Wall clock time and date at job start Wed Apr 1 2020 05:31:35
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53005 * 1
3 3 C 1.52998 * 109.47026 * 2 1
4 4 C 1.52999 * 109.46818 * 119.99676 * 2 1 3
5 5 N 1.46499 * 109.47112 * 175.00151 * 4 2 1
6 6 C 1.35432 * 119.47177 * 90.00144 * 5 4 2
7 7 C 1.35755 * 121.23027 * 180.02562 * 6 5 4
8 8 C 1.39472 * 120.13101 * 359.97438 * 7 6 5
9 9 C 1.39334 * 118.96081 * 0.27512 * 8 7 6
10 10 C 1.47079 * 120.58795 * 179.72633 * 9 8 7
11 11 O 1.21643 * 120.00064 * 100.16181 * 10 9 8
12 12 N 1.34771 * 119.99909 * 280.16355 * 10 9 8
13 13 C 1.46502 * 119.99933 * 4.82661 * 12 10 9
14 14 C 1.46502 * 120.00473 * 184.83019 * 12 10 9
15 15 C 1.52999 * 109.47158 * 95.64673 * 14 12 10
16 16 H 1.09000 * 112.96574 * 66.56634 * 15 14 12
17 17 C 1.53951 * 113.77101 * 294.88959 * 15 14 12
18 18 C 1.53945 * 86.29055 * 222.09034 * 17 15 14
19 19 N 1.47579 * 113.77065 * 198.39366 * 15 14 12
20 20 C 1.36935 * 134.49333 * 318.94546 * 19 15 14
21 21 H 1.07997 * 120.00000 * 5.40481 * 20 19 15
22 22 C 1.38817 * 120.00095 * 185.40558 * 20 19 15
23 23 N 1.31619 * 119.99663 * 359.97438 * 22 20 19
24 24 Si 1.86795 * 120.00055 * 179.97438 * 22 20 19
25 25 H 1.48498 * 109.47168 * 60.00093 * 24 22 20
26 26 H 1.48503 * 109.47194 * 180.02562 * 24 22 20
27 27 H 1.48506 * 109.47006 * 299.99931 * 24 22 20
28 28 C 1.34657 * 119.46892 * 270.02349 * 5 4 2
29 29 O 1.21883 * 120.10728 * 359.97438 * 28 5 4
30 30 H 1.08997 * 109.47532 * 300.00421 * 1 2 3
31 31 H 1.09001 * 109.46728 * 60.00145 * 1 2 3
32 32 H 1.08993 * 109.47323 * 179.97438 * 1 2 3
33 33 H 1.08997 * 109.46985 * 240.00113 * 2 1 3
34 34 H 1.08999 * 109.47382 * 179.97438 * 3 2 1
35 35 H 1.09001 * 109.47249 * 299.99536 * 3 2 1
36 36 H 1.09006 * 109.47195 * 59.99399 * 3 2 1
37 37 H 1.09003 * 109.47010 * 55.00313 * 4 2 1
38 38 H 1.09004 * 109.47247 * 295.00311 * 4 2 1
39 39 H 1.07998 * 119.38452 * 0.02562 * 6 5 4
40 40 H 1.07999 * 119.93296 * 179.97438 * 7 6 5
41 41 H 1.07999 * 120.51887 * 180.02562 * 8 7 6
42 42 H 1.09005 * 109.47117 * 84.85981 * 13 12 10
43 43 H 1.09004 * 109.47506 * 204.84864 * 13 12 10
44 44 H 1.08999 * 109.47456 * 324.85750 * 13 12 10
45 45 H 1.08996 * 109.47725 * 215.65141 * 14 12 10
46 46 H 1.09003 * 109.46550 * 335.65581 * 14 12 10
47 47 H 1.08995 * 113.74102 * 336.43950 * 17 15 14
48 48 H 1.09005 * 113.73940 * 107.63945 * 17 15 14
49 49 H 1.08999 * 113.76766 * 137.90888 * 18 17 15
50 50 H 1.09001 * 113.76910 * 269.19175 * 18 17 15
51 51 H 0.97002 * 119.99700 * 180.02562 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5301 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0400 -0.7212 1.2493
5 7 3.5000 -0.8263 1.1907
6 6 4.2609 0.1602 1.7217
7 6 5.6167 0.0996 1.6867
8 6 6.2537 -0.9921 1.0971
9 6 5.4774 -2.0084 0.5441
10 6 6.1117 -3.1731 -0.0918
11 8 6.2076 -4.2216 0.5174
12 7 6.5868 -3.0786 -1.3495
13 6 6.5674 -1.7893 -2.0449
14 6 7.1224 -4.2652 -2.0213
15 6 6.0306 -4.8980 -2.8863
16 1 5.7335 -4.2679 -3.7246
17 6 4.8446 -5.4559 -2.0786
18 6 4.8938 -6.6644 -3.0310
19 7 6.3052 -6.2990 -3.2602
20 6 7.4214 -6.9846 -3.6594
21 1 8.3827 -6.4926 -3.6687
22 6 7.3171 -8.3120 -4.0520
23 7 6.1456 -8.9117 -4.0402
24 14 8.8396 -9.2469 -4.5973
25 1 9.8256 -9.2776 -3.4873
26 1 8.4627 -10.6358 -4.9637
27 1 9.4406 -8.5706 -5.7748
28 6 4.0639 -1.9021 0.6094
29 8 3.3625 -2.7799 0.1371
30 1 -0.3634 0.5139 0.8899
31 1 -0.3633 0.5138 -0.8900
32 1 -0.3633 -1.0276 -0.0005
33 1 1.8933 -0.5138 -0.8900
34 1 3.1300 1.4426 0.0005
35 1 1.6768 1.9563 -0.8900
36 1 1.6766 1.9564 0.8900
37 1 1.6053 -1.7198 1.2952
38 1 1.7515 -0.1582 2.1370
39 1 3.7802 1.0110 2.1815
40 1 6.2031 0.8984 2.1161
41 1 7.3319 -1.0469 1.0662
42 1 7.4558 -1.2179 -1.7756
43 1 6.5563 -1.9574 -3.1218
44 1 5.6760 -1.2332 -1.7546
45 1 7.9639 -3.9772 -2.6515
46 1 7.4573 -4.9852 -1.2747
47 1 5.0932 -5.7005 -1.0460
48 1 3.9350 -4.8618 -2.1675
49 1 4.7641 -7.6239 -2.5303
50 1 4.2613 -6.5555 -3.9120
51 1 6.0728 -9.8393 -4.3142
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001085855458.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:31:35
Heat of formation + Delta-G solvation = -2.198613 kcal
Electronic energy + Delta-G solvation = -31774.349489 eV
Core-core repulsion = 27675.407370 eV
Total energy + Delta-G solvation = -4098.942119 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 1.06 seconds
Orbital eigenvalues (eV)
-42.59360 -40.90030 -39.43196 -38.13084 -37.23625 -36.45032 -34.42351 -34.17296
-31.40333 -29.90225 -29.78542 -28.17651 -27.91450 -27.53871 -25.72984 -25.28498
-23.92017 -23.77259 -21.36800 -21.07135 -20.65492 -18.83270 -18.57297 -18.45286
-17.93293 -17.49720 -17.10089 -16.75949 -16.68609 -16.35213 -15.84770 -15.75977
-15.47250 -15.14788 -14.96955 -14.80257 -14.24368 -14.01102 -13.91983 -13.84877
-13.50116 -13.40607 -13.32697 -13.17154 -13.11174 -13.04521 -12.93529 -12.73202
-12.60093 -12.55642 -12.34762 -12.24280 -11.91797 -11.85556 -11.68462 -11.66748
-11.32599 -11.23565 -10.99562 -10.87072 -10.77407 -9.67607 -8.94908 -8.92908
-7.90426 -5.25113 -0.33052 0.91154 1.27647 1.42446 1.48503 1.54022
1.83684 2.04577 2.48309 2.58463 3.27190 3.36884 3.56278 3.65704
3.76934 3.82897 3.88116 3.91450 4.02734 4.13305 4.19411 4.25302
4.26954 4.29395 4.38630 4.44110 4.59427 4.62332 4.69872 4.73412
4.77530 4.81332 4.84448 4.87636 4.96689 4.99830 5.00446 5.01925
5.05171 5.16538 5.23949 5.26098 5.38710 5.40325 5.44373 5.50842
5.61964 5.65639 5.89486 6.03236 6.41186 6.88379 6.97424 7.18263
7.59171 8.56525 9.28064
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.017805 B = 0.002669 C = 0.002474
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1572.245963 B =10487.992382 C =11314.172878
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.142 4.142
2 C -0.109 4.109
3 C -0.147 4.147
4 C 0.089 3.911
5 N -0.483 5.483
6 C 0.166 3.834
7 C -0.231 4.231
8 C 0.048 3.952
9 C -0.303 4.303
10 C 0.581 3.419
11 O -0.584 6.584
12 N -0.601 5.601
13 C 0.082 3.918
14 C 0.130 3.870
15 C 0.138 3.862
16 H 0.058 0.942
17 C -0.129 4.129
18 C 0.164 3.836
19 N -0.624 5.624
20 C -0.233 4.233
21 H 0.091 0.909
22 C -0.075 4.075
23 N -0.960 5.960
24 Si 0.986 3.014
25 H -0.276 1.276
26 H -0.295 1.295
27 H -0.270 1.270
28 C 0.518 3.482
29 O -0.593 6.593
30 H 0.083 0.917
31 H 0.063 0.937
32 H 0.041 0.959
33 H 0.039 0.961
34 H 0.058 0.942
35 H 0.058 0.942
36 H 0.088 0.912
37 H 0.069 0.931
38 H 0.141 0.859
39 H 0.221 0.779
40 H 0.199 0.801
41 H 0.155 0.845
42 H 0.088 0.912
43 H 0.079 0.921
44 H 0.068 0.932
45 H 0.092 0.908
46 H 0.056 0.944
47 H 0.056 0.944
48 H 0.054 0.946
49 H 0.030 0.970
50 H 0.021 0.979
51 H 0.248 0.752
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.007 35.113 14.197 38.348
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.200 4.200
2 C -0.129 4.129
3 C -0.204 4.204
4 C -0.032 4.032
5 N -0.190 5.190
6 C 0.037 3.963
7 C -0.253 4.253
8 C 0.025 3.975
9 C -0.311 4.311
10 C 0.369 3.631
11 O -0.464 6.464
12 N -0.333 5.333
13 C -0.060 4.060
14 C 0.006 3.994
15 C 0.031 3.969
16 H 0.075 0.925
17 C -0.167 4.167
18 C 0.039 3.961
19 N -0.351 5.351
20 C -0.360 4.360
21 H 0.109 0.891
22 C -0.267 4.267
23 N -0.609 5.609
24 Si 0.813 3.187
25 H -0.202 1.202
26 H -0.222 1.222
27 H -0.196 1.196
28 C 0.321 3.679
29 O -0.478 6.478
30 H 0.102 0.898
31 H 0.082 0.918
32 H 0.061 0.939
33 H 0.057 0.943
34 H 0.077 0.923
35 H 0.077 0.923
36 H 0.107 0.893
37 H 0.088 0.912
38 H 0.159 0.841
39 H 0.237 0.763
40 H 0.216 0.784
41 H 0.173 0.827
42 H 0.107 0.893
43 H 0.098 0.902
44 H 0.087 0.913
45 H 0.110 0.890
46 H 0.074 0.926
47 H 0.074 0.926
48 H 0.073 0.927
49 H 0.048 0.952
50 H 0.039 0.961
51 H 0.057 0.943
Dipole moment (debyes) X Y Z Total
from point charges -6.280 33.747 14.072 37.098
hybrid contribution 0.380 -1.822 -0.861 2.050
sum -5.900 31.925 13.210 35.050
Atomic orbital electron populations
1.21743 0.92930 1.01784 1.03523 1.21400 0.97454 0.97745 0.96278
1.21941 1.01201 0.93468 1.03817 1.22399 0.75939 1.03243 1.01578
1.45534 1.10075 1.17727 1.45663 1.23119 0.92809 0.90840 0.89482
1.21091 0.93333 1.01657 1.09174 1.22173 1.01261 0.88628 0.85417
1.20512 0.93378 1.00744 1.16430 1.18152 0.76510 0.87225 0.81175
1.90771 1.58428 1.32420 1.64741 1.47781 1.61312 1.10691 1.13530
1.21961 1.03077 0.82940 0.97996 1.21393 0.95804 0.86863 0.95349
1.22618 0.93303 0.86943 0.94060 0.92501 1.23393 0.97625 0.97672
0.98019 1.21977 0.85122 0.95356 0.93669 1.46243 1.05039 1.04483
1.79336 1.19448 0.86831 0.93798 1.35972 0.89107 1.25789 1.00172
0.98189 1.02552 1.70068 1.24475 1.11544 1.54796 0.85052 0.78179
0.77041 0.78453 1.20236 1.22169 1.19561 1.16874 0.88461 0.82217
0.80388 1.90957 1.64954 1.40977 1.50946 0.89840 0.91808 0.93944
0.94256 0.92314 0.92265 0.89316 0.91193 0.84112 0.76288 0.78420
0.82748 0.89330 0.90203 0.91309 0.89017 0.92587 0.92552 0.92719
0.95171 0.96088 0.94348
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.43 9.19 71.98 0.66 -0.77 16
2 C -0.11 -1.32 3.13 -10.79 -0.03 -1.35 16
3 C -0.15 -0.75 8.63 71.98 0.62 -0.13 16
4 C 0.09 1.12 4.83 86.38 0.42 1.54 16
5 N -0.48 -7.75 2.46 -649.69 -1.60 -9.35 16
6 C 0.17 0.89 8.20 83.56 0.69 1.57 16
7 C -0.23 -1.30 9.99 21.99 0.22 -1.08 16
8 C 0.05 0.74 9.69 22.83 0.22 0.96 16
9 C -0.30 -8.53 3.91 -19.79 -0.08 -8.61 16
10 C 0.58 22.27 6.20 86.56 0.54 22.81 16
11 O -0.58 -29.02 15.35 -4.17 -0.06 -29.08 16
12 N -0.60 -20.52 2.79 -851.05 -2.37 -22.90 16
13 C 0.08 1.82 10.08 127.77 1.29 3.10 16
14 C 0.13 5.38 5.41 86.38 0.47 5.85 16
15 C 0.14 6.56 4.58 45.09 0.21 6.76 16
16 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16
17 C -0.13 -6.64 7.29 31.26 0.23 -6.42 16
18 C 0.16 9.55 7.39 86.48 0.64 10.19 16
19 N -0.62 -36.38 3.57 -694.08 -2.48 -38.85 16
20 C -0.23 -14.11 10.51 84.03 0.88 -13.22 16
21 H 0.09 5.11 7.83 -2.91 -0.02 5.09 16
22 C -0.07 -4.61 5.50 84.86 0.47 -4.15 16
23 N -0.96 -63.47 11.53 21.65 0.25 -63.22 16
24 Si 0.99 48.87 29.55 68.60 2.03 50.89 16
25 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16
26 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16
27 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16
28 C 0.52 15.28 7.44 85.17 0.63 15.91 16
29 O -0.59 -24.47 16.11 -4.94 -0.08 -24.55 16
30 H 0.08 0.42 8.14 -2.39 -0.02 0.40 16
31 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16
32 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16
33 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16
34 H 0.06 0.27 6.33 -2.39 -0.02 0.26 16
35 H 0.06 0.37 8.14 -2.39 -0.02 0.36 16
36 H 0.09 -0.04 8.14 -2.38 -0.02 -0.06 16
37 H 0.07 1.41 7.38 -2.39 -0.02 1.39 16
38 H 0.14 0.39 8.00 -2.38 -0.02 0.37 16
39 H 0.22 -1.30 7.88 -2.91 -0.02 -1.32 16
40 H 0.20 -0.64 8.06 -2.91 -0.02 -0.67 16
41 H 0.15 1.79 8.06 -2.91 -0.02 1.77 16
42 H 0.09 1.34 8.14 -2.38 -0.02 1.32 16
43 H 0.08 1.70 8.03 -2.39 -0.02 1.68 16
44 H 0.07 1.45 7.00 -2.39 -0.02 1.43 16
45 H 0.09 3.30 8.11 -2.39 -0.02 3.28 16
46 H 0.06 2.76 7.20 -2.39 -0.02 2.74 16
47 H 0.06 3.21 6.84 -2.39 -0.02 3.20 16
48 H 0.05 2.69 8.14 -2.38 -0.02 2.67 16
49 H 0.03 1.93 7.41 -2.39 -0.02 1.91 16
50 H 0.02 1.23 8.14 -2.39 -0.02 1.21 16
51 H 0.25 15.84 8.31 -92.71 -0.77 15.06 16
Total: -1.00 -100.57 412.52 4.65 -95.92
By element:
Atomic # 1 Polarization: 7.26 SS G_CDS: 0.90 Total: 8.17 kcal
Atomic # 6 Polarization: 24.90 SS G_CDS: 8.06 Total: 32.97 kcal
Atomic # 7 Polarization: -128.11 SS G_CDS: -6.20 Total: -134.32 kcal
Atomic # 8 Polarization: -53.49 SS G_CDS: -0.14 Total: -53.63 kcal
Atomic # 14 Polarization: 48.87 SS G_CDS: 2.03 Total: 50.89 kcal
Total: -100.57 4.65 -95.92 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001085855458.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 93.724 kcal
(2) G-P(sol) polarization free energy of solvation -100.572 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.848 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.649 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -95.922 kcal
(6) G-S(sol) free energy of system = (1) + (5) -2.199 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.06 seconds