Wall clock time and date at job start Wed Apr 1 2020 05:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47026 * 2 1 4 4 C 1.52999 * 109.46818 * 119.99676 * 2 1 3 5 5 N 1.46499 * 109.47112 * 175.00151 * 4 2 1 6 6 C 1.35432 * 119.47177 * 90.00144 * 5 4 2 7 7 C 1.35755 * 121.23027 * 180.02562 * 6 5 4 8 8 C 1.39472 * 120.13101 * 359.97438 * 7 6 5 9 9 C 1.39334 * 118.96081 * 0.27512 * 8 7 6 10 10 C 1.47079 * 120.58795 * 179.72633 * 9 8 7 11 11 O 1.21643 * 120.00064 * 100.16181 * 10 9 8 12 12 N 1.34771 * 119.99909 * 280.16355 * 10 9 8 13 13 C 1.46502 * 119.99933 * 4.82661 * 12 10 9 14 14 C 1.46502 * 120.00473 * 184.83019 * 12 10 9 15 15 C 1.52999 * 109.47158 * 95.64673 * 14 12 10 16 16 H 1.09000 * 112.96574 * 66.56634 * 15 14 12 17 17 C 1.53951 * 113.77101 * 294.88959 * 15 14 12 18 18 C 1.53945 * 86.29055 * 222.09034 * 17 15 14 19 19 N 1.47579 * 113.77065 * 198.39366 * 15 14 12 20 20 C 1.36935 * 134.49333 * 318.94546 * 19 15 14 21 21 H 1.07997 * 120.00000 * 5.40481 * 20 19 15 22 22 C 1.38817 * 120.00095 * 185.40558 * 20 19 15 23 23 N 1.31619 * 119.99663 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00055 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47168 * 60.00093 * 24 22 20 26 26 H 1.48503 * 109.47194 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47006 * 299.99931 * 24 22 20 28 28 C 1.34657 * 119.46892 * 270.02349 * 5 4 2 29 29 O 1.21883 * 120.10728 * 359.97438 * 28 5 4 30 30 H 1.08997 * 109.47532 * 300.00421 * 1 2 3 31 31 H 1.09001 * 109.46728 * 60.00145 * 1 2 3 32 32 H 1.08993 * 109.47323 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46985 * 240.00113 * 2 1 3 34 34 H 1.08999 * 109.47382 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47249 * 299.99536 * 3 2 1 36 36 H 1.09006 * 109.47195 * 59.99399 * 3 2 1 37 37 H 1.09003 * 109.47010 * 55.00313 * 4 2 1 38 38 H 1.09004 * 109.47247 * 295.00311 * 4 2 1 39 39 H 1.07998 * 119.38452 * 0.02562 * 6 5 4 40 40 H 1.07999 * 119.93296 * 179.97438 * 7 6 5 41 41 H 1.07999 * 120.51887 * 180.02562 * 8 7 6 42 42 H 1.09005 * 109.47117 * 84.85981 * 13 12 10 43 43 H 1.09004 * 109.47506 * 204.84864 * 13 12 10 44 44 H 1.08999 * 109.47456 * 324.85750 * 13 12 10 45 45 H 1.08996 * 109.47725 * 215.65141 * 14 12 10 46 46 H 1.09003 * 109.46550 * 335.65581 * 14 12 10 47 47 H 1.08995 * 113.74102 * 336.43950 * 17 15 14 48 48 H 1.09005 * 113.73940 * 107.63945 * 17 15 14 49 49 H 1.08999 * 113.76766 * 137.90888 * 18 17 15 50 50 H 1.09001 * 113.76910 * 269.19175 * 18 17 15 51 51 H 0.97002 * 119.99700 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.2609 0.1602 1.7217 7 6 5.6167 0.0996 1.6867 8 6 6.2537 -0.9921 1.0971 9 6 5.4774 -2.0084 0.5441 10 6 6.1117 -3.1731 -0.0918 11 8 6.2076 -4.2216 0.5174 12 7 6.5868 -3.0786 -1.3495 13 6 6.5674 -1.7893 -2.0449 14 6 7.1224 -4.2652 -2.0213 15 6 6.0306 -4.8980 -2.8863 16 1 5.7335 -4.2679 -3.7246 17 6 4.8446 -5.4559 -2.0786 18 6 4.8938 -6.6644 -3.0310 19 7 6.3052 -6.2990 -3.2602 20 6 7.4214 -6.9846 -3.6594 21 1 8.3827 -6.4926 -3.6687 22 6 7.3171 -8.3120 -4.0520 23 7 6.1456 -8.9117 -4.0402 24 14 8.8396 -9.2469 -4.5973 25 1 9.8256 -9.2776 -3.4873 26 1 8.4627 -10.6358 -4.9637 27 1 9.4406 -8.5706 -5.7748 28 6 4.0639 -1.9021 0.6094 29 8 3.3625 -2.7799 0.1371 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6053 -1.7198 1.2952 38 1 1.7515 -0.1582 2.1370 39 1 3.7802 1.0110 2.1815 40 1 6.2031 0.8984 2.1161 41 1 7.3319 -1.0469 1.0662 42 1 7.4558 -1.2179 -1.7756 43 1 6.5563 -1.9574 -3.1218 44 1 5.6760 -1.2332 -1.7546 45 1 7.9639 -3.9772 -2.6515 46 1 7.4573 -4.9852 -1.2747 47 1 5.0932 -5.7005 -1.0460 48 1 3.9350 -4.8618 -2.1675 49 1 4.7641 -7.6239 -2.5303 50 1 4.2613 -6.5555 -3.9120 51 1 6.0728 -9.8393 -4.3142 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001085855458.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:36 Heat of formation + Delta-G solvation = 25.408589 kcal Electronic energy + Delta-G solvation = -31773.152351 eV Core-core repulsion = 27675.407370 eV Total energy + Delta-G solvation = -4097.744981 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.77189 -39.49514 -37.57309 -37.14705 -36.59444 -35.01083 -33.63995 -32.00182 -30.49110 -28.34857 -27.73719 -27.63788 -27.33568 -26.41181 -24.63177 -23.11377 -23.04984 -22.21507 -20.78844 -19.69496 -18.76816 -17.72933 -17.68295 -17.04999 -16.46128 -16.41353 -15.90216 -15.79089 -15.18345 -15.11808 -14.70568 -14.52567 -14.18856 -13.81787 -13.74089 -13.43227 -13.34840 -13.01242 -12.77085 -12.68362 -12.51643 -12.47452 -12.33489 -12.18201 -12.14278 -11.82498 -11.72429 -11.42866 -11.22572 -11.18918 -10.87611 -10.71949 -10.55702 -10.30364 -10.23985 -10.14187 -9.72306 -9.57117 -9.49244 -9.28457 -8.63412 -8.18246 -8.14887 -6.68946 -5.60985 -2.92260 0.37445 1.63755 2.18674 2.94445 3.19819 3.47710 3.48932 3.52764 3.54249 4.11904 4.20665 4.31053 4.50770 4.55886 4.58226 4.61677 4.76452 4.82129 4.98683 5.10541 5.12907 5.21806 5.27221 5.33029 5.40145 5.41329 5.47789 5.54199 5.61447 5.64365 5.68598 5.74581 5.76890 5.79816 5.85112 5.87885 6.08105 6.15215 6.19092 6.29436 6.61388 6.75443 6.77352 6.90756 6.96976 7.05498 7.45674 7.64441 7.75249 7.79255 7.86162 8.15180 8.50188 9.20162 9.86710 10.80182 11.56746 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.002669 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.245963 B =10487.992382 C =11314.172878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.113 4.113 3 C -0.153 4.153 4 C 0.093 3.907 5 N -0.491 5.491 6 C 0.146 3.854 7 C -0.236 4.236 8 C 0.014 3.986 9 C -0.241 4.241 10 C 0.584 3.416 11 O -0.518 6.518 12 N -0.602 5.602 13 C 0.085 3.915 14 C 0.116 3.884 15 C 0.128 3.872 16 H 0.039 0.961 17 C -0.153 4.153 18 C 0.165 3.835 19 N -0.600 5.600 20 C -0.221 4.221 21 H 0.077 0.923 22 C -0.009 4.009 23 N -0.920 5.920 24 Si 0.909 3.091 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C 0.530 3.470 29 O -0.519 6.519 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.092 0.908 39 H 0.162 0.838 40 H 0.149 0.851 41 H 0.138 0.862 42 H 0.052 0.948 43 H 0.075 0.925 44 H 0.060 0.940 45 H 0.067 0.933 46 H 0.094 0.906 47 H 0.081 0.919 48 H 0.045 0.955 49 H 0.064 0.936 50 H 0.024 0.976 51 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 29.357 12.741 32.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.132 4.132 3 C -0.210 4.210 4 C -0.029 4.029 5 N -0.201 5.201 6 C 0.017 3.983 7 C -0.260 4.260 8 C -0.008 4.008 9 C -0.249 4.249 10 C 0.370 3.630 11 O -0.393 6.393 12 N -0.335 5.335 13 C -0.059 4.059 14 C -0.007 4.007 15 C 0.020 3.980 16 H 0.057 0.943 17 C -0.191 4.191 18 C 0.040 3.960 19 N -0.326 5.326 20 C -0.349 4.349 21 H 0.095 0.905 22 C -0.205 4.205 23 N -0.567 5.567 24 Si 0.740 3.260 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.213 1.213 28 C 0.329 3.671 29 O -0.398 6.398 30 H 0.076 0.924 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.074 0.926 35 H 0.080 0.920 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.110 0.890 39 H 0.179 0.821 40 H 0.167 0.833 41 H 0.156 0.844 42 H 0.071 0.929 43 H 0.093 0.907 44 H 0.079 0.921 45 H 0.086 0.914 46 H 0.112 0.888 47 H 0.100 0.900 48 H 0.064 0.936 49 H 0.083 0.917 50 H 0.042 0.958 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -7.680 27.860 12.610 31.530 hybrid contribution 0.881 -0.261 -0.537 1.064 sum -6.799 27.599 12.074 30.882 Atomic orbital electron populations 1.21750 0.93604 1.02612 1.02207 1.21466 0.96888 0.96484 0.98363 1.21962 1.01141 0.95531 1.02380 1.22186 0.77196 1.04146 0.99333 1.45512 1.08905 1.18457 1.47210 1.22042 0.92511 0.91294 0.92417 1.20515 0.92919 1.02060 1.10483 1.21780 1.00525 0.89731 0.88792 1.21005 0.93172 0.99629 1.11092 1.17394 0.77726 0.86664 0.81252 1.90831 1.56055 1.29358 1.63012 1.47701 1.62003 1.10195 1.13608 1.21685 1.00940 0.84998 0.98239 1.21843 0.96281 0.85981 0.96573 1.22508 0.93187 0.88489 0.93816 0.94332 1.23734 0.96443 0.98898 1.00021 1.22104 0.84572 0.95919 0.93430 1.45968 1.05340 1.02166 1.79158 1.18948 0.85766 0.93205 1.36945 0.90501 1.24792 0.96752 0.97083 1.01891 1.69844 1.21956 1.11585 1.53334 0.86246 0.82219 0.79089 0.78485 1.21139 1.21664 1.21330 1.16740 0.88434 0.81620 0.80284 1.91011 1.63638 1.38048 1.47108 0.92424 0.91942 0.91954 0.89987 0.92553 0.91976 0.92394 0.87776 0.88987 0.82117 0.83309 0.84436 0.92929 0.90659 0.92109 0.91449 0.88753 0.90007 0.93609 0.91717 0.95792 0.93739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 9.19 37.16 0.34 -0.46 16 2 C -0.11 -0.75 3.13 -90.62 -0.28 -1.03 16 3 C -0.15 -0.71 8.63 37.16 0.32 -0.38 16 4 C 0.09 0.66 4.83 -4.04 -0.02 0.64 16 5 N -0.49 -4.45 2.46 -119.34 -0.29 -4.75 16 6 C 0.15 0.81 8.20 -16.85 -0.14 0.67 16 7 C -0.24 -1.38 9.99 -40.01 -0.40 -1.78 16 8 C 0.01 0.13 9.69 -38.71 -0.38 -0.24 16 9 C -0.24 -3.38 3.91 -104.51 -0.41 -3.79 16 10 C 0.58 10.63 6.20 -12.68 -0.08 10.55 16 11 O -0.52 -11.81 15.35 5.24 0.08 -11.73 16 12 N -0.60 -10.08 2.79 -182.98 -0.51 -10.59 16 13 C 0.09 1.01 10.08 59.85 0.60 1.62 16 14 C 0.12 2.33 5.41 -4.04 -0.02 2.31 16 15 C 0.13 2.94 4.58 -66.86 -0.31 2.64 16 16 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 17 C -0.15 -3.66 7.29 -25.80 -0.19 -3.85 16 18 C 0.16 4.47 7.39 -2.97 -0.02 4.45 16 19 N -0.60 -16.75 3.57 -170.73 -0.61 -17.36 16 20 C -0.22 -6.53 10.51 -15.06 -0.16 -6.69 16 21 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 22 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 23 N -0.92 -29.12 11.53 55.49 0.64 -28.48 16 24 Si 0.91 23.25 29.55 -169.99 -5.02 18.23 16 25 H -0.28 -7.17 7.11 56.52 0.40 -6.76 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 27 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 28 C 0.53 7.57 7.44 -14.91 -0.11 7.46 16 29 O -0.52 -9.73 16.11 5.02 0.08 -9.65 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.06 0.27 6.33 -51.93 -0.33 -0.06 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 37 H 0.10 0.97 7.38 -51.93 -0.38 0.59 16 38 H 0.09 0.35 8.00 -51.93 -0.42 -0.06 16 39 H 0.16 0.24 7.88 -52.49 -0.41 -0.17 16 40 H 0.15 0.40 8.06 -52.49 -0.42 -0.02 16 41 H 0.14 1.06 8.06 -52.49 -0.42 0.64 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 43 H 0.07 0.87 8.03 -51.93 -0.42 0.45 16 44 H 0.06 0.68 7.00 -51.93 -0.36 0.31 16 45 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 46 H 0.09 2.19 7.20 -51.93 -0.37 1.81 16 47 H 0.08 2.13 6.84 -51.93 -0.36 1.77 16 48 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 49 H 0.06 1.91 7.41 -51.93 -0.38 1.52 16 50 H 0.02 0.66 8.14 -51.93 -0.42 0.23 16 51 H 0.25 7.73 8.31 -40.82 -0.34 7.39 16 LS Contribution 412.52 15.07 6.22 6.22 Total: -1.00 -39.93 412.52 -9.24 -49.17 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -8.48 Total: -2.81 kcal Atomic # 6 Polarization: 13.09 SS G_CDS: -1.34 Total: 11.75 kcal Atomic # 7 Polarization: -60.40 SS G_CDS: -0.77 Total: -61.18 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: 0.16 Total: -21.38 kcal Atomic # 14 Polarization: 23.25 SS G_CDS: -5.02 Total: 18.23 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -39.93 -9.24 -49.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085855458.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.578 kcal (2) G-P(sol) polarization free energy of solvation -39.933 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.645 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds