Wall clock time and date at job start Wed Apr 1 2020 05:31:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46460 * 2 1 4 4 C 1.52997 * 109.47429 * 120.00418 * 2 1 3 5 5 N 1.46491 * 109.46984 * 65.00314 * 4 2 1 6 6 C 1.35438 * 119.46923 * 270.01544 * 5 4 2 7 7 C 1.35767 * 121.22886 * 179.97438 * 6 5 4 8 8 C 1.39467 * 120.13212 * 359.79867 * 7 6 5 9 9 C 1.39338 * 118.95708 * 0.45216 * 8 7 6 10 10 C 1.47086 * 120.58397 * 179.80364 * 9 8 7 11 11 O 1.21639 * 120.00233 * 5.90457 * 10 9 8 12 12 N 1.34782 * 119.99809 * 185.90789 * 10 9 8 13 13 C 1.46499 * 119.99669 * 175.02061 * 12 10 9 14 14 C 1.53004 * 110.77852 * 298.21146 * 13 12 10 15 15 C 1.55408 * 110.69079 * 174.82711 * 13 12 10 16 16 C 1.54915 * 101.66032 * 277.04420 * 15 13 12 17 17 N 1.47420 * 104.83339 * 323.07716 * 16 15 13 18 18 C 1.36942 * 125.64710 * 204.09227 * 17 16 15 19 19 H 1.08001 * 119.99666 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00144 * 0.04372 * 18 17 16 21 21 N 1.31622 * 119.99721 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00176 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47189 * 59.99949 * 22 20 18 24 24 H 1.48498 * 109.47141 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47231 * 299.99922 * 22 20 18 26 26 C 1.47018 * 108.70688 * 24.12972 * 17 16 15 27 27 C 1.34651 * 119.47394 * 90.00076 * 5 4 2 28 28 O 1.21885 * 120.10150 * 359.97438 * 27 5 4 29 29 H 1.09003 * 109.46902 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47065 * 299.99119 * 1 2 3 31 31 H 1.08993 * 109.47592 * 59.99702 * 1 2 3 32 32 H 1.09003 * 109.46581 * 240.00922 * 2 1 3 33 33 H 1.09004 * 109.46715 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47461 * 300.00378 * 3 2 1 35 35 H 1.09003 * 109.46971 * 60.01160 * 3 2 1 36 36 H 1.09003 * 109.47115 * 304.99821 * 4 2 1 37 37 H 1.09003 * 109.46989 * 185.00149 * 4 2 1 38 38 H 1.08003 * 119.38683 * 359.97438 * 6 5 4 39 39 H 1.08006 * 119.92933 * 180.02562 * 7 6 5 40 40 H 1.07995 * 120.51980 * 180.23880 * 8 7 6 41 41 H 0.96997 * 119.99695 * 355.01844 * 12 10 9 42 42 H 1.09001 * 109.46772 * 181.78731 * 14 13 12 43 43 H 1.08996 * 109.47199 * 301.78342 * 14 13 12 44 44 H 1.08997 * 109.47061 * 61.79308 * 14 13 12 45 45 H 1.09004 * 110.88948 * 158.98158 * 15 13 12 46 46 H 1.08995 * 111.07581 * 35.19071 * 15 13 12 47 47 H 1.09000 * 110.36438 * 204.23874 * 16 15 13 48 48 H 1.08997 * 110.36348 * 81.91904 * 16 15 13 49 49 H 0.96999 * 119.99741 * 179.97438 * 21 20 18 50 50 H 1.09005 * 109.88625 * 118.35067 * 26 17 16 51 51 H 1.08995 * 109.88590 * 239.36945 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6527 -2.1328 1.1903 6 6 0.4687 -2.5215 1.7210 7 6 0.0739 -3.8200 1.6858 8 6 0.8889 -4.7836 1.0922 9 6 2.1108 -4.3920 0.5489 10 6 3.0002 -5.3793 -0.0818 11 8 2.6270 -6.5276 -0.2291 12 7 4.2288 -5.0115 -0.4965 13 6 5.1549 -6.0164 -1.0244 14 6 5.4833 -7.0645 0.0408 15 6 6.4507 -5.3432 -1.5562 16 6 6.0157 -4.9053 -2.9770 17 7 5.1364 -5.9886 -3.4531 18 6 4.8853 -6.2947 -4.7640 19 1 4.2224 -7.1110 -5.0105 20 6 5.4830 -5.5562 -5.7760 21 7 6.2907 -4.5613 -5.4755 22 14 5.1400 -5.9733 -7.5642 23 1 3.6857 -5.8396 -7.8335 24 1 5.8932 -5.0428 -8.4428 25 1 5.5678 -7.3688 -7.8379 26 6 4.5730 -6.6853 -2.2875 27 6 2.4791 -3.0230 0.6093 28 8 3.5402 -2.6540 0.1366 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 3.1299 1.4426 0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6055 -0.2618 2.1369 37 1 3.1264 -0.6443 1.2950 38 1 -0.1733 -1.7847 2.1808 39 1 -0.8748 -4.1066 2.1150 40 1 0.5793 -5.8177 1.0572 41 1 4.4996 -4.0815 -0.4454 42 1 6.1970 -7.7823 -0.3637 43 1 5.9162 -6.5736 0.9123 44 1 4.5708 -7.5845 0.3324 45 1 7.2704 -6.0603 -1.6022 46 1 6.7225 -4.4808 -0.9476 47 1 6.8852 -4.8091 -3.6272 48 1 5.4681 -3.9640 -2.9327 49 1 6.7087 -4.0455 -6.1827 50 1 3.4869 -6.5922 -2.2892 51 1 4.8548 -7.7378 -2.3128 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001046676933.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:03 Heat of formation + Delta-G solvation = -7.901954 kcal Electronic energy + Delta-G solvation = -32104.484252 eV Core-core repulsion = 28005.294818 eV Total energy + Delta-G solvation = -4099.189434 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.80903 -39.50229 -37.39808 -37.21450 -36.40129 -33.73028 -33.54748 -31.61123 -30.38909 -29.56623 -28.46232 -27.67489 -27.29566 -25.54208 -24.90177 -23.40054 -23.00857 -21.14635 -20.60907 -20.11303 -18.96641 -17.92474 -17.50758 -17.11946 -16.57020 -16.19484 -15.94742 -15.29591 -15.13251 -14.69550 -14.51964 -14.48607 -14.07198 -13.85357 -13.53826 -13.38935 -13.13714 -12.82488 -12.63940 -12.57155 -12.54067 -12.37534 -12.16829 -12.03151 -11.87621 -11.64854 -11.53058 -11.38077 -11.35063 -11.12644 -10.80884 -10.74308 -10.29262 -10.21840 -10.13343 -10.02340 -9.93582 -9.70093 -9.51638 -9.13778 -8.49398 -8.35277 -8.13710 -6.63478 -5.49827 -2.89560 0.29733 1.62491 2.25071 2.92934 3.50158 3.53152 3.55342 3.76938 3.87077 4.15478 4.18551 4.36171 4.54222 4.59960 4.62422 4.77122 4.83881 4.98174 5.09632 5.16035 5.17449 5.29508 5.37272 5.40685 5.48141 5.57113 5.62347 5.67536 5.72159 5.75739 5.78240 5.85299 5.92884 5.93323 6.00846 6.19820 6.24616 6.35376 6.43658 6.56164 6.68090 6.70286 6.73938 6.95383 7.06189 7.43962 7.68574 7.73428 7.78569 7.99230 8.32087 8.51501 8.89026 9.38580 9.99754 10.66613 11.54311 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010429 B = 0.003395 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.132218 B = 8246.291254 C = 9523.314426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.143 4.143 4 C 0.092 3.908 5 N -0.489 5.489 6 C 0.154 3.846 7 C -0.240 4.240 8 C 0.051 3.949 9 C -0.263 4.263 10 C 0.574 3.426 11 O -0.550 6.550 12 N -0.692 5.692 13 C 0.156 3.844 14 C -0.146 4.146 15 C -0.145 4.145 16 C 0.155 3.845 17 N -0.604 5.604 18 C -0.214 4.214 19 H 0.075 0.925 20 C -0.015 4.015 21 N -0.925 5.925 22 Si 0.913 3.087 23 H -0.287 1.287 24 H -0.291 1.291 25 H -0.286 1.286 26 C 0.137 3.863 27 C 0.528 3.472 28 O -0.532 6.532 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.084 0.916 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.056 0.944 36 H 0.092 0.908 37 H 0.105 0.895 38 H 0.164 0.836 39 H 0.152 0.848 40 H 0.149 0.851 41 H 0.413 0.587 42 H 0.063 0.937 43 H 0.048 0.952 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.061 0.939 47 H 0.106 0.894 48 H 0.011 0.989 49 H 0.250 0.750 50 H 0.037 0.963 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.766 10.782 21.005 26.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.134 4.134 3 C -0.201 4.201 4 C -0.029 4.029 5 N -0.197 5.197 6 C 0.024 3.976 7 C -0.263 4.263 8 C 0.028 3.972 9 C -0.270 4.270 10 C 0.360 3.640 11 O -0.431 6.431 12 N -0.351 5.351 13 C 0.069 3.931 14 C -0.205 4.205 15 C -0.184 4.184 16 C 0.030 3.970 17 N -0.330 5.330 18 C -0.343 4.343 19 H 0.093 0.907 20 C -0.209 4.209 21 N -0.574 5.574 22 Si 0.744 3.256 23 H -0.214 1.214 24 H -0.217 1.217 25 H -0.212 1.212 26 C 0.010 3.990 27 C 0.330 3.670 28 O -0.414 6.414 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.102 0.898 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.075 0.925 36 H 0.111 0.889 37 H 0.124 0.876 38 H 0.181 0.819 39 H 0.170 0.830 40 H 0.167 0.833 41 H 0.258 0.742 42 H 0.082 0.918 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.092 0.908 46 H 0.080 0.920 47 H 0.124 0.876 48 H 0.029 0.971 49 H 0.061 0.939 50 H 0.055 0.945 51 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -12.185 10.390 20.371 25.911 hybrid contribution -0.375 0.326 -0.887 1.016 sum -12.560 10.715 19.484 25.538 Atomic orbital electron populations 1.21966 0.94794 1.01916 1.02412 1.21486 0.96365 0.97141 0.98416 1.21743 1.01722 0.94413 1.02206 1.22223 1.03677 0.77566 0.99447 1.45467 1.16763 1.10658 1.46790 1.22141 0.86129 0.97492 0.91805 1.20665 1.03714 0.91575 1.10387 1.22003 0.89461 1.00835 0.84929 1.21230 0.99963 0.93153 1.12691 1.17339 0.81627 0.86746 0.78291 1.90739 1.75112 1.19521 1.57686 1.46469 1.13465 1.13420 1.61788 1.21375 0.89896 0.88671 0.93128 1.21998 1.02018 0.98541 0.97932 1.23362 0.95166 0.99648 1.00248 1.21902 0.96452 0.89330 0.89317 1.44507 1.52739 1.35244 1.00559 1.19063 1.22303 1.12109 0.80791 0.90677 1.24749 1.00164 0.98159 0.97878 1.69794 1.34803 1.22517 1.30319 0.86162 0.77458 0.77330 0.84637 1.21417 1.21673 1.21235 1.21605 0.97083 0.94490 0.85791 1.17091 0.84432 0.86001 0.79499 1.90676 1.23019 1.79324 1.48338 0.92606 0.92404 0.91868 0.89754 0.91935 0.91871 0.92495 0.88945 0.87636 0.81865 0.83037 0.83312 0.74196 0.91810 0.93280 0.91385 0.90766 0.92012 0.87597 0.97129 0.93916 0.94522 0.95491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.95 8.63 37.16 0.32 -0.63 16 2 C -0.11 -0.91 3.12 -90.62 -0.28 -1.19 16 3 C -0.14 -0.94 9.19 37.16 0.34 -0.59 16 4 C 0.09 0.68 4.83 -4.05 -0.02 0.66 16 5 N -0.49 -4.63 2.46 -119.34 -0.29 -4.92 16 6 C 0.15 0.97 8.20 -16.85 -0.14 0.83 16 7 C -0.24 -1.70 9.99 -40.01 -0.40 -2.10 16 8 C 0.05 0.57 9.70 -38.71 -0.38 0.20 16 9 C -0.26 -4.03 5.92 -104.50 -0.62 -4.64 16 10 C 0.57 11.16 7.01 -12.67 -0.09 11.07 16 11 O -0.55 -11.73 13.33 5.24 0.07 -11.66 16 12 N -0.69 -14.04 5.06 -46.95 -0.24 -14.28 16 13 C 0.16 3.27 0.82 -129.85 -0.11 3.17 16 14 C -0.15 -2.63 8.42 37.16 0.31 -2.31 16 15 C -0.15 -3.09 6.10 -24.44 -0.15 -3.23 16 16 C 0.15 4.12 5.87 -2.53 -0.01 4.10 16 17 N -0.60 -17.17 3.39 -170.08 -0.58 -17.75 16 18 C -0.21 -6.48 10.27 -15.06 -0.15 -6.64 16 19 H 0.08 2.22 7.83 -52.49 -0.41 1.80 16 20 C -0.01 -0.44 5.49 -17.43 -0.10 -0.54 16 21 N -0.92 -28.43 10.09 55.49 0.56 -27.87 16 22 Si 0.91 23.37 29.55 -169.99 -5.02 18.35 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 25 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 26 C 0.14 3.41 6.11 -3.07 -0.02 3.40 16 27 C 0.53 7.59 7.44 -14.92 -0.11 7.48 16 28 O -0.53 -9.27 13.26 5.02 0.07 -9.20 16 29 H 0.05 0.37 6.34 -51.93 -0.33 0.04 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 36 H 0.09 0.36 8.00 -51.93 -0.42 -0.05 16 37 H 0.11 0.94 7.38 -51.93 -0.38 0.56 16 38 H 0.16 0.34 7.88 -52.48 -0.41 -0.08 16 39 H 0.15 0.57 8.06 -52.48 -0.42 0.15 16 40 H 0.15 1.61 7.71 -52.49 -0.40 1.21 16 41 H 0.41 8.39 5.08 -40.82 -0.21 8.18 16 42 H 0.06 1.08 8.13 -51.93 -0.42 0.66 16 43 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.07 1.27 6.63 -51.93 -0.34 0.93 16 45 H 0.07 1.50 8.04 -51.93 -0.42 1.08 16 46 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 47 H 0.11 3.08 5.87 -51.93 -0.31 2.78 16 48 H 0.01 0.31 8.14 -51.93 -0.42 -0.12 16 49 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 50 H 0.04 0.99 6.32 -51.93 -0.33 0.66 16 51 H 0.03 0.67 7.82 -51.93 -0.41 0.27 16 LS Contribution 398.14 15.07 6.00 6.00 Total: -1.00 -37.27 398.14 -9.18 -46.45 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -8.14 Total: 5.85 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -1.60 Total: 9.02 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: -0.55 Total: -64.81 kcal Atomic # 8 Polarization: -21.00 SS G_CDS: 0.14 Total: -20.86 kcal Atomic # 14 Polarization: 23.37 SS G_CDS: -5.02 Total: 18.35 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -37.27 -9.18 -46.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046676933.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.549 kcal (2) G-P(sol) polarization free energy of solvation -37.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds