Wall clock time and date at job start Wed Apr 1 2020 05:14:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47097 * 2 1 4 4 C 1.53004 * 109.47064 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47099 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99946 * 359.97438 * 5 4 3 7 7 N 1.34771 * 119.99888 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00013 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47598 * 179.97438 * 8 7 5 10 10 C 1.37992 * 119.58823 * 94.99704 * 9 8 7 11 11 C 1.39248 * 119.08944 * 180.02562 * 10 9 8 12 12 O 1.35746 * 120.84509 * 179.97438 * 11 10 9 13 13 C 1.42898 * 116.99871 * 174.56861 * 12 11 10 14 14 H 1.08994 * 110.63967 * 327.10252 * 13 12 11 15 15 C 1.55156 * 110.71535 * 203.96438 * 13 12 11 16 16 C 1.54908 * 101.57913 * 206.13124 * 15 13 12 17 17 N 1.47420 * 104.83463 * 37.01293 * 16 15 13 18 18 C 1.36934 * 125.65150 * 155.83157 * 17 16 15 19 19 H 1.08008 * 120.00008 * 180.02562 * 18 17 16 20 20 C 1.38802 * 120.00167 * 0.02704 * 18 17 16 21 21 N 1.31623 * 120.00026 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00309 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46866 * 59.99909 * 22 20 18 24 24 H 1.48498 * 109.47300 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46883 * 300.00128 * 22 20 18 26 26 C 1.47026 * 108.69935 * 335.87214 * 17 16 15 27 27 C 1.39278 * 118.30800 * 0.25664 * 11 10 9 28 28 C 1.37955 * 119.09508 * 359.50023 * 27 11 10 29 29 N 1.31946 * 119.59111 * 275.02789 * 9 8 7 30 30 H 1.09000 * 109.46931 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46425 * 299.99652 * 1 2 3 32 32 H 1.08994 * 109.47583 * 59.99879 * 1 2 3 33 33 H 1.08999 * 109.46909 * 240.00245 * 2 1 3 34 34 H 1.09001 * 109.47501 * 120.00548 * 2 1 3 35 35 H 1.08999 * 109.47041 * 60.00326 * 3 2 1 36 36 H 1.08998 * 109.47013 * 299.99953 * 3 2 1 37 37 H 1.09003 * 109.46685 * 60.00209 * 4 3 2 38 38 H 1.09001 * 109.47275 * 300.00389 * 4 3 2 39 39 H 0.96995 * 120.00525 * 359.97438 * 7 5 4 40 40 H 1.09003 * 109.47338 * 59.99638 * 8 7 5 41 41 H 1.09001 * 109.47376 * 300.00259 * 8 7 5 42 42 H 1.07999 * 120.45837 * 0.02562 * 10 9 8 43 43 H 1.08994 * 111.00950 * 324.21006 * 15 13 12 44 44 H 1.09007 * 111.00540 * 88.06391 * 15 13 12 45 45 H 1.09001 * 110.36588 * 155.85056 * 16 15 13 46 46 H 1.09002 * 110.37204 * 278.05900 * 16 15 13 47 47 H 0.97002 * 119.99856 * 180.02562 * 21 20 18 48 48 H 1.09003 * 109.88041 * 241.64032 * 26 17 16 49 49 H 1.08995 * 109.88728 * 120.47640 * 26 17 16 50 50 H 1.08000 * 120.45450 * 179.72577 * 27 11 10 51 51 H 1.07998 * 119.59132 * 180.23189 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8633 -0.0013 6 8 3.2842 3.7851 -0.0017 7 7 5.3974 3.1096 -0.0024 8 6 5.8857 4.4908 -0.0025 9 6 7.3927 4.4908 -0.0032 10 6 8.0734 4.5956 -1.1990 11 6 9.4659 4.5941 -1.1877 12 8 10.1714 4.6947 -2.3430 13 6 11.5915 4.8051 -2.2284 14 1 11.8628 5.3491 -1.3237 15 6 12.1915 5.4928 -3.4831 16 6 13.6301 4.9184 -3.4944 17 7 13.4825 3.5219 -3.0456 18 6 14.3483 2.4983 -3.3242 19 1 14.1500 1.5057 -2.9474 20 6 15.4807 2.7363 -4.0908 21 7 15.7226 3.9460 -4.5495 22 14 16.6622 1.3400 -4.4703 23 1 15.9447 0.2723 -5.2121 24 1 17.7833 1.8515 -5.2989 25 1 17.1982 0.7863 -3.2008 26 6 12.2511 3.4102 -2.2500 27 6 10.1163 4.4806 0.0387 28 6 9.3636 4.3851 1.1909 29 7 8.0448 4.3902 1.1394 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9329 0.9288 -0.8909 38 1 3.9337 0.9285 0.8891 39 1 6.0277 2.3724 -0.0025 40 1 5.5232 5.0044 0.8880 41 1 5.5216 5.0049 -0.8919 42 1 7.5337 4.6776 -2.1308 43 1 11.6489 5.2052 -4.3835 44 1 12.2046 6.5765 -3.3661 45 1 14.0438 4.9511 -4.5024 46 1 14.2663 5.4747 -2.8060 47 1 16.5138 4.1122 -5.0855 48 1 12.4933 3.0989 -1.2339 49 1 11.5766 2.6883 -2.7103 50 1 11.1951 4.4713 0.0874 51 1 9.8597 4.3006 2.1465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001101091060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:52 Heat of formation + Delta-G solvation = -28.707861 kcal Electronic energy + Delta-G solvation = -29193.174482 eV Core-core repulsion = 25093.082836 eV Total energy + Delta-G solvation = -4100.091646 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.87966 -39.93270 -38.79131 -36.50237 -35.83985 -35.05718 -32.58550 -32.00855 -31.29238 -30.73602 -29.37347 -27.84192 -26.94488 -24.84474 -24.49818 -23.60497 -22.25321 -21.48607 -20.63383 -20.41818 -20.21605 -18.30658 -17.32749 -17.20913 -16.68794 -16.37128 -16.19002 -15.78848 -15.51097 -15.12978 -14.88630 -14.72151 -14.27004 -14.15687 -13.96300 -13.84445 -13.57041 -13.50018 -13.10092 -13.01443 -12.68643 -12.65480 -12.59160 -12.01568 -11.80319 -11.68267 -11.58180 -11.40462 -11.35447 -11.10952 -10.94186 -10.86587 -10.70094 -10.51393 -10.22090 -10.20051 -9.96887 -9.74788 -9.70841 -9.37168 -9.28944 -8.81487 -8.77858 -7.00795 -5.78576 -3.21663 0.81722 1.23652 2.39759 2.89815 3.09851 3.33570 3.38005 3.39320 3.70504 3.97407 4.37532 4.39732 4.47344 4.53227 4.57376 4.69600 4.86870 4.91682 4.95352 4.98236 5.08379 5.11206 5.11980 5.26309 5.28931 5.37064 5.40734 5.43592 5.45191 5.49882 5.56060 5.57921 5.60117 5.74849 5.77776 5.89175 5.99071 5.99760 6.09236 6.09868 6.24234 6.30676 6.35416 6.43140 6.52874 7.19377 7.29700 7.37612 7.47701 7.69113 7.82372 7.94689 8.19987 9.07313 9.67563 10.29653 11.25689 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.001700 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.162718 B =16469.858883 C =17586.288450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.105 4.105 4 C -0.141 4.141 5 C 0.514 3.486 6 O -0.542 6.542 7 N -0.724 5.724 8 C 0.177 3.823 9 C 0.132 3.868 10 C -0.192 4.192 11 C 0.182 3.818 12 O -0.296 6.296 13 C 0.066 3.934 14 H 0.081 0.919 15 C -0.136 4.136 16 C 0.152 3.848 17 N -0.600 5.600 18 C -0.228 4.228 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.922 5.922 22 Si 0.918 3.082 23 H -0.284 1.284 24 H -0.288 1.288 25 H -0.284 1.284 26 C 0.121 3.879 27 C -0.253 4.253 28 C 0.136 3.864 29 N -0.501 5.501 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.062 0.938 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.094 0.906 38 H 0.094 0.906 39 H 0.403 0.597 40 H 0.087 0.913 41 H 0.085 0.915 42 H 0.142 0.858 43 H 0.075 0.925 44 H 0.068 0.932 45 H 0.115 0.885 46 H 0.018 0.982 47 H 0.255 0.745 48 H 0.027 0.973 49 H 0.035 0.965 50 H 0.145 0.855 51 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.116 -2.105 9.913 24.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.181 4.181 5 C 0.301 3.699 6 O -0.419 6.419 7 N -0.376 5.376 8 C 0.053 3.947 9 C -0.005 4.005 10 C -0.214 4.214 11 C 0.127 3.873 12 O -0.205 6.205 13 C 0.010 3.990 14 H 0.099 0.901 15 C -0.175 4.175 16 C 0.027 3.973 17 N -0.327 5.327 18 C -0.356 4.356 19 H 0.096 0.904 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.748 3.252 23 H -0.210 1.210 24 H -0.214 1.214 25 H -0.211 1.211 26 C -0.006 4.006 27 C -0.274 4.274 28 C -0.020 4.020 29 N -0.214 5.214 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.237 0.763 40 H 0.105 0.895 41 H 0.103 0.897 42 H 0.159 0.841 43 H 0.094 0.906 44 H 0.087 0.913 45 H 0.133 0.867 46 H 0.036 0.964 47 H 0.066 0.934 48 H 0.045 0.955 49 H 0.053 0.947 50 H 0.163 0.837 51 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -22.990 -1.516 10.314 25.243 hybrid contribution 1.880 -0.957 -0.739 2.235 sum -21.110 -2.472 9.575 23.312 Atomic orbital electron populations 1.21759 0.95690 1.01555 1.02023 1.21555 0.96172 0.96561 1.02062 1.21380 0.92573 0.96664 1.03663 1.21714 0.98235 0.93574 1.04598 1.20772 0.81717 0.91939 0.75511 1.90710 1.55189 1.46575 1.49399 1.45986 1.07320 1.08475 1.75859 1.20038 0.86914 0.83985 1.03800 1.20813 0.95559 0.96112 0.88004 1.21288 0.91624 1.08360 1.00116 1.19402 0.91637 0.90163 0.86094 1.86178 1.21405 1.85596 1.27368 1.23844 0.75503 0.98721 1.00953 0.90141 1.23239 0.99723 0.98846 0.95650 1.22013 0.88735 0.83121 1.03381 1.44351 1.22606 1.06527 1.59241 1.19025 1.00568 0.88774 1.27225 0.90371 1.24804 0.98362 0.97043 1.00147 1.69735 1.28305 1.18900 1.40093 0.86105 0.80284 0.80848 0.77969 1.21034 1.21416 1.21103 1.21665 0.90060 0.93421 0.95453 1.22465 1.02680 1.09109 0.93123 1.22525 0.88840 0.92697 0.97959 1.67509 1.09951 1.15381 1.28604 0.92778 0.92675 0.92641 0.91925 0.91962 0.91186 0.91162 0.88759 0.88788 0.76251 0.89504 0.89702 0.84052 0.90646 0.91344 0.86727 0.96411 0.93439 0.95525 0.94695 0.83687 0.82305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.91 37.16 0.37 -0.47 16 2 C -0.13 -0.70 5.93 -26.73 -0.16 -0.86 16 3 C -0.10 -0.74 4.50 -26.73 -0.12 -0.87 16 4 C -0.14 -0.91 5.70 -27.88 -0.16 -1.07 16 5 C 0.51 5.00 7.83 -10.99 -0.09 4.92 16 6 O -0.54 -7.31 15.98 5.56 0.09 -7.22 16 7 N -0.72 -6.40 5.55 -61.48 -0.34 -6.75 16 8 C 0.18 1.75 5.98 -5.20 -0.03 1.72 16 9 C 0.13 1.47 6.14 -82.64 -0.51 0.97 16 10 C -0.19 -2.30 9.68 -39.30 -0.38 -2.68 16 11 C 0.18 2.50 6.72 -38.82 -0.26 2.24 16 12 O -0.30 -4.71 9.88 -18.94 -0.19 -4.90 16 13 C 0.07 1.11 2.75 -24.90 -0.07 1.04 16 14 H 0.08 1.24 6.32 -51.93 -0.33 0.91 16 15 C -0.14 -2.47 6.81 -24.58 -0.17 -2.64 16 16 C 0.15 3.51 5.89 -2.53 -0.01 3.49 16 17 N -0.60 -14.84 3.39 -170.08 -0.58 -15.41 16 18 C -0.23 -6.17 10.27 -15.06 -0.15 -6.32 16 19 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 20 C -0.01 -0.21 5.49 -17.43 -0.10 -0.31 16 21 N -0.92 -25.89 10.09 55.49 0.56 -25.33 16 22 Si 0.92 21.40 29.55 -169.99 -5.02 16.38 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 25 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 26 C 0.12 2.43 6.84 -3.07 -0.02 2.41 16 27 C -0.25 -3.15 8.98 -39.30 -0.35 -3.50 16 28 C 0.14 1.52 11.17 -17.59 -0.20 1.33 16 29 N -0.50 -5.98 10.27 -9.55 -0.10 -6.08 16 30 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.57 8.10 -51.93 -0.42 0.15 16 36 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 37 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.40 2.97 8.46 -40.82 -0.35 2.62 16 40 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 41 H 0.08 0.81 8.04 -51.93 -0.42 0.39 16 42 H 0.14 1.51 8.06 -52.49 -0.42 1.09 16 43 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 44 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 45 H 0.12 2.98 5.87 -51.93 -0.31 2.68 16 46 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 47 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 48 H 0.03 0.52 7.86 -51.93 -0.41 0.11 16 49 H 0.04 0.73 8.06 -51.93 -0.42 0.31 16 50 H 0.15 1.77 5.83 -52.49 -0.31 1.46 16 51 H 0.16 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 415.10 15.07 6.26 6.26 Total: -1.00 -31.48 415.10 -10.14 -41.63 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -8.41 Total: 2.03 kcal Atomic # 6 Polarization: 1.80 SS G_CDS: -2.41 Total: -0.61 kcal Atomic # 7 Polarization: -53.11 SS G_CDS: -0.46 Total: -53.57 kcal Atomic # 8 Polarization: -12.02 SS G_CDS: -0.10 Total: -12.11 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -31.48 -10.14 -41.63 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101091060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.918 kcal (2) G-P(sol) polarization free energy of solvation -31.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds