Wall clock time and date at job start Wed Apr 1 2020 05:14:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53000 * 109.47424 * 2 1 4 4 C 1.52998 * 109.47489 * 239.99661 * 2 1 3 5 5 C 1.50696 * 109.47420 * 294.99942 * 4 2 1 6 6 O 1.21280 * 119.99565 * 0.02562 * 5 4 2 7 7 N 1.34776 * 120.00331 * 179.97438 * 5 4 2 8 8 C 1.46498 * 120.00023 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47070 * 180.02562 * 8 7 5 10 10 C 1.37991 * 119.59022 * 95.00033 * 9 8 7 11 11 C 1.39244 * 119.08814 * 179.97438 * 10 9 8 12 12 O 1.35741 * 120.84598 * 180.02562 * 11 10 9 13 13 C 1.42898 * 117.00006 * 174.55881 * 12 11 10 14 14 H 1.09005 * 110.64491 * 327.09192 * 13 12 11 15 15 C 1.55161 * 110.72330 * 203.94973 * 13 12 11 16 16 C 1.54905 * 101.58385 * 206.13665 * 15 13 12 17 17 N 1.47425 * 104.83152 * 37.01098 * 16 15 13 18 18 C 1.36937 * 125.65003 * 155.83511 * 17 16 15 19 19 H 1.07996 * 120.00351 * 180.02562 * 18 17 16 20 20 C 1.38812 * 119.99842 * 0.02562 * 18 17 16 21 21 N 1.31621 * 120.00125 * 0.02562 * 20 18 17 22 22 Si 1.86799 * 120.00204 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47043 * 90.00074 * 22 20 18 24 24 H 1.48496 * 109.47623 * 210.00194 * 22 20 18 25 25 H 1.48506 * 109.47016 * 330.00173 * 22 20 18 26 26 C 1.47022 * 108.70416 * 335.86676 * 17 16 15 27 27 C 1.39287 * 118.31175 * 359.97438 * 11 10 9 28 28 C 1.37952 * 119.08919 * 0.02562 * 27 11 10 29 29 N 1.31947 * 119.58617 * 274.72392 * 9 8 7 30 30 H 1.08996 * 109.47526 * 300.00571 * 1 2 3 31 31 H 1.08998 * 109.46808 * 60.00676 * 1 2 3 32 32 H 1.08998 * 109.47257 * 179.97438 * 1 2 3 33 33 H 1.09008 * 109.47189 * 119.99731 * 2 1 3 34 34 H 1.09008 * 109.46718 * 300.00019 * 3 2 1 35 35 H 1.08996 * 109.47235 * 59.99251 * 3 2 1 36 36 H 1.08997 * 109.47556 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.47178 * 55.00528 * 4 2 1 38 38 H 1.09004 * 109.47258 * 174.99819 * 4 2 1 39 39 H 0.96993 * 119.99941 * 0.02562 * 7 5 4 40 40 H 1.09000 * 109.47096 * 299.99723 * 8 7 5 41 41 H 1.09004 * 109.47418 * 59.99949 * 8 7 5 42 42 H 1.07991 * 120.45705 * 359.95148 * 10 9 8 43 43 H 1.09003 * 111.00145 * 324.21608 * 15 13 12 44 44 H 1.08999 * 111.00162 * 88.05969 * 15 13 12 45 45 H 1.09004 * 110.36717 * 155.84805 * 16 15 13 46 46 H 1.09004 * 110.36705 * 278.06164 * 16 15 13 47 47 H 0.97003 * 119.99959 * 179.97438 * 21 20 18 48 48 H 1.09001 * 109.88326 * 241.64467 * 26 17 16 49 49 H 1.08997 * 109.88179 * 120.47927 * 26 17 16 50 50 H 1.07995 * 120.46108 * 179.97438 * 27 11 10 51 51 H 1.07994 * 119.58895 * 180.02562 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 1.6414 -2.1733 -1.1888 6 8 1.0110 -2.5901 -0.2403 7 7 1.9846 -3.0086 -2.1893 8 6 1.5966 -4.4200 -2.1309 9 6 2.0992 -5.1305 -3.3612 10 6 3.3058 -5.7985 -3.3172 11 6 3.7599 -6.4518 -4.4599 12 8 4.9414 -7.1202 -4.4564 13 6 5.2717 -7.8602 -5.6333 14 1 4.3717 -8.2582 -6.1022 15 6 6.2690 -9.0018 -5.3023 16 6 6.9864 -9.1922 -6.6619 17 7 7.1110 -7.8319 -7.2165 18 6 8.0456 -7.4255 -8.1312 19 1 8.0540 -6.4022 -8.4765 20 6 8.9823 -8.3287 -8.6146 21 7 8.9718 -9.5760 -8.1942 22 14 10.2567 -7.7746 -9.8628 23 1 11.4644 -7.2829 -9.1522 24 1 10.6266 -8.9188 -10.7341 25 1 9.6923 -6.6814 -10.6945 26 6 6.0663 -6.9837 -6.6243 27 6 2.9705 -6.4031 -5.6064 28 6 1.7760 -5.7140 -5.5695 29 7 1.3772 -5.1107 -4.4655 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3634 -1.0276 -0.0005 33 1 1.8933 -0.5138 0.8901 34 1 1.6766 1.9563 -0.8901 35 1 1.6766 1.9564 0.8899 36 1 3.1300 1.4425 -0.0005 37 1 1.6055 -0.2618 -2.1370 38 1 3.1264 -0.6443 -1.2951 39 1 2.4885 -2.6752 -2.9481 40 1 2.0313 -4.8798 -1.2433 41 1 0.5103 -4.4967 -2.0848 42 1 3.8902 -5.8140 -2.4092 43 1 6.9726 -8.6938 -4.5289 44 1 5.7408 -9.9090 -5.0088 45 1 7.9721 -9.6327 -6.5124 46 1 6.3875 -9.8195 -7.3223 47 1 9.6261 -10.2072 -8.5322 48 1 5.4029 -6.6129 -7.4056 49 1 6.5234 -6.1475 -6.0954 50 1 3.2895 -6.8973 -6.5122 51 1 1.1574 -5.6713 -6.4537 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101088059.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:43 Heat of formation + Delta-G solvation = -42.970468 kcal Electronic energy + Delta-G solvation = -29517.930588 eV Core-core repulsion = 25417.220469 eV Total energy + Delta-G solvation = -4100.710119 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.88789 -40.87563 -39.99851 -38.06080 -36.74415 -35.79049 -34.40608 -32.78734 -32.42609 -31.10744 -29.77939 -29.11455 -27.92320 -27.19440 -26.48710 -24.55980 -23.46919 -22.18466 -21.97945 -21.60008 -20.77054 -19.37181 -19.08429 -18.16527 -17.74784 -17.10209 -17.05904 -16.69395 -16.63026 -16.59477 -15.95509 -15.70855 -15.49308 -15.27627 -14.80721 -14.71928 -14.63532 -14.38545 -14.22169 -14.11379 -13.85854 -13.67097 -13.30977 -13.20344 -12.99803 -12.98412 -12.74624 -12.69677 -12.55966 -12.19556 -12.06595 -12.04326 -11.96616 -11.78255 -11.72957 -11.54915 -11.45916 -10.87983 -10.79393 -10.63044 -10.18020 -10.11683 -9.90104 -8.97274 -7.82657 -5.28107 -0.08742 0.26027 1.46933 1.48183 1.56871 1.67525 1.89446 2.18353 2.47164 2.81747 3.13208 3.28707 3.48118 3.59343 3.72471 3.76167 3.80101 3.87093 3.93564 3.95900 4.05572 4.10111 4.12185 4.38584 4.42246 4.52262 4.59572 4.65154 4.70803 4.71860 4.74809 4.77731 4.79297 4.82257 4.87718 4.92209 4.97769 5.07568 5.09040 5.13475 5.32338 5.32950 5.41426 5.47081 5.51427 5.53479 5.55275 5.72458 6.19593 6.25998 6.51382 6.91934 7.04789 7.25052 7.70045 8.31904 9.19415 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.016448 B = 0.001755 C = 0.001660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1701.913117 B =15949.123831 C =16865.610466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.082 4.082 3 C -0.144 4.144 4 C -0.133 4.133 5 C 0.512 3.488 6 O -0.575 6.575 7 N -0.718 5.718 8 C 0.181 3.819 9 C 0.139 3.861 10 C -0.191 4.191 11 C 0.159 3.841 12 O -0.305 6.305 13 C 0.084 3.916 14 H 0.102 0.898 15 C -0.124 4.124 16 C 0.154 3.846 17 N -0.623 5.623 18 C -0.243 4.243 19 H 0.081 0.919 20 C -0.063 4.063 21 N -0.946 5.946 22 Si 0.982 3.018 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.270 1.270 26 C 0.119 3.881 27 C -0.256 4.256 28 C 0.139 3.861 29 N -0.509 5.509 30 H 0.054 0.946 31 H 0.058 0.942 32 H 0.048 0.952 33 H 0.060 0.940 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.062 0.938 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.411 0.589 40 H 0.088 0.912 41 H 0.079 0.921 42 H 0.152 0.848 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.003 0.997 47 H 0.250 0.750 48 H 0.037 0.963 49 H 0.026 0.974 50 H 0.148 0.852 51 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.192 15.468 12.239 25.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.101 4.101 3 C -0.201 4.201 4 C -0.172 4.172 5 C 0.300 3.700 6 O -0.455 6.455 7 N -0.370 5.370 8 C 0.057 3.943 9 C 0.002 3.998 10 C -0.212 4.212 11 C 0.105 3.895 12 O -0.216 6.216 13 C 0.028 3.972 14 H 0.120 0.880 15 C -0.162 4.162 16 C 0.029 3.971 17 N -0.350 5.350 18 C -0.372 4.372 19 H 0.099 0.901 20 C -0.255 4.255 21 N -0.596 5.596 22 Si 0.809 3.191 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.195 1.195 26 C -0.007 4.007 27 C -0.276 4.276 28 C -0.017 4.017 29 N -0.223 5.223 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.067 0.933 33 H 0.078 0.922 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.081 0.919 37 H 0.131 0.869 38 H 0.132 0.868 39 H 0.247 0.753 40 H 0.107 0.893 41 H 0.097 0.903 42 H 0.169 0.831 43 H 0.088 0.912 44 H 0.116 0.884 45 H 0.099 0.901 46 H 0.021 0.979 47 H 0.059 0.941 48 H 0.055 0.945 49 H 0.044 0.956 50 H 0.165 0.835 51 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges -17.094 15.498 12.951 26.459 hybrid contribution 1.836 -0.659 -1.384 2.392 sum -15.258 14.839 11.566 24.224 Atomic orbital electron populations 1.21924 0.95467 1.01842 1.01670 1.20856 0.96047 0.96430 0.96757 1.21826 1.01395 0.94399 1.02494 1.21839 1.04352 0.89505 1.01519 1.21289 0.78138 0.89412 0.81149 1.90669 1.41376 1.78789 1.34646 1.45950 1.57969 1.08730 1.24358 1.19951 1.00637 0.80889 0.92858 1.20920 0.89946 0.94935 0.93969 1.21411 0.98595 1.02660 0.98583 1.19639 0.84979 0.90376 0.94468 1.86137 1.34198 1.61055 1.40170 1.23512 0.98252 0.91432 0.83997 0.88039 1.23036 0.97288 0.96942 0.98959 1.21780 0.99934 0.86221 0.89158 1.44640 1.33735 1.07440 1.49197 1.19417 1.06493 0.95710 1.15565 0.90132 1.25633 1.01511 0.95860 1.02544 1.69989 1.38232 1.03778 1.47563 0.85037 0.78784 0.76973 0.78260 1.21270 1.21825 1.19504 1.21779 0.90766 0.93702 0.94434 1.22548 0.98764 1.06947 0.99380 1.22954 0.92696 0.89790 0.96247 1.67584 1.34313 1.20798 0.99601 0.92739 0.92334 0.93250 0.92194 0.91716 0.92347 0.91854 0.86908 0.86788 0.75281 0.89347 0.90293 0.83072 0.91176 0.88364 0.90080 0.97924 0.94061 0.94498 0.95636 0.83458 0.79561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.33 8.93 71.98 0.64 -1.69 16 2 C -0.08 -1.09 2.57 -10.80 -0.03 -1.12 16 3 C -0.14 -1.31 9.19 71.98 0.66 -0.65 16 4 C -0.13 -1.49 5.17 29.85 0.15 -1.33 16 5 C 0.51 9.19 7.55 87.66 0.66 9.85 16 6 O -0.58 -14.76 13.96 -3.03 -0.04 -14.80 16 7 N -0.72 -11.42 5.55 -466.79 -2.59 -14.01 16 8 C 0.18 3.32 5.98 85.63 0.51 3.83 16 9 C 0.14 2.84 6.14 42.48 0.26 3.10 16 10 C -0.19 -4.21 9.68 22.45 0.22 -3.99 16 11 C 0.16 4.08 6.72 22.76 0.15 4.23 16 12 O -0.30 -9.22 9.88 -90.65 -0.90 -10.12 16 13 C 0.08 2.73 2.75 31.79 0.09 2.82 16 14 H 0.10 2.88 6.30 -2.38 -0.02 2.86 16 15 C -0.12 -4.39 6.81 31.99 0.22 -4.17 16 16 C 0.15 7.20 5.89 86.85 0.51 7.71 16 17 N -0.62 -31.04 3.39 -691.99 -2.35 -33.39 16 18 C -0.24 -13.28 10.27 84.03 0.86 -12.41 16 19 H 0.08 4.23 7.83 -2.91 -0.02 4.20 16 20 C -0.06 -3.45 5.49 84.86 0.47 -2.98 16 21 N -0.95 -54.44 10.09 21.65 0.22 -54.22 16 22 Si 0.98 44.32 29.55 68.60 2.03 46.34 16 23 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 24 H -0.29 -13.21 7.11 99.48 0.71 -12.50 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 C 0.12 4.71 6.85 86.73 0.59 5.31 16 27 C -0.26 -5.79 8.99 22.45 0.20 -5.59 16 28 C 0.14 2.75 11.17 84.60 0.95 3.70 16 29 N -0.51 -10.99 10.27 -184.13 -1.89 -12.88 16 30 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.05 1.03 5.95 -2.39 -0.01 1.01 16 33 H 0.06 1.01 7.96 -2.38 -0.02 0.99 16 34 H 0.06 0.49 8.14 -2.38 -0.02 0.47 16 35 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 36 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.11 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.41 5.17 8.46 -92.71 -0.78 4.38 16 40 H 0.09 1.57 8.04 -2.39 -0.02 1.55 16 41 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 42 H 0.15 2.96 8.06 -2.91 -0.02 2.94 16 43 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 45 H 0.08 4.36 5.87 -2.38 -0.01 4.35 16 46 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 47 H 0.25 13.94 8.31 -92.71 -0.77 13.16 16 48 H 0.04 1.39 7.87 -2.39 -0.02 1.37 16 49 H 0.03 1.06 8.06 -2.39 -0.02 1.04 16 50 H 0.15 3.25 5.85 -2.91 -0.02 3.23 16 51 H 0.19 2.54 8.06 -2.91 -0.02 2.52 16 Total: -1.00 -68.27 410.36 1.75 -66.52 By element: Atomic # 1 Polarization: 19.81 SS G_CDS: 0.15 Total: 19.95 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 7.12 Total: 6.59 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -6.61 Total: -114.49 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -0.94 Total: -24.92 kcal Atomic # 14 Polarization: 44.32 SS G_CDS: 2.03 Total: 46.34 kcal Total: -68.27 1.75 -66.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101088059.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.551 kcal (2) G-P(sol) polarization free energy of solvation -68.267 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.521 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds