Wall clock time and date at job start Wed Apr 1 2020 05:31:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52998 * 109.47026 * 2 1 4 4 C 1.52999 * 109.46818 * 119.99676 * 2 1 3 5 5 N 1.46499 * 109.47112 * 175.00151 * 4 2 1 6 6 C 1.35432 * 119.47177 * 90.00144 * 5 4 2 7 7 C 1.35755 * 121.23027 * 180.02562 * 6 5 4 8 8 C 1.39472 * 120.13101 * 359.97438 * 7 6 5 9 9 C 1.39334 * 118.96081 * 0.27512 * 8 7 6 10 10 C 1.47079 * 120.58795 * 179.72633 * 9 8 7 11 11 O 1.21643 * 120.00064 * 100.16181 * 10 9 8 12 12 N 1.34771 * 119.99909 * 280.16355 * 10 9 8 13 13 C 1.46502 * 119.99933 * 4.82661 * 12 10 9 14 14 C 1.46502 * 120.00473 * 184.83019 * 12 10 9 15 15 C 1.52999 * 109.47158 * 95.64673 * 14 12 10 16 16 H 1.09000 * 112.96574 * 66.56634 * 15 14 12 17 17 C 1.53951 * 113.77101 * 294.88959 * 15 14 12 18 18 C 1.53945 * 86.29055 * 222.09034 * 17 15 14 19 19 N 1.47579 * 113.77065 * 198.39366 * 15 14 12 20 20 C 1.36935 * 134.49333 * 318.94546 * 19 15 14 21 21 H 1.07997 * 120.00000 * 5.40481 * 20 19 15 22 22 C 1.38817 * 120.00095 * 185.40558 * 20 19 15 23 23 N 1.31619 * 119.99663 * 359.97438 * 22 20 19 24 24 Si 1.86795 * 120.00055 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47168 * 60.00093 * 24 22 20 26 26 H 1.48503 * 109.47194 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47006 * 299.99931 * 24 22 20 28 28 C 1.34657 * 119.46892 * 270.02349 * 5 4 2 29 29 O 1.21883 * 120.10728 * 359.97438 * 28 5 4 30 30 H 1.08997 * 109.47532 * 300.00421 * 1 2 3 31 31 H 1.09001 * 109.46728 * 60.00145 * 1 2 3 32 32 H 1.08993 * 109.47323 * 179.97438 * 1 2 3 33 33 H 1.08997 * 109.46985 * 240.00113 * 2 1 3 34 34 H 1.08999 * 109.47382 * 179.97438 * 3 2 1 35 35 H 1.09001 * 109.47249 * 299.99536 * 3 2 1 36 36 H 1.09006 * 109.47195 * 59.99399 * 3 2 1 37 37 H 1.09003 * 109.47010 * 55.00313 * 4 2 1 38 38 H 1.09004 * 109.47247 * 295.00311 * 4 2 1 39 39 H 1.07998 * 119.38452 * 0.02562 * 6 5 4 40 40 H 1.07999 * 119.93296 * 179.97438 * 7 6 5 41 41 H 1.07999 * 120.51887 * 180.02562 * 8 7 6 42 42 H 1.09005 * 109.47117 * 84.85981 * 13 12 10 43 43 H 1.09004 * 109.47506 * 204.84864 * 13 12 10 44 44 H 1.08999 * 109.47456 * 324.85750 * 13 12 10 45 45 H 1.08996 * 109.47725 * 215.65141 * 14 12 10 46 46 H 1.09003 * 109.46550 * 335.65581 * 14 12 10 47 47 H 1.08995 * 113.74102 * 336.43950 * 17 15 14 48 48 H 1.09005 * 113.73940 * 107.63945 * 17 15 14 49 49 H 1.08999 * 113.76766 * 137.90888 * 18 17 15 50 50 H 1.09001 * 113.76910 * 269.19175 * 18 17 15 51 51 H 0.97002 * 119.99700 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 3.5000 -0.8263 1.1907 6 6 4.2609 0.1602 1.7217 7 6 5.6167 0.0996 1.6867 8 6 6.2537 -0.9921 1.0971 9 6 5.4774 -2.0084 0.5441 10 6 6.1117 -3.1731 -0.0918 11 8 6.2076 -4.2216 0.5174 12 7 6.5868 -3.0786 -1.3495 13 6 6.5674 -1.7893 -2.0449 14 6 7.1224 -4.2652 -2.0213 15 6 6.0306 -4.8980 -2.8863 16 1 5.7335 -4.2679 -3.7246 17 6 4.8446 -5.4559 -2.0786 18 6 4.8938 -6.6644 -3.0310 19 7 6.3052 -6.2990 -3.2602 20 6 7.4214 -6.9846 -3.6594 21 1 8.3827 -6.4926 -3.6687 22 6 7.3171 -8.3120 -4.0520 23 7 6.1456 -8.9117 -4.0402 24 14 8.8396 -9.2469 -4.5973 25 1 9.8256 -9.2776 -3.4873 26 1 8.4627 -10.6358 -4.9637 27 1 9.4406 -8.5706 -5.7748 28 6 4.0639 -1.9021 0.6094 29 8 3.3625 -2.7799 0.1371 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1300 1.4426 0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.6053 -1.7198 1.2952 38 1 1.7515 -0.1582 2.1370 39 1 3.7802 1.0110 2.1815 40 1 6.2031 0.8984 2.1161 41 1 7.3319 -1.0469 1.0662 42 1 7.4558 -1.2179 -1.7756 43 1 6.5563 -1.9574 -3.1218 44 1 5.6760 -1.2332 -1.7546 45 1 7.9639 -3.9772 -2.6515 46 1 7.4573 -4.9852 -1.2747 47 1 5.0932 -5.7005 -1.0460 48 1 3.9350 -4.8618 -2.1675 49 1 4.7641 -7.6239 -2.5303 50 1 4.2613 -6.5555 -3.9120 51 1 6.0728 -9.8393 -4.3142 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085855458.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:35 Heat of formation + Delta-G solvation = -2.198613 kcal Electronic energy + Delta-G solvation = -31774.349489 eV Core-core repulsion = 27675.407370 eV Total energy + Delta-G solvation = -4098.942119 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -42.59360 -40.90030 -39.43196 -38.13084 -37.23625 -36.45032 -34.42351 -34.17296 -31.40333 -29.90225 -29.78542 -28.17651 -27.91450 -27.53871 -25.72984 -25.28498 -23.92017 -23.77259 -21.36800 -21.07135 -20.65492 -18.83270 -18.57297 -18.45286 -17.93293 -17.49720 -17.10089 -16.75949 -16.68609 -16.35213 -15.84770 -15.75977 -15.47250 -15.14788 -14.96955 -14.80257 -14.24368 -14.01102 -13.91983 -13.84877 -13.50116 -13.40607 -13.32697 -13.17154 -13.11174 -13.04521 -12.93529 -12.73202 -12.60093 -12.55642 -12.34762 -12.24280 -11.91797 -11.85556 -11.68462 -11.66748 -11.32599 -11.23565 -10.99562 -10.87072 -10.77407 -9.67607 -8.94908 -8.92908 -7.90426 -5.25113 -0.33052 0.91154 1.27647 1.42446 1.48503 1.54022 1.83684 2.04577 2.48309 2.58463 3.27190 3.36884 3.56278 3.65704 3.76934 3.82897 3.88116 3.91450 4.02734 4.13305 4.19411 4.25302 4.26954 4.29395 4.38630 4.44110 4.59427 4.62332 4.69872 4.73412 4.77530 4.81332 4.84448 4.87636 4.96689 4.99830 5.00446 5.01925 5.05171 5.16538 5.23949 5.26098 5.38710 5.40325 5.44373 5.50842 5.61964 5.65639 5.89486 6.03236 6.41186 6.88379 6.97424 7.18263 7.59171 8.56525 9.28064 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.017805 B = 0.002669 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.245963 B =10487.992382 C =11314.172878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.109 4.109 3 C -0.147 4.147 4 C 0.089 3.911 5 N -0.483 5.483 6 C 0.166 3.834 7 C -0.231 4.231 8 C 0.048 3.952 9 C -0.303 4.303 10 C 0.581 3.419 11 O -0.584 6.584 12 N -0.601 5.601 13 C 0.082 3.918 14 C 0.130 3.870 15 C 0.138 3.862 16 H 0.058 0.942 17 C -0.129 4.129 18 C 0.164 3.836 19 N -0.624 5.624 20 C -0.233 4.233 21 H 0.091 0.909 22 C -0.075 4.075 23 N -0.960 5.960 24 Si 0.986 3.014 25 H -0.276 1.276 26 H -0.295 1.295 27 H -0.270 1.270 28 C 0.518 3.482 29 O -0.593 6.593 30 H 0.083 0.917 31 H 0.063 0.937 32 H 0.041 0.959 33 H 0.039 0.961 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.069 0.931 38 H 0.141 0.859 39 H 0.221 0.779 40 H 0.199 0.801 41 H 0.155 0.845 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.068 0.932 45 H 0.092 0.908 46 H 0.056 0.944 47 H 0.056 0.944 48 H 0.054 0.946 49 H 0.030 0.970 50 H 0.021 0.979 51 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.007 35.113 14.197 38.348 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.129 4.129 3 C -0.204 4.204 4 C -0.032 4.032 5 N -0.190 5.190 6 C 0.037 3.963 7 C -0.253 4.253 8 C 0.025 3.975 9 C -0.311 4.311 10 C 0.369 3.631 11 O -0.464 6.464 12 N -0.333 5.333 13 C -0.060 4.060 14 C 0.006 3.994 15 C 0.031 3.969 16 H 0.075 0.925 17 C -0.167 4.167 18 C 0.039 3.961 19 N -0.351 5.351 20 C -0.360 4.360 21 H 0.109 0.891 22 C -0.267 4.267 23 N -0.609 5.609 24 Si 0.813 3.187 25 H -0.202 1.202 26 H -0.222 1.222 27 H -0.196 1.196 28 C 0.321 3.679 29 O -0.478 6.478 30 H 0.102 0.898 31 H 0.082 0.918 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.159 0.841 39 H 0.237 0.763 40 H 0.216 0.784 41 H 0.173 0.827 42 H 0.107 0.893 43 H 0.098 0.902 44 H 0.087 0.913 45 H 0.110 0.890 46 H 0.074 0.926 47 H 0.074 0.926 48 H 0.073 0.927 49 H 0.048 0.952 50 H 0.039 0.961 51 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -6.280 33.747 14.072 37.098 hybrid contribution 0.380 -1.822 -0.861 2.050 sum -5.900 31.925 13.210 35.050 Atomic orbital electron populations 1.21743 0.92930 1.01784 1.03523 1.21400 0.97454 0.97745 0.96278 1.21941 1.01201 0.93468 1.03817 1.22399 0.75939 1.03243 1.01578 1.45534 1.10075 1.17727 1.45663 1.23119 0.92809 0.90840 0.89482 1.21091 0.93333 1.01657 1.09174 1.22173 1.01261 0.88628 0.85417 1.20512 0.93378 1.00744 1.16430 1.18152 0.76510 0.87225 0.81175 1.90771 1.58428 1.32420 1.64741 1.47781 1.61312 1.10691 1.13530 1.21961 1.03077 0.82940 0.97996 1.21393 0.95804 0.86863 0.95349 1.22618 0.93303 0.86943 0.94060 0.92501 1.23393 0.97625 0.97672 0.98019 1.21977 0.85122 0.95356 0.93669 1.46243 1.05039 1.04483 1.79336 1.19448 0.86831 0.93798 1.35972 0.89107 1.25789 1.00172 0.98189 1.02552 1.70068 1.24475 1.11544 1.54796 0.85052 0.78179 0.77041 0.78453 1.20236 1.22169 1.19561 1.16874 0.88461 0.82217 0.80388 1.90957 1.64954 1.40977 1.50946 0.89840 0.91808 0.93944 0.94256 0.92314 0.92265 0.89316 0.91193 0.84112 0.76288 0.78420 0.82748 0.89330 0.90203 0.91309 0.89017 0.92587 0.92552 0.92719 0.95171 0.96088 0.94348 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.43 9.19 71.98 0.66 -0.77 16 2 C -0.11 -1.32 3.13 -10.79 -0.03 -1.35 16 3 C -0.15 -0.75 8.63 71.98 0.62 -0.13 16 4 C 0.09 1.12 4.83 86.38 0.42 1.54 16 5 N -0.48 -7.75 2.46 -649.69 -1.60 -9.35 16 6 C 0.17 0.89 8.20 83.56 0.69 1.57 16 7 C -0.23 -1.30 9.99 21.99 0.22 -1.08 16 8 C 0.05 0.74 9.69 22.83 0.22 0.96 16 9 C -0.30 -8.53 3.91 -19.79 -0.08 -8.61 16 10 C 0.58 22.27 6.20 86.56 0.54 22.81 16 11 O -0.58 -29.02 15.35 -4.17 -0.06 -29.08 16 12 N -0.60 -20.52 2.79 -851.05 -2.37 -22.90 16 13 C 0.08 1.82 10.08 127.77 1.29 3.10 16 14 C 0.13 5.38 5.41 86.38 0.47 5.85 16 15 C 0.14 6.56 4.58 45.09 0.21 6.76 16 16 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 17 C -0.13 -6.64 7.29 31.26 0.23 -6.42 16 18 C 0.16 9.55 7.39 86.48 0.64 10.19 16 19 N -0.62 -36.38 3.57 -694.08 -2.48 -38.85 16 20 C -0.23 -14.11 10.51 84.03 0.88 -13.22 16 21 H 0.09 5.11 7.83 -2.91 -0.02 5.09 16 22 C -0.07 -4.61 5.50 84.86 0.47 -4.15 16 23 N -0.96 -63.47 11.53 21.65 0.25 -63.22 16 24 Si 0.99 48.87 29.55 68.60 2.03 50.89 16 25 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 26 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 27 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 28 C 0.52 15.28 7.44 85.17 0.63 15.91 16 29 O -0.59 -24.47 16.11 -4.94 -0.08 -24.55 16 30 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16 33 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 34 H 0.06 0.27 6.33 -2.39 -0.02 0.26 16 35 H 0.06 0.37 8.14 -2.39 -0.02 0.36 16 36 H 0.09 -0.04 8.14 -2.38 -0.02 -0.06 16 37 H 0.07 1.41 7.38 -2.39 -0.02 1.39 16 38 H 0.14 0.39 8.00 -2.38 -0.02 0.37 16 39 H 0.22 -1.30 7.88 -2.91 -0.02 -1.32 16 40 H 0.20 -0.64 8.06 -2.91 -0.02 -0.67 16 41 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16 42 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16 43 H 0.08 1.70 8.03 -2.39 -0.02 1.68 16 44 H 0.07 1.45 7.00 -2.39 -0.02 1.43 16 45 H 0.09 3.30 8.11 -2.39 -0.02 3.28 16 46 H 0.06 2.76 7.20 -2.39 -0.02 2.74 16 47 H 0.06 3.21 6.84 -2.39 -0.02 3.20 16 48 H 0.05 2.69 8.14 -2.38 -0.02 2.67 16 49 H 0.03 1.93 7.41 -2.39 -0.02 1.91 16 50 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16 51 H 0.25 15.84 8.31 -92.71 -0.77 15.06 16 Total: -1.00 -100.57 412.52 4.65 -95.92 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 0.90 Total: 8.17 kcal Atomic # 6 Polarization: 24.90 SS G_CDS: 8.06 Total: 32.97 kcal Atomic # 7 Polarization: -128.11 SS G_CDS: -6.20 Total: -134.32 kcal Atomic # 8 Polarization: -53.49 SS G_CDS: -0.14 Total: -53.63 kcal Atomic # 14 Polarization: 48.87 SS G_CDS: 2.03 Total: 50.89 kcal Total: -100.57 4.65 -95.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085855458.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.724 kcal (2) G-P(sol) polarization free energy of solvation -100.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds