Wall clock time and date at job start Wed Apr 1 2020 05:14:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47097 * 2 1 4 4 C 1.53004 * 109.47064 * 180.02562 * 3 2 1 5 5 C 1.50698 * 109.47099 * 179.97438 * 4 3 2 6 6 O 1.21280 * 119.99946 * 359.97438 * 5 4 3 7 7 N 1.34771 * 119.99888 * 180.02562 * 5 4 3 8 8 C 1.46500 * 120.00013 * 180.02562 * 7 5 4 9 9 C 1.50696 * 109.47598 * 179.97438 * 8 7 5 10 10 C 1.37992 * 119.58823 * 94.99704 * 9 8 7 11 11 C 1.39248 * 119.08944 * 180.02562 * 10 9 8 12 12 O 1.35746 * 120.84509 * 179.97438 * 11 10 9 13 13 C 1.42898 * 116.99871 * 174.56861 * 12 11 10 14 14 H 1.08994 * 110.63967 * 327.10252 * 13 12 11 15 15 C 1.55156 * 110.71535 * 203.96438 * 13 12 11 16 16 C 1.54908 * 101.57913 * 206.13124 * 15 13 12 17 17 N 1.47420 * 104.83463 * 37.01293 * 16 15 13 18 18 C 1.36934 * 125.65150 * 155.83157 * 17 16 15 19 19 H 1.08008 * 120.00008 * 180.02562 * 18 17 16 20 20 C 1.38802 * 120.00167 * 0.02704 * 18 17 16 21 21 N 1.31623 * 120.00026 * 0.02562 * 20 18 17 22 22 Si 1.86807 * 120.00309 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46866 * 59.99909 * 22 20 18 24 24 H 1.48498 * 109.47300 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46883 * 300.00128 * 22 20 18 26 26 C 1.47026 * 108.69935 * 335.87214 * 17 16 15 27 27 C 1.39278 * 118.30800 * 0.25664 * 11 10 9 28 28 C 1.37955 * 119.09508 * 359.50023 * 27 11 10 29 29 N 1.31946 * 119.59111 * 275.02789 * 9 8 7 30 30 H 1.09000 * 109.46931 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46425 * 299.99652 * 1 2 3 32 32 H 1.08994 * 109.47583 * 59.99879 * 1 2 3 33 33 H 1.08999 * 109.46909 * 240.00245 * 2 1 3 34 34 H 1.09001 * 109.47501 * 120.00548 * 2 1 3 35 35 H 1.08999 * 109.47041 * 60.00326 * 3 2 1 36 36 H 1.08998 * 109.47013 * 299.99953 * 3 2 1 37 37 H 1.09003 * 109.46685 * 60.00209 * 4 3 2 38 38 H 1.09001 * 109.47275 * 300.00389 * 4 3 2 39 39 H 0.96995 * 120.00525 * 359.97438 * 7 5 4 40 40 H 1.09003 * 109.47338 * 59.99638 * 8 7 5 41 41 H 1.09001 * 109.47376 * 300.00259 * 8 7 5 42 42 H 1.07999 * 120.45837 * 0.02562 * 10 9 8 43 43 H 1.08994 * 111.00950 * 324.21006 * 15 13 12 44 44 H 1.09007 * 111.00540 * 88.06391 * 15 13 12 45 45 H 1.09001 * 110.36588 * 155.85056 * 16 15 13 46 46 H 1.09002 * 110.37204 * 278.05900 * 16 15 13 47 47 H 0.97002 * 119.99856 * 180.02562 * 21 20 18 48 48 H 1.09003 * 109.88041 * 241.64032 * 26 17 16 49 49 H 1.08995 * 109.88728 * 120.47640 * 26 17 16 50 50 H 1.08000 * 120.45450 * 179.72577 * 27 11 10 51 51 H 1.07998 * 119.59132 * 180.23189 * 28 27 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8633 -0.0013 6 8 3.2842 3.7851 -0.0017 7 7 5.3974 3.1096 -0.0024 8 6 5.8857 4.4908 -0.0025 9 6 7.3927 4.4908 -0.0032 10 6 8.0734 4.5956 -1.1990 11 6 9.4659 4.5941 -1.1877 12 8 10.1714 4.6947 -2.3430 13 6 11.5915 4.8051 -2.2284 14 1 11.8628 5.3491 -1.3237 15 6 12.1915 5.4928 -3.4831 16 6 13.6301 4.9184 -3.4944 17 7 13.4825 3.5219 -3.0456 18 6 14.3483 2.4983 -3.3242 19 1 14.1500 1.5057 -2.9474 20 6 15.4807 2.7363 -4.0908 21 7 15.7226 3.9460 -4.5495 22 14 16.6622 1.3400 -4.4703 23 1 15.9447 0.2723 -5.2121 24 1 17.7833 1.8515 -5.2989 25 1 17.1982 0.7863 -3.2008 26 6 12.2511 3.4102 -2.2500 27 6 10.1163 4.4806 0.0387 28 6 9.3636 4.3851 1.1909 29 7 8.0448 4.3902 1.1394 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3632 0.5138 0.8901 32 1 -0.3634 0.5138 -0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5139 0.8899 35 1 1.6767 1.9563 0.8900 36 1 1.6766 1.9563 -0.8900 37 1 3.9329 0.9288 -0.8909 38 1 3.9337 0.9285 0.8891 39 1 6.0277 2.3724 -0.0025 40 1 5.5232 5.0044 0.8880 41 1 5.5216 5.0049 -0.8919 42 1 7.5337 4.6776 -2.1308 43 1 11.6489 5.2052 -4.3835 44 1 12.2046 6.5765 -3.3661 45 1 14.0438 4.9511 -4.5024 46 1 14.2663 5.4747 -2.8060 47 1 16.5138 4.1122 -5.0855 48 1 12.4933 3.0989 -1.2339 49 1 11.5766 2.6883 -2.7103 50 1 11.1951 4.4713 0.0874 51 1 9.8597 4.3006 2.1465 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001101091060.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:51 Heat of formation + Delta-G solvation = -47.805308 kcal Electronic energy + Delta-G solvation = -29194.002609 eV Core-core repulsion = 25093.082836 eV Total energy + Delta-G solvation = -4100.919774 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.88712 -40.78552 -39.97493 -38.05368 -36.42180 -35.85787 -34.40428 -32.85434 -32.43495 -31.32709 -31.10395 -29.28747 -27.92626 -26.56637 -25.23906 -24.55099 -23.36659 -22.18014 -22.02546 -21.60954 -21.27219 -19.37281 -19.08182 -18.06972 -17.73876 -17.13599 -17.03818 -16.91113 -16.66759 -16.59917 -16.05421 -15.65181 -15.60486 -15.26135 -14.90854 -14.65205 -14.58313 -14.37374 -14.21397 -14.13977 -14.09229 -13.67183 -13.40534 -13.29424 -13.21250 -12.98957 -12.73185 -12.55322 -12.20068 -12.17698 -12.09426 -12.06358 -11.97243 -11.84581 -11.77681 -11.45781 -11.42824 -11.02492 -10.78402 -10.63836 -10.19008 -10.16001 -9.90325 -8.97083 -7.82228 -5.27790 -0.08995 0.25888 1.47053 1.49531 1.56089 1.64862 1.89385 2.16928 2.47562 2.81156 3.12568 3.29034 3.48194 3.59485 3.72214 3.75929 3.80845 3.87367 3.95059 3.96402 4.08024 4.10167 4.11601 4.36873 4.41622 4.49230 4.52184 4.58544 4.64712 4.67191 4.71459 4.77669 4.82062 4.82469 4.92298 4.96191 4.97955 5.02498 5.08988 5.13384 5.28296 5.34739 5.41061 5.41340 5.47018 5.52888 5.53576 5.72602 6.19633 6.26158 6.49178 6.91700 7.04987 7.21680 7.70376 8.32258 9.19610 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014693 B = 0.001700 C = 0.001592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1905.162718 B =16469.858883 C =17586.288450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.103 4.103 4 C -0.135 4.135 5 C 0.511 3.489 6 O -0.585 6.585 7 N -0.716 5.716 8 C 0.180 3.820 9 C 0.139 3.861 10 C -0.191 4.191 11 C 0.159 3.841 12 O -0.305 6.305 13 C 0.084 3.916 14 H 0.102 0.898 15 C -0.124 4.124 16 C 0.154 3.846 17 N -0.623 5.623 18 C -0.246 4.246 19 H 0.081 0.919 20 C -0.061 4.061 21 N -0.946 5.946 22 Si 0.981 3.019 23 H -0.278 1.278 24 H -0.292 1.292 25 H -0.277 1.277 26 C 0.119 3.881 27 C -0.255 4.255 28 C 0.139 3.861 29 N -0.509 5.509 30 H 0.062 0.938 31 H 0.050 0.950 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.054 0.946 36 H 0.053 0.947 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.413 0.587 40 H 0.079 0.921 41 H 0.089 0.911 42 H 0.152 0.848 43 H 0.070 0.930 44 H 0.098 0.902 45 H 0.081 0.919 46 H 0.003 0.997 47 H 0.250 0.750 48 H 0.037 0.963 49 H 0.026 0.974 50 H 0.148 0.852 51 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.875 -3.198 11.085 25.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.141 4.141 4 C -0.174 4.174 5 C 0.300 3.700 6 O -0.465 6.465 7 N -0.369 5.369 8 C 0.056 3.944 9 C 0.002 3.998 10 C -0.212 4.212 11 C 0.105 3.895 12 O -0.216 6.216 13 C 0.028 3.972 14 H 0.120 0.880 15 C -0.162 4.162 16 C 0.029 3.971 17 N -0.350 5.350 18 C -0.374 4.374 19 H 0.099 0.901 20 C -0.254 4.254 21 N -0.595 5.595 22 Si 0.809 3.191 23 H -0.204 1.204 24 H -0.218 1.218 25 H -0.203 1.203 26 C -0.007 4.007 27 C -0.276 4.276 28 C -0.017 4.017 29 N -0.223 5.223 30 H 0.081 0.919 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.133 0.867 38 H 0.133 0.867 39 H 0.248 0.752 40 H 0.097 0.903 41 H 0.107 0.893 42 H 0.169 0.831 43 H 0.088 0.912 44 H 0.116 0.884 45 H 0.099 0.901 46 H 0.021 0.979 47 H 0.059 0.941 48 H 0.055 0.945 49 H 0.044 0.956 50 H 0.165 0.835 51 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -23.767 -2.631 11.511 26.538 hybrid contribution 2.026 -0.620 -1.032 2.357 sum -21.741 -3.251 10.479 24.353 Atomic orbital electron populations 1.21786 0.95880 1.01987 1.01653 1.21531 0.96026 0.95433 1.02913 1.21339 0.93192 0.97443 1.02154 1.21754 0.97555 0.91538 1.06561 1.21368 0.81445 0.92863 0.74367 1.90695 1.56193 1.48112 1.51459 1.45938 1.07387 1.08340 1.75213 1.19963 0.86152 0.84673 1.03654 1.20903 0.95908 0.95362 0.87608 1.21412 0.91063 1.07878 1.00866 1.19638 0.92178 0.91770 0.85886 1.86138 1.20428 1.86331 1.28655 1.23508 0.76260 0.96455 1.00970 0.88041 1.23034 0.96398 1.00475 0.96302 1.21779 0.91513 0.82901 1.00897 1.44628 1.23622 1.06643 1.60113 1.19386 1.01237 0.89673 1.27118 0.90148 1.25622 1.00064 0.99328 1.00388 1.69983 1.28418 1.20501 1.40619 0.85117 0.78022 0.78183 0.77774 1.20407 1.21761 1.20323 1.21777 0.88445 0.95484 0.94968 1.22549 1.02904 1.09076 0.93065 1.22957 0.88524 0.91457 0.98737 1.67579 1.10432 1.15421 1.28865 0.91914 0.93038 0.93106 0.91089 0.90990 0.92722 0.92769 0.86687 0.86655 0.75157 0.90287 0.89322 0.83062 0.91176 0.88364 0.90089 0.97936 0.94054 0.94502 0.95646 0.83451 0.79537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.57 9.91 71.98 0.71 -0.85 16 2 C -0.12 -1.15 5.93 30.59 0.18 -0.97 16 3 C -0.10 -1.38 4.50 30.60 0.14 -1.24 16 4 C -0.13 -1.47 5.70 29.85 0.17 -1.30 16 5 C 0.51 9.37 7.83 87.66 0.69 10.05 16 6 O -0.58 -15.72 15.98 -3.03 -0.05 -15.77 16 7 N -0.72 -11.49 5.55 -466.80 -2.59 -14.08 16 8 C 0.18 3.33 5.98 85.63 0.51 3.84 16 9 C 0.14 2.84 6.14 42.48 0.26 3.10 16 10 C -0.19 -4.20 9.68 22.45 0.22 -3.99 16 11 C 0.16 4.07 6.72 22.76 0.15 4.22 16 12 O -0.30 -9.21 9.88 -90.70 -0.90 -10.11 16 13 C 0.08 2.73 2.75 31.78 0.09 2.81 16 14 H 0.10 2.88 6.32 -2.39 -0.02 2.86 16 15 C -0.12 -4.38 6.81 31.99 0.22 -4.17 16 16 C 0.15 7.20 5.89 86.86 0.51 7.71 16 17 N -0.62 -31.04 3.39 -692.01 -2.35 -33.39 16 18 C -0.25 -13.41 10.27 84.03 0.86 -12.55 16 19 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 20 C -0.06 -3.36 5.49 84.86 0.47 -2.89 16 21 N -0.95 -54.36 10.09 21.65 0.22 -54.14 16 22 Si 0.98 44.23 29.55 68.60 2.03 46.26 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 H -0.29 -13.18 7.11 99.48 0.71 -12.47 16 25 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 26 C 0.12 4.72 6.84 86.73 0.59 5.31 16 27 C -0.26 -5.77 8.98 22.45 0.20 -5.57 16 28 C 0.14 2.75 11.17 84.60 0.95 3.69 16 29 N -0.51 -10.99 10.27 -184.12 -1.89 -12.88 16 30 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 33 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 34 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 36 H 0.05 0.89 8.10 -2.39 -0.02 0.87 16 37 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 39 H 0.41 5.14 8.46 -92.71 -0.78 4.35 16 40 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 41 H 0.09 1.59 8.04 -2.39 -0.02 1.57 16 42 H 0.15 2.97 8.06 -2.91 -0.02 2.94 16 43 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 45 H 0.08 4.36 5.87 -2.39 -0.01 4.34 16 46 H 0.00 0.13 8.14 -2.39 -0.02 0.11 16 47 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 48 H 0.04 1.39 7.86 -2.39 -0.02 1.37 16 49 H 0.03 1.06 8.06 -2.39 -0.02 1.04 16 50 H 0.15 3.25 5.83 -2.91 -0.02 3.23 16 51 H 0.19 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -69.00 415.10 1.53 -67.47 By element: Atomic # 1 Polarization: 19.27 SS G_CDS: 0.14 Total: 19.41 kcal Atomic # 6 Polarization: 0.31 SS G_CDS: 6.92 Total: 7.23 kcal Atomic # 7 Polarization: -107.88 SS G_CDS: -6.61 Total: -114.49 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.94 Total: -25.87 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -69.00 1.53 -67.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001101091060.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.668 kcal (2) G-P(sol) polarization free energy of solvation -69.003 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.529 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds