 -2.1901 39 1 6.2033 0.8974 -2.1170 40 1 7.3319 -1.0476 -1.0664 41 1 4.3874 -4.0287 0.6897 42 1 6.2235 -4.1354 3.2872 43 1 7.3248 -5.5204 3.0942 44 1 7.6206 -4.0155 2.1909 45 1 5.3376 -6.8162 2.7597 46 1 4.0242 -5.7065 2.2470 47 1 3.7843 -6.7524 0.1788 48 1 4.5477 -8.1399 1.0010 49 1 3.1997 -9.1672 -1.5457 50 1 7.3265 -5.4623 -0.2767 51 1 7.5632 -6.6647 1.0271 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046676932.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:58 Heat of formation + Delta-G solvation = -35.031766 kcal Electronic energy + Delta-G solvation = -32288.223689 eV Core-core repulsion = 28187.857818 eV Total energy + Delta-G solvation = -4100.365871 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.69009 -40.96852 -38.85696 -38.34531 -37.20250 -35.59745 -34.35885 -33.48694 -31.82147 -30.94306 -30.31444 -28.19197 -27.92031 -27.54341 -26.01767 -25.24833 -23.85251 -22.56546 -21.95998 -21.26092 -20.56799 -19.21790 -18.70501 -18.39799 -17.86365 -17.09053 -16.98515 -16.84704 -16.61629 -15.92022 -15.80259 -15.60480 -15.52875 -15.33106 -14.95687 -14.74211 -14.23310 -13.93813 -13.88814 -13.65433 -13.48906 -13.45169 -13.38983 -13.20461 -13.07222 -13.00118 -12.84298 -12.77827 -12.75226 -12.28744 -12.16656 -12.08752 -12.02129 -11.92417 -11.72040 -11.70042 -11.61674 -11.06452 -10.97422 -10.73510 -10.67592 -9.85953 -9.07364 -8.88060 -7.86968 -5.21959 -0.52909 0.80608 1.38286 1.43710 1.47968 1.50138 1.82323 2.46236 2.46995 2.75698 3.29972 3.48032 3.56619 3.69353 3.70039 3.77514 3.87416 3.96315 3.99092 4.04155 4.14382 4.16727 4.23580 4.35807 4.57285 4.59693 4.65228 4.68523 4.78437 4.81115 4.82473 4.86862 4.89815 4.94742 4.99535 5.00576 5.00886 5.06760 5.21848 5.23262 5.31920 5.36727 5.37798 5.38162 5.53154 5.60093 5.69056 5.83667 5.91821 6.16727 6.68296 6.95715 7.07730 7.45208 7.74565 8.40998 9.23292 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010613 B = 0.003469 C = 0.003216 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2637.566684 B = 8069.273604 C = 8705.462781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.108 4.108 3 C -0.149 4.149 4 C 0.086 3.914 5 N -0.482 5.482 6 C 0.182 3.818 7 C -0.240 4.240 8 C 0.073 3.927 9 C -0.327 4.327 10 C 0.566 3.434 11 O -0.585 6.585 12 N -0.696 5.696 13 C 0.157 3.843 14 C -0.135 4.135 15 C -0.130 4.130 16 C 0.192 3.808 17 N -0.620 5.620 18 C -0.246 4.246 19 H 0.071 0.929 20 C -0.065 4.065 21 N -0.949 5.949 22 Si 0.982 3.018 23 H -0.274 1.274 24 H -0.287 1.287 25 H -0.281 1.281 26 C 0.129 3.871 27 C 0.518 3.482 28 O -0.582 6.582 29 H 0.043 0.957 30 H 0.065 0.935 31 H 0.081 0.919 32 H 0.043 0.957 33 H 0.060 0.940 34 H 0.054 0.946 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.140 0.860 38 H 0.227 0.773 39 H 0.200 0.800 40 H 0.148 0.852 41 H 0.409 0.591 42 H 0.070 0.930 43 H 0.080 0.920 44 H 0.057 0.943 45 H 0.098 0.902 46 H 0.080 0.920 47 H 0.004 0.996 48 H 0.013 0.987 49 H 0.247 0.753 50 H 0.035 0.965 51 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.865 29.373 1.158 29.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.127 4.127 3 C -0.206 4.206 4 C -0.034 4.034 5 N -0.188 5.188 6 C 0.052 3.948 7 C -0.261 4.261 8 C 0.049 3.951 9 C -0.334 4.334 10 C 0.356 3.644 11 O -0.469 6.469 12 N -0.355 5.355 13 C 0.069 3.931 14 C -0.193 4.193 15 C -0.168 4.168 16 C 0.067 3.933 17 N -0.346 5.346 18 C -0.375 4.375 19 H 0.088 0.912 20 C -0.258 4.258 21 N -0.598 5.598 22 Si 0.809 3.191 23 H -0.200 1.200 24 H -0.213 1.213 25 H -0.207 1.207 26 C 0.003 3.997 27 C 0.322 3.678 28 O -0.467 6.467 29 H 0.062 0.938 30 H 0.084 0.916 31 H 0.100 0.900 32 H 0.062 0.938 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.158 0.842 38 H 0.243 0.757 39 H 0.217 0.783 40 H 0.166 0.834 41 H 0.254 0.746 42 H 0.089 0.911 43 H 0.099 0.901 44 H 0.076 0.924 45 H 0.116 0.884 46 H 0.098 0.902 47 H 0.022 0.978 48 H 0.031 0.969 49 H 0.056 0.944 50 H 0.053 0.947 51 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges -4.736 28.558 1.328 28.979 hybrid contribution -0.345 -1.410 -0.725 1.623 sum -5.081 27.148 0.602 27.626 Atomic orbital electron populations 1.21740 0.92739 1.01913 1.03533 1.21396 0.97550 0.97569 0.96233 1.21951 1.00992 0.93718 1.03921 1.22475 0.75566 1.03603 1.01781 1.45523 1.10324 1.17645 1.45262 1.23234 0.92603 0.90667 0.88324 1.21178 0.93618 1.01830 1.09479 1.22288 1.01569 0.88684 0.82579 1.20937 0.93080 1.01615 1.17747 1.17965 0.86241 0.82562 0.77640 1.90660 1.14979 1.78551 1.62688 1.46448 1.11893 1.24816 1.52336 1.21464 0.93664 0.85990 0.91943 1.21870 0.99434 1.02057 0.95943 1.23070 0.98620 0.96804 0.98342 1.20835 0.88840 0.95471 0.88197 1.44680 1.16870 1.54197 1.18899 1.19361 1.01869 1.21650 0.94669 0.91153 1.25665 0.96184 1.01259 1.02653 1.70197 1.07957 1.42432 1.39187 0.85119 0.76961 0.78039 0.79000 1.20015 1.21262 1.20735 1.22004 0.91945 0.90832 0.94887 1.17074 0.88623 0.82117 0.80001 1.90624 1.64332 1.40388 1.51365 0.93763 0.91613 0.90017 0.93849 0.92080 0.92688 0.89297 0.90758 0.84181 0.75668 0.78319 0.83420 0.74580 0.91124 0.90121 0.92387 0.88406 0.90176 0.97769 0.96921 0.94370 0.94709 0.95392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.19 71.98 0.66 -0.87 16 2 C -0.11 -1.41 3.12 -10.80 -0.03 -1.45 16 3 C -0.15 -1.00 8.65 71.98 0.62 -0.37 16 4 C 0.09 1.24 4.83 86.38 0.42 1.65 16 5 N -0.48 -8.97 2.46 -649.70 -1.60 -10.57 16 6 C 0.18 1.61 8.21 83.56 0.69 2.29 16 7 C -0.24 -2.61 9.99 21.99 0.22 -2.39 16 8 C 0.07 1.65 9.69 22.83 0.22 1.87 16 9 C -0.33 -10.90 5.92 -19.79 -0.12 -11.02 16 10 C 0.57 24.15 7.15 86.56 0.62 24.77 16 11 O -0.58 -26.86 13.16 -4.19 -0.06 -26.92 16 12 N -0.70 -30.84 5.08 -420.18 -2.14 -32.98 16 13 C 0.16 6.78 0.82 4.99 0.00 6.79 16 14 C -0.13 -4.69 8.62 71.98 0.62 -4.07 16 15 C -0.13 -5.57 5.99 31.78 0.19 -5.38 16 16 C 0.19 10.76 5.37 86.73 0.47 11.23 16 17 N -0.62 -37.00 3.39 -692.00 -2.35 -39.35 16 18 C -0.25 -15.74 10.28 84.03 0.86 -14.87 16 19 H 0.07 4.40 7.83 -2.91 -0.02 4.38 16 20 C -0.06 -4.05 5.49 84.86 0.47 -3.58 16 21 N -0.95 -61.70 10.31 21.65 0.22 -61.48 16 22 Si 0.98 49.83 29.55 68.60 2.03 51.86 16 23 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 24 H -0.29 -14.26 7.11 99.48 0.71 -13.56 16 25 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 26 C 0.13 6.67 6.10 86.85 0.53 7.20 16 27 C 0.52 16.38 7.44 85.17 0.63 17.02 16 28 O -0.58 -23.27 13.26 -4.95 -0.07 -23.34 16 29 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 30 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 31 H 0.08 0.51 8.14 -2.38 -0.02 0.49 16 32 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 33 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 34 H 0.05 0.38 6.35 -2.39 -0.02 0.37 16 35 H 0.09 0.10 8.14 -2.38 -0.02 0.08 16 36 H 0.07 1.61 7.38 -2.39 -0.02 1.60 16 37 H 0.14 0.69 7.99 -2.39 -0.02 0.67 16 38 H 0.23 -0.74 7.89 -2.91 -0.02 -0.76 16 39 H 0.20 0.36 8.06 -2.91 -0.02 0.34 16 40 H 0.15 3.29 7.71 -2.91 -0.02 3.26 16 41 H 0.41 18.74 5.10 -92.76 -0.47 18.27 16 42 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 43 H 0.08 2.49 8.13 -2.39 -0.02 2.47 16 44 H 0.06 2.16 6.62 -2.39 -0.02 2.14 16 45 H 0.10 3.66 8.04 -2.39 -0.02 3.64 16 46 H 0.08 3.16 8.05 -2.39 -0.02 3.14 16 47 H 0.00 0.26 7.38 -2.39 -0.02 0.24 16 48 H 0.01 0.77 7.50 -2.38 -0.02 0.75 16 49 H 0.25 15.50 8.31 -92.71 -0.77 14.73 16 50 H 0.03 1.95 6.15 -2.39 -0.01 1.93 16 51 H 0.03 1.40 8.03 -2.39 -0.02 1.38 16 Total: -1.00 -93.09 398.91 3.57 -89.52 By element: Atomic # 1 Polarization: 23.98 SS G_CDS: 0.45 Total: 24.43 kcal Atomic # 6 Polarization: 21.74 SS G_CDS: 7.07 Total: 28.81 kcal Atomic # 7 Polarization: -138.51 SS G_CDS: -5.86 Total: -144.37 kcal Atomic # 8 Polarization: -50.13 SS G_CDS: -0.12 Total: -50.25 kcal Atomic # 14 Polarization: 49.83 SS G_CDS: 2.03 Total: 51.86 kcal Total: -93.09 3.57 -89.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046676932.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.484 kcal (2) G-P(sol) polarization free energy of solvation -93.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds