Wall clock time and date at job start Wed Apr 1 2020 05:14:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47424 * 2 1 4 4 C 1.52998 * 109.47489 * 239.99661 * 2 1 3 5 5 C 1.50696 * 109.47420 * 294.99942 * 4 2 1 6 6 O 1.21280 * 119.99565 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00331 * 179.97438 * 5 4 2 8 8 C 1.46498 * 120.00023 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47070 * 180.02562 * 8 7 5 10 10 C 1.37991 * 119.59022 * 95.00033 * 9 8 7 11 11 C 1.39244 * 119.08814 * 179.97438 * 10 9 8 12 12 O 1.35741 * 120.84598 * 180.02562 * 11 10 9 13 13 C 1.42898 * 117.00006 * 174.55881 * 12 11 10 14 14 H 1.09005 * 110.64491 * 327.09192 * 13 12 11 15 15 C 1.55161 * 110.72330 * 203.94973 * 13 12 11 16 16 C 1.54905 * 101.58385 * 206.13665 * 15 13 12 17 17 N 1.47425 * 104.83152 * 37.01098 * 16 15 13 18 18 C 1.36937 * 125.65003 * 155.83511 * 17 16 15 19 19 H 1.07996 * 120.00351 * 180.02562 * 18 17 16 20 20 C 1.38812 * 119.99842 * 0.02562 * 18 17 16 21 21 N 1.31621 * 120.00125 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00204 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47043 * 90.00074 * 22 20 18 24 24 H 1.48496 * 109.47623 * 210.00194 * 22 20 18 25 25 H 1.48506 * 109.47016 * 330.00173 * 22 20 18 26 26 C 1.47022 * 108.70416 * 335.86676 * 17 16 15 27 27 C 1.39287 * 118.31175 * 359.97438 * 11 10 9 28 28 C 1.37952 * 119.08919 * 0.02562 * 27 11 10 29 29 N 1.31947 * 119.58617 * 274.72392 * 9 8 7 30 30 H 1.08996 * 109.47526 * 300.00571 * 1 2 3 31 31 H 1.08998 * 109.46808 * 60.00676 * 1 2 3 32 32 H 1.08998 * 109.47257 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47189 * 119.99731 * 2 1 3 34 34 H 1.09008 * 109.46718 * 300.00019 * 3 2 1 35 35 H 1.08996 * 109.47235 * 59.99251 * 3 2 1 36 36 H 1.08997 * 109.47556 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.47178 * 55.00528 * 4 2 1 38 38 H 1.09004 * 109.47258 * 174.99819 * 4 2 1 39 39 H 0.96993 * 119.99941 * 0.02562 * 7 5 4 40 40 H 1.09000 * 109.47096 * 299.99723 * 8 7 5 41 41 H 1.09004 * 109.47418 * 59.99949 * 8 7 5 42 42 H 1.07991 * 120.45705 * 359.95148 * 10 9 8 43 43 H 1.09003 * 111.00145 * 324.21608 * 15 13 12 44 44 H 1.08999 * 111.00162 * 88.05969 * 15 13 12 45 45 H 1.09004 * 110.36717 * 155.84805 * 16 15 13 46 46 H 1.09004 * 110.36705 * 278.06164 * 16 15 13 47 47 H 0.97003 * 119.99959 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.88326 * 241.64467 * 26 17 16 49 49 H 1.08997 * 109.88179 * 120.47927 * 26 17 16 50 50 H 1.07995 * 120.46108 * 179.97438 * 27 11 10 51 51 H 1.07994 * 119.58895 * 180.02562 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 -2.1733 -1.1888 6 8 1.0110 -2.5901 -0.2403 7 7 1.9846 -3.0086 -2.1893 8 6 1.5966 -4.4200 -2.1309 9 6 2.0992 -5.1305 -3.3612 10 6 3.3058 -5.7985 -3.3172 11 6 3.7599 -6.4518 -4.4599 12 8 4.9414 -7.1202 -4.4564 13 6 5.2717 -7.8602 -5.6333 14 1 4.3717 -8.2582 -6.1022 15 6 6.2690 -9.0018 -5.3023 16 6 6.9864 -9.1922 -6.6619 17 7 7.1110 -7.8319 -7.2165 18 6 8.0456 -7.4255 -8.1312 19 1 8.0540 -6.4022 -8.4765 20 6 8.9823 -8.3287 -8.6146 21 7 8.9718 -9.5760 -8.1942 22 14 10.2567 -7.7746 -9.8628 23 1 11.4644 -7.2829 -9.1522 24 1 10.6266 -8.9188 -10.7341 25 1 9.6923 -6.6814 -10.6945 26 6 6.0663 -6.9837 -6.6243 27 6 2.9705 -6.4031 -5.6064 28 6 1.7760 -5.7140 -5.5695 29 7 1.3772 -5.1107 -4.4655 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4425 -0.0005 37 1 1.6055 -0.2618 -2.1370 38 1 3.1264 -0.6443 -1.2951 39 1 2.4885 -2.6752 -2.9481 40 1 2.0313 -4.8798 -1.2433 41 1 0.5103 -4.4967 -2.0848 42 1 3.8902 -5.8140 -2.4092 43 1 6.9726 -8.6938 -4.5289 44 1 5.7408 -9.9090 -5.0088 45 1 7.9721 -9.6327 -6.5124 46 1 6.3875 -9.8195 -7.3223 47 1 9.6261 -10.2072 -8.5322 48 1 5.4029 -6.6129 -7.4056 49 1 6.5234 -6.1475 -6.0954 50 1 3.2895 -6.8973 -6.5122 51 1 1.1574 -5.6713 -6.4537 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101088059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:44 Heat of formation + Delta-G solvation = -24.034881 kcal Electronic energy + Delta-G solvation = -29517.109480 eV Core-core repulsion = 25417.220469 eV Total energy + Delta-G solvation = -4099.889011 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.88718 -40.06040 -38.81116 -36.52642 -36.09766 -34.99207 -32.58688 -31.90901 -31.28594 -29.38062 -29.03482 -27.64265 -27.38703 -26.28913 -24.69304 -23.61420 -22.34052 -21.27039 -20.42254 -20.36534 -20.06052 -18.32410 -17.37616 -17.28101 -16.68342 -16.28566 -15.94064 -15.78821 -15.50640 -14.94770 -14.91021 -14.73811 -14.28202 -14.08981 -14.03772 -13.84639 -13.49098 -13.21368 -13.06106 -13.01717 -12.61966 -12.61523 -12.43464 -12.17085 -12.01409 -11.80695 -11.43928 -11.40349 -11.18652 -11.10927 -11.00038 -10.87963 -10.69994 -10.51403 -10.19612 -10.08780 -9.96844 -9.75243 -9.70672 -9.35541 -9.27924 -8.81520 -8.78288 -7.00918 -5.78953 -3.21950 0.81704 1.23630 2.40145 2.90523 3.09743 3.32910 3.38075 3.39923 3.70755 3.97517 4.37268 4.38266 4.48259 4.54153 4.58311 4.69842 4.93053 4.94676 4.99671 5.08649 5.10840 5.15512 5.23787 5.27754 5.31670 5.36835 5.38000 5.40905 5.44855 5.55952 5.58962 5.59932 5.67080 5.74854 5.82687 5.99026 6.01340 6.06546 6.09331 6.20747 6.24172 6.30579 6.35285 6.43012 6.52739 7.20117 7.29562 7.37503 7.47969 7.68956 7.82352 7.96161 8.19702 9.07081 9.67297 10.29339 11.25396 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.001755 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.913117 B =15949.123831 C =16865.610466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 C -0.149 4.149 4 C -0.138 4.138 5 C 0.515 3.485 6 O -0.538 6.538 7 N -0.724 5.724 8 C 0.177 3.823 9 C 0.132 3.868 10 C -0.192 4.192 11 C 0.182 3.818 12 O -0.296 6.296 13 C 0.066 3.934 14 H 0.081 0.919 15 C -0.136 4.136 16 C 0.152 3.848 17 N -0.600 5.600 18 C -0.227 4.227 19 H 0.079 0.921 20 C -0.009 4.009 21 N -0.922 5.922 22 Si 0.918 3.082 23 H -0.287 1.287 24 H -0.289 1.289 25 H -0.281 1.281 26 C 0.121 3.879 27 C -0.253 4.253 28 C 0.136 3.864 29 N -0.501 5.501 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.403 0.597 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.142 0.858 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.115 0.885 46 H 0.018 0.982 47 H 0.254 0.746 48 H 0.027 0.973 49 H 0.035 0.965 50 H 0.145 0.855 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.337 13.806 12.460 24.106 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.100 4.100 3 C -0.206 4.206 4 C -0.178 4.178 5 C 0.302 3.698 6 O -0.415 6.415 7 N -0.377 5.377 8 C 0.053 3.947 9 C -0.005 4.005 10 C -0.214 4.214 11 C 0.127 3.873 12 O -0.205 6.205 13 C 0.010 3.990 14 H 0.099 0.901 15 C -0.175 4.175 16 C 0.027 3.973 17 N -0.327 5.327 18 C -0.355 4.355 19 H 0.097 0.903 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.748 3.252 23 H -0.214 1.214 24 H -0.215 1.215 25 H -0.207 1.207 26 C -0.006 4.006 27 C -0.274 4.274 28 C -0.020 4.020 29 N -0.214 5.214 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.074 0.926 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.237 0.763 40 H 0.103 0.897 41 H 0.105 0.895 42 H 0.159 0.841 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.133 0.867 46 H 0.036 0.964 47 H 0.065 0.935 48 H 0.045 0.955 49 H 0.053 0.947 50 H 0.163 0.837 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -16.219 13.803 13.171 25.041 hybrid contribution 1.666 -0.201 -1.497 2.249 sum -14.552 13.602 11.674 23.088 Atomic orbital electron populations 1.21963 0.94713 1.03405 1.01024 1.20863 0.96666 0.95334 0.97109 1.21870 1.00943 0.95783 1.02007 1.21794 1.03053 0.91797 1.01143 1.20742 0.78961 0.88308 0.81826 1.90677 1.39638 1.77977 1.33177 1.45996 1.58251 1.09231 1.24178 1.20034 1.01152 0.80250 0.93263 1.20818 0.90425 0.95415 0.93829 1.21284 0.98358 1.03129 0.98633 1.19402 0.85238 0.89403 0.93240 1.86177 1.32795 1.60447 1.41128 1.23848 0.98274 0.92645 0.84258 0.90138 1.23241 0.97156 0.94912 1.02157 1.22014 1.01339 0.86982 0.86922 1.44363 1.32937 1.06196 1.49243 1.19070 1.05803 0.95485 1.15117 0.90316 1.24812 0.99522 0.95633 1.00479 1.69745 1.37710 1.02978 1.46591 0.86026 0.81297 0.77379 0.80496 1.21442 1.21510 1.20655 1.21666 0.91364 0.93929 0.93643 1.22464 0.98459 1.06728 0.99748 1.22522 0.92960 0.90896 0.95640 1.67512 1.34101 1.20624 0.99201 0.92973 0.93374 0.90684 0.90386 0.92631 0.92376 0.92623 0.88792 0.88776 0.76290 0.89723 0.89504 0.84058 0.90646 0.91342 0.86720 0.96404 0.93490 0.95516 0.94693 0.83691 0.82314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 8.93 37.15 0.33 -0.90 16 2 C -0.08 -0.59 2.57 -90.62 -0.23 -0.82 16 3 C -0.15 -0.83 9.19 37.16 0.34 -0.49 16 4 C -0.14 -0.91 5.17 -27.89 -0.14 -1.06 16 5 C 0.51 4.90 7.55 -10.99 -0.08 4.81 16 6 O -0.54 -6.89 13.96 5.56 0.08 -6.81 16 7 N -0.72 -6.32 5.55 -61.47 -0.34 -6.66 16 8 C 0.18 1.73 5.98 -5.20 -0.03 1.70 16 9 C 0.13 1.46 6.14 -82.63 -0.51 0.96 16 10 C -0.19 -2.29 9.68 -39.30 -0.38 -2.67 16 11 C 0.18 2.50 6.72 -38.82 -0.26 2.24 16 12 O -0.30 -4.71 9.88 -18.93 -0.19 -4.89 16 13 C 0.07 1.11 2.75 -24.89 -0.07 1.04 16 14 H 0.08 1.23 6.30 -51.93 -0.33 0.91 16 15 C -0.14 -2.47 6.81 -24.58 -0.17 -2.64 16 16 C 0.15 3.51 5.89 -2.53 -0.01 3.49 16 17 N -0.60 -14.83 3.39 -170.07 -0.58 -15.41 16 18 C -0.23 -6.13 10.27 -15.06 -0.15 -6.29 16 19 H 0.08 2.06 7.83 -52.49 -0.41 1.65 16 20 C -0.01 -0.24 5.49 -17.43 -0.10 -0.33 16 21 N -0.92 -25.90 10.09 55.49 0.56 -25.34 16 22 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 23 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 24 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 25 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 26 C 0.12 2.43 6.85 -3.06 -0.02 2.41 16 27 C -0.25 -3.15 8.99 -39.30 -0.35 -3.50 16 28 C 0.14 1.52 11.17 -17.59 -0.20 1.32 16 29 N -0.50 -5.96 10.27 -9.55 -0.10 -6.05 16 30 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 0.77 5.95 -51.93 -0.31 0.46 16 33 H 0.08 0.67 7.96 -51.92 -0.41 0.25 16 34 H 0.05 0.28 8.14 -51.92 -0.42 -0.14 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.40 2.96 8.46 -40.82 -0.35 2.61 16 40 H 0.08 0.79 8.04 -51.93 -0.42 0.38 16 41 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.14 1.51 8.06 -52.49 -0.42 1.08 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.12 2.98 5.87 -51.93 -0.31 2.68 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 48 H 0.03 0.52 7.87 -51.93 -0.41 0.11 16 49 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 50 H 0.15 1.77 5.85 -52.49 -0.31 1.46 16 51 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 410.36 15.07 6.18 6.18 Total: -1.00 -31.11 410.36 -9.74 -40.84 By element: Atomic # 1 Polarization: 10.77 SS G_CDS: -8.29 Total: 2.47 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -2.04 Total: -0.73 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.46 Total: -53.46 kcal Atomic # 8 Polarization: -11.60 SS G_CDS: -0.11 Total: -11.71 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -31.11 -9.74 -40.84 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101088059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.809 kcal (2) G-P(sol) polarization free energy of solvation -31.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.297 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds