Wall clock time and date at job start Wed Apr 1 2020 05:31:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46460 * 2 1 4 4 C 1.52997 * 109.47429 * 120.00418 * 2 1 3 5 5 N 1.46491 * 109.46984 * 65.00314 * 4 2 1 6 6 C 1.35438 * 119.46923 * 270.01544 * 5 4 2 7 7 C 1.35767 * 121.22886 * 179.97438 * 6 5 4 8 8 C 1.39467 * 120.13212 * 359.79867 * 7 6 5 9 9 C 1.39338 * 118.95708 * 0.45216 * 8 7 6 10 10 C 1.47086 * 120.58397 * 179.80364 * 9 8 7 11 11 O 1.21639 * 120.00233 * 5.90457 * 10 9 8 12 12 N 1.34782 * 119.99809 * 185.90789 * 10 9 8 13 13 C 1.46499 * 119.99669 * 175.02061 * 12 10 9 14 14 C 1.53004 * 110.77852 * 298.21146 * 13 12 10 15 15 C 1.55408 * 110.69079 * 174.82711 * 13 12 10 16 16 C 1.54915 * 101.66032 * 277.04420 * 15 13 12 17 17 N 1.47420 * 104.83339 * 323.07716 * 16 15 13 18 18 C 1.36942 * 125.64710 * 204.09227 * 17 16 15 19 19 H 1.08001 * 119.99666 * 180.02562 * 18 17 16 20 20 C 1.38810 * 120.00144 * 0.04372 * 18 17 16 21 21 N 1.31622 * 119.99721 * 359.97438 * 20 18 17 22 22 Si 1.86794 * 120.00176 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47189 * 59.99949 * 22 20 18 24 24 H 1.48498 * 109.47141 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47231 * 299.99922 * 22 20 18 26 26 C 1.47018 * 108.70688 * 24.12972 * 17 16 15 27 27 C 1.34651 * 119.47394 * 90.00076 * 5 4 2 28 28 O 1.21885 * 120.10150 * 359.97438 * 27 5 4 29 29 H 1.09003 * 109.46902 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.47065 * 299.99119 * 1 2 3 31 31 H 1.08993 * 109.47592 * 59.99702 * 1 2 3 32 32 H 1.09003 * 109.46581 * 240.00922 * 2 1 3 33 33 H 1.09004 * 109.46715 * 179.97438 * 3 2 1 34 34 H 1.08993 * 109.47461 * 300.00378 * 3 2 1 35 35 H 1.09003 * 109.46971 * 60.01160 * 3 2 1 36 36 H 1.09003 * 109.47115 * 304.99821 * 4 2 1 37 37 H 1.09003 * 109.46989 * 185.00149 * 4 2 1 38 38 H 1.08003 * 119.38683 * 359.97438 * 6 5 4 39 39 H 1.08006 * 119.92933 * 180.02562 * 7 6 5 40 40 H 1.07995 * 120.51980 * 180.23880 * 8 7 6 41 41 H 0.96997 * 119.99695 * 355.01844 * 12 10 9 42 42 H 1.09001 * 109.46772 * 181.78731 * 14 13 12 43 43 H 1.08996 * 109.47199 * 301.78342 * 14 13 12 44 44 H 1.08997 * 109.47061 * 61.79308 * 14 13 12 45 45 H 1.09004 * 110.88948 * 158.98158 * 15 13 12 46 46 H 1.08995 * 111.07581 * 35.19071 * 15 13 12 47 47 H 1.09000 * 110.36438 * 204.23874 * 16 15 13 48 48 H 1.08997 * 110.36348 * 81.91904 * 16 15 13 49 49 H 0.96999 * 119.99741 * 179.97438 * 21 20 18 50 50 H 1.09005 * 109.88625 * 118.35067 * 26 17 16 51 51 H 1.08995 * 109.88590 * 239.36945 * 26 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7213 1.2491 5 7 1.6527 -2.1328 1.1903 6 6 0.4687 -2.5215 1.7210 7 6 0.0739 -3.8200 1.6858 8 6 0.8889 -4.7836 1.0922 9 6 2.1108 -4.3920 0.5489 10 6 3.0002 -5.3793 -0.0818 11 8 2.6270 -6.5276 -0.2291 12 7 4.2288 -5.0115 -0.4965 13 6 5.1549 -6.0164 -1.0244 14 6 5.4833 -7.0645 0.0408 15 6 6.4507 -5.3432 -1.5562 16 6 6.0157 -4.9053 -2.9770 17 7 5.1364 -5.9886 -3.4531 18 6 4.8853 -6.2947 -4.7640 19 1 4.2224 -7.1110 -5.0105 20 6 5.4830 -5.5562 -5.7760 21 7 6.2907 -4.5613 -5.4755 22 14 5.1400 -5.9733 -7.5642 23 1 3.6857 -5.8396 -7.8335 24 1 5.8932 -5.0428 -8.4428 25 1 5.5678 -7.3688 -7.8379 26 6 4.5730 -6.6853 -2.2875 27 6 2.4791 -3.0230 0.6093 28 8 3.5402 -2.6540 0.1366 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5137 -0.8901 33 1 3.1299 1.4426 0.0005 34 1 1.6765 1.9564 -0.8899 35 1 1.6766 1.9563 0.8901 36 1 1.6055 -0.2618 2.1369 37 1 3.1264 -0.6443 1.2950 38 1 -0.1733 -1.7847 2.1808 39 1 -0.8748 -4.1066 2.1150 40 1 0.5793 -5.8177 1.0572 41 1 4.4996 -4.0815 -0.4454 42 1 6.1970 -7.7823 -0.3637 43 1 5.9162 -6.5736 0.9123 44 1 4.5708 -7.5845 0.3324 45 1 7.2704 -6.0603 -1.6022 46 1 6.7225 -4.4808 -0.9476 47 1 6.8852 -4.8091 -3.6272 48 1 5.4681 -3.9640 -2.9327 49 1 6.7087 -4.0455 -6.1827 50 1 3.4869 -6.5922 -2.2892 51 1 4.8548 -7.7378 -2.3128 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001046676933.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:02 Heat of formation + Delta-G solvation = -33.613188 kcal Electronic energy + Delta-G solvation = -32105.599175 eV Core-core repulsion = 28005.294818 eV Total energy + Delta-G solvation = -4100.304357 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.70653 -41.01637 -38.88549 -38.36029 -37.22014 -35.66678 -34.37670 -33.50006 -31.82271 -30.92551 -30.35410 -28.21433 -27.92874 -27.58001 -26.04118 -25.22265 -23.85919 -22.51981 -22.11031 -21.28510 -20.55492 -19.22144 -18.78154 -18.41087 -17.87138 -17.09620 -17.07460 -16.85679 -16.65821 -15.95250 -15.74858 -15.58182 -15.52692 -15.32364 -14.93233 -14.75625 -14.26222 -14.07059 -13.91533 -13.63175 -13.57455 -13.46524 -13.33141 -13.20555 -13.09349 -13.04809 -12.85953 -12.77902 -12.76256 -12.28608 -12.16067 -12.08506 -12.01548 -11.94448 -11.72633 -11.71755 -11.60486 -11.08654 -10.98196 -10.78389 -10.72180 -9.91332 -9.08171 -8.92413 -7.80718 -5.25944 -0.54353 0.79369 1.40793 1.46093 1.47643 1.52633 1.78754 2.41318 2.46905 2.73836 3.27710 3.47410 3.58957 3.66552 3.69959 3.76987 3.86357 3.94573 3.97128 4.00788 4.12217 4.15111 4.22464 4.35352 4.58289 4.58716 4.60665 4.65912 4.76576 4.78033 4.80691 4.83928 4.90758 4.93322 4.97254 4.97720 4.99438 5.06403 5.21881 5.22181 5.29779 5.33836 5.36067 5.38292 5.52197 5.54539 5.72006 5.79683 5.90869 6.24889 6.65306 6.92760 7.06365 7.41422 7.72783 8.39060 9.21323 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.010429 B = 0.003395 C = 0.002939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2684.132218 B = 8246.291254 C = 9523.314426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.114 4.114 3 C -0.140 4.140 4 C 0.090 3.910 5 N -0.482 5.482 6 C 0.184 3.816 7 C -0.240 4.240 8 C 0.073 3.927 9 C -0.327 4.327 10 C 0.565 3.435 11 O -0.584 6.584 12 N -0.701 5.701 13 C 0.160 3.840 14 C -0.134 4.134 15 C -0.128 4.128 16 C 0.162 3.838 17 N -0.623 5.623 18 C -0.247 4.247 19 H 0.073 0.927 20 C -0.065 4.065 21 N -0.948 5.948 22 Si 0.986 3.014 23 H -0.282 1.282 24 H -0.286 1.286 25 H -0.273 1.273 26 C 0.139 3.861 27 C 0.519 3.481 28 O -0.582 6.582 29 H 0.051 0.949 30 H 0.096 0.904 31 H 0.053 0.947 32 H 0.031 0.969 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.148 0.852 37 H 0.082 0.918 38 H 0.228 0.772 39 H 0.199 0.801 40 H 0.147 0.853 41 H 0.410 0.590 42 H 0.075 0.925 43 H 0.072 0.928 44 H 0.058 0.942 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.080 0.920 48 H -0.025 1.025 49 H 0.249 0.751 50 H 0.009 0.991 51 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.534 12.279 23.872 31.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.134 4.134 3 C -0.198 4.198 4 C -0.030 4.030 5 N -0.187 5.187 6 C 0.054 3.946 7 C -0.262 4.262 8 C 0.050 3.950 9 C -0.335 4.335 10 C 0.355 3.645 11 O -0.468 6.468 12 N -0.361 5.361 13 C 0.073 3.927 14 C -0.193 4.193 15 C -0.167 4.167 16 C 0.037 3.963 17 N -0.349 5.349 18 C -0.376 4.376 19 H 0.091 0.909 20 C -0.257 4.257 21 N -0.597 5.597 22 Si 0.813 3.187 23 H -0.209 1.209 24 H -0.212 1.212 25 H -0.198 1.198 26 C 0.012 3.988 27 C 0.323 3.677 28 O -0.467 6.467 29 H 0.070 0.930 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.106 0.894 36 H 0.166 0.834 37 H 0.101 0.899 38 H 0.244 0.756 39 H 0.216 0.784 40 H 0.165 0.835 41 H 0.256 0.744 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.077 0.923 45 H 0.109 0.891 46 H 0.103 0.897 47 H 0.098 0.902 48 H -0.007 1.007 49 H 0.058 0.942 50 H 0.027 0.973 51 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -14.982 11.904 23.278 30.134 hybrid contribution 0.283 -0.020 -1.721 1.744 sum -14.699 11.884 21.557 28.670 Atomic orbital electron populations 1.21965 0.92705 1.02097 1.03928 1.21437 0.98043 0.97342 0.96560 1.21727 1.00821 0.93761 1.03476 1.22471 1.03052 0.76280 1.01235 1.45530 1.17073 1.10902 1.45211 1.23252 0.84379 0.98748 0.88224 1.21181 1.04585 0.90850 1.09536 1.22297 0.88042 1.02008 0.82692 1.20902 1.01762 0.93083 1.17706 1.18023 0.81570 0.87347 0.77559 1.90684 1.75682 1.21077 1.59321 1.46571 1.14159 1.13083 1.62255 1.21317 0.89436 0.89458 0.92457 1.21900 1.01983 0.97761 0.97628 1.23214 0.95768 1.00842 0.96884 1.21650 0.94605 0.87884 0.92113 1.44806 1.53329 1.35759 1.01011 1.19419 1.23139 1.12787 0.82270 0.90915 1.25682 0.99760 0.97885 1.02390 1.70050 1.35137 1.23059 1.31480 0.85049 0.77350 0.77580 0.78699 1.20850 1.21169 1.19849 1.21661 0.95490 0.94655 0.86947 1.17044 0.84538 0.86410 0.79738 1.90619 1.25257 1.79968 1.50890 0.92951 0.88571 0.92769 0.95002 0.93460 0.92389 0.89360 0.83447 0.89904 0.75555 0.78359 0.83495 0.74392 0.90594 0.90905 0.92331 0.89126 0.89740 0.90196 1.00674 0.94151 0.97341 0.95554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 8.63 71.98 0.62 -0.70 16 2 C -0.11 -1.67 3.12 -10.79 -0.03 -1.71 16 3 C -0.14 -1.65 9.19 71.98 0.66 -0.99 16 4 C 0.09 1.10 4.83 86.38 0.42 1.52 16 5 N -0.48 -8.07 2.46 -649.70 -1.60 -9.67 16 6 C 0.18 1.33 8.20 83.56 0.69 2.02 16 7 C -0.24 -2.29 9.99 21.99 0.22 -2.07 16 8 C 0.07 1.57 9.70 22.83 0.22 1.79 16 9 C -0.33 -10.42 5.92 -19.79 -0.12 -10.54 16 10 C 0.57 23.52 7.01 86.56 0.61 24.13 16 11 O -0.58 -26.58 13.33 -4.16 -0.06 -26.63 16 12 N -0.70 -30.41 5.06 -420.69 -2.13 -32.54 16 13 C 0.16 7.04 0.82 4.88 0.00 7.04 16 14 C -0.13 -4.86 8.42 71.98 0.61 -4.25 16 15 C -0.13 -5.63 6.10 32.08 0.20 -5.44 16 16 C 0.16 9.18 5.87 86.86 0.51 9.69 16 17 N -0.62 -37.48 3.39 -692.00 -2.35 -39.83 16 18 C -0.25 -15.70 10.27 84.03 0.86 -14.83 16 19 H 0.07 4.50 7.83 -2.91 -0.02 4.47 16 20 C -0.06 -4.00 5.49 84.86 0.47 -3.53 16 21 N -0.95 -60.64 10.09 21.65 0.22 -60.42 16 22 Si 0.99 49.26 29.55 68.60 2.03 51.29 16 23 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 24 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 25 H -0.27 -13.02 7.11 99.48 0.71 -12.31 16 26 C 0.14 7.34 6.11 86.73 0.53 7.87 16 27 C 0.52 15.42 7.44 85.17 0.63 16.06 16 28 O -0.58 -21.99 13.26 -4.94 -0.07 -22.06 16 29 H 0.05 0.49 6.34 -2.39 -0.02 0.48 16 30 H 0.10 0.15 8.14 -2.38 -0.02 0.13 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 34 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 35 H 0.09 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.15 0.24 8.00 -2.39 -0.02 0.22 16 37 H 0.08 1.47 7.38 -2.39 -0.02 1.45 16 38 H 0.23 -1.11 7.88 -2.91 -0.02 -1.14 16 39 H 0.20 0.14 8.06 -2.91 -0.02 0.11 16 40 H 0.15 3.12 7.71 -2.91 -0.02 3.10 16 41 H 0.41 18.08 5.08 -92.75 -0.47 17.61 16 42 H 0.08 2.52 8.13 -2.39 -0.02 2.51 16 43 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 44 H 0.06 2.24 6.63 -2.39 -0.02 2.22 16 45 H 0.09 3.67 8.04 -2.39 -0.02 3.65 16 46 H 0.08 3.31 8.04 -2.39 -0.02 3.29 16 47 H 0.08 4.93 5.87 -2.39 -0.01 4.92 16 48 H -0.02 -1.54 8.14 -2.39 -0.02 -1.56 16 49 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 50 H 0.01 0.50 6.32 -2.38 -0.02 0.48 16 51 H 0.03 1.38 7.82 -2.39 -0.02 1.36 16 Total: -1.00 -92.74 398.14 3.59 -89.15 By element: Atomic # 1 Polarization: 24.18 SS G_CDS: 0.46 Total: 24.64 kcal Atomic # 6 Polarization: 18.98 SS G_CDS: 7.09 Total: 26.07 kcal Atomic # 7 Polarization: -136.59 SS G_CDS: -5.86 Total: -142.45 kcal Atomic # 8 Polarization: -48.57 SS G_CDS: -0.12 Total: -48.69 kcal Atomic # 14 Polarization: 49.26 SS G_CDS: 2.03 Total: 51.29 kcal Total: -92.74 3.59 -89.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001046676933.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.536 kcal (2) G-P(sol) polarization free energy of solvation -92.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds