Wall clock time and date at job start Wed Apr 1 2020 04:23:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47348 * 73.34697 * 3 2 1 5 5 C 1.53001 * 109.47409 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47268 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46884 * 180.02562 * 6 5 4 8 8 O 1.21276 * 120.00062 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99645 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99815 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.54882 * 36.41406 * 10 9 7 12 12 C 1.54838 * 110.61343 * 273.54321 * 10 9 7 13 13 C 1.55849 * 103.51653 * 241.33394 * 12 10 9 14 14 H 1.09008 * 115.57683 * 158.89362 * 13 12 10 15 15 C 1.55847 * 105.03576 * 288.27220 * 13 12 10 16 16 C 1.54829 * 103.52012 * 71.73214 * 15 13 12 17 17 C 1.55846 * 103.51951 * 359.97438 * 16 15 13 18 18 H 1.08999 * 116.15369 * 159.22620 * 17 16 15 19 19 N 1.50649 * 101.02729 * 32.99498 * 17 16 15 20 20 C 1.46904 * 111.00196 * 189.76174 * 19 17 16 21 21 C 1.50697 * 109.46892 * 177.96316 * 20 19 17 22 22 O 1.21291 * 120.00763 * 359.72740 * 21 20 19 23 23 N 1.34784 * 119.99774 * 179.97438 * 21 20 19 24 24 C 1.37092 * 119.99968 * 179.72830 * 23 21 20 25 25 H 1.08005 * 120.00127 * 359.97438 * 24 23 21 26 26 C 1.38955 * 120.00107 * 179.97438 * 24 23 21 27 27 N 1.31413 * 119.99828 * 0.02562 * 26 24 23 28 28 Si 1.86794 * 120.00407 * 179.97438 * 26 24 23 29 29 H 1.48504 * 109.46887 * 0.02562 * 28 26 24 30 30 H 1.48501 * 109.47066 * 120.00183 * 28 26 24 31 31 H 1.48499 * 109.47339 * 240.00683 * 28 26 24 32 32 H 4.44646 * 5.63451 * 180.02562 * 4 1 2 33 33 H 1.08999 * 109.47129 * 313.34091 * 3 2 1 34 34 H 1.09005 * 109.46309 * 193.34437 * 3 2 1 35 35 H 1.08999 * 109.47500 * 59.99621 * 4 3 2 36 36 H 1.09004 * 109.47148 * 299.99747 * 4 3 2 37 37 H 1.08999 * 109.46797 * 59.99560 * 5 4 3 38 38 H 1.08996 * 109.47164 * 299.99901 * 5 4 3 39 39 H 1.08993 * 109.47174 * 59.99784 * 6 5 4 40 40 H 1.09001 * 109.46667 * 300.00091 * 6 5 4 41 41 H 0.97003 * 120.00193 * 359.97438 * 9 7 6 42 42 H 1.09004 * 110.61008 * 122.82982 * 12 10 9 43 43 H 1.08989 * 110.74498 * 359.90728 * 12 10 9 44 44 H 1.08997 * 110.61284 * 190.24187 * 15 13 12 45 45 H 1.09003 * 110.61342 * 313.22079 * 15 13 12 46 46 H 1.09007 * 110.61142 * 241.49411 * 16 15 13 47 47 H 1.08997 * 110.75212 * 118.57265 * 16 15 13 48 48 H 1.09001 * 109.46900 * 57.96976 * 20 19 17 49 49 H 1.08993 * 109.47169 * 297.96696 * 20 19 17 50 50 H 0.97005 * 119.99846 * 359.72750 * 23 21 20 51 51 H 0.96990 * 120.00373 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.4125 -1.3819 5 6 4.6862 -0.4112 -1.3821 6 6 5.1964 -0.8250 -2.7639 7 6 6.7035 -0.8243 -2.7638 8 8 7.3097 -0.5221 -1.7579 9 7 7.3775 -1.1584 -3.8821 10 6 8.8424 -1.1572 -3.8822 11 1 9.2254 -1.5018 -2.9216 12 6 9.3864 0.2546 -4.2113 13 6 10.1951 0.0362 -5.5255 14 1 10.3654 0.9291 -6.1271 15 6 11.4673 -0.7522 -5.0911 16 6 10.9234 -2.1640 -4.7621 17 6 9.3951 -2.0398 -5.0410 18 1 8.8614 -2.9738 -5.2168 19 7 9.3893 -1.0546 -6.1807 20 6 8.0245 -0.5973 -6.4743 21 6 8.0641 0.4220 -7.5836 22 8 9.1253 0.7402 -8.0774 23 7 6.9207 0.9838 -8.0237 24 6 6.9573 1.9151 -9.0291 25 1 7.9023 2.1990 -9.4681 26 6 5.7784 2.4939 -9.4832 27 7 4.6286 2.1489 -8.9486 28 14 5.8282 3.7635 -10.8525 29 1 7.2345 3.9755 -11.2800 30 1 5.0283 3.2790 -12.0060 31 1 5.2615 5.0449 -10.3604 32 1 -1.0500 0.0001 -0.0003 33 1 3.0096 -0.7045 0.7474 34 1 3.0087 1.0008 0.2372 35 1 2.7926 0.2927 -2.1293 36 1 2.7934 -1.4126 -1.6192 37 1 5.0502 -1.1161 -0.6347 38 1 5.0487 0.5890 -1.1451 39 1 4.8324 -0.1204 -3.5116 40 1 4.8339 -1.8253 -3.0005 41 1 6.8926 -1.3998 -4.6868 42 1 10.0390 0.6099 -3.4137 43 1 8.5677 0.9549 -4.3763 44 1 12.1872 -0.7991 -5.9081 45 1 11.9168 -0.2987 -4.2077 46 1 11.1033 -2.4103 -3.7156 47 1 11.3732 -2.9128 -5.4141 48 1 7.5927 -0.1456 -5.5812 49 1 7.4152 -1.4466 -6.7829 50 1 6.0720 0.7291 -7.6291 51 1 3.8057 2.5526 -9.2658 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001110459516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:52 Heat of formation + Delta-G solvation = 0.094997 kcal Electronic energy + Delta-G solvation = -30904.172584 eV Core-core repulsion = 26805.329923 eV Total energy + Delta-G solvation = -4098.842661 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.36884 -39.30854 -37.84613 -36.33911 -34.35599 -33.96804 -33.36277 -31.96366 -31.15271 -30.38418 -29.59848 -28.55146 -26.52884 -25.26464 -24.17116 -22.35825 -21.32402 -20.72011 -20.31613 -19.73509 -18.82433 -18.27392 -17.83783 -17.21210 -16.57931 -16.30570 -15.99767 -15.54118 -15.03527 -14.89446 -14.71596 -14.47978 -14.37744 -13.92539 -13.83378 -13.42384 -13.34112 -13.02973 -12.87855 -12.31498 -12.16564 -12.05238 -11.95482 -11.90261 -11.74727 -11.49939 -11.46277 -11.42153 -11.31038 -11.15272 -10.96203 -10.88643 -10.59600 -10.42902 -10.36542 -10.31170 -10.31082 -10.24912 -9.75228 -9.53576 -9.07713 -8.56832 -8.11672 -7.98363 -6.44697 -3.85136 2.58146 2.59509 2.62561 3.08815 3.14320 3.25247 3.32112 3.82637 3.90041 4.11635 4.17909 4.55466 4.63163 4.64309 4.70175 4.72855 4.74642 5.02674 5.07389 5.11179 5.17165 5.19805 5.26225 5.29561 5.32029 5.39106 5.47935 5.50049 5.54717 5.55963 5.58443 5.68946 5.75467 5.76558 5.82212 5.85564 5.98662 6.02525 6.05776 6.13858 6.15890 6.23424 6.26487 6.42841 6.51754 6.83565 7.15746 7.39837 7.40470 7.52879 8.03444 8.16580 8.58533 9.15758 9.51091 10.02911 10.73145 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006174 B = 0.003377 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4534.021201 B = 8288.710572 C =12359.582031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.184 4.184 3 C -0.014 4.014 4 C -0.116 4.116 5 C -0.102 4.102 6 C -0.145 4.145 7 C 0.513 3.487 8 O -0.543 6.543 9 N -0.727 5.727 10 C 0.113 3.887 11 H 0.094 0.906 12 C -0.165 4.165 13 C 0.059 3.941 14 H 0.128 0.872 15 C -0.116 4.116 16 C -0.108 4.108 17 C 0.034 3.966 18 H 0.116 0.884 19 N -0.463 5.463 20 C 0.005 3.995 21 C 0.447 3.553 22 O -0.577 6.577 23 N -0.565 5.565 24 C -0.297 4.297 25 H 0.103 0.897 26 C 0.022 3.978 27 N -0.902 5.902 28 Si 0.928 3.072 29 H -0.268 1.268 30 H -0.281 1.281 31 H -0.282 1.282 32 H 0.216 0.784 33 H 0.086 0.914 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.070 0.930 38 H 0.072 0.928 39 H 0.099 0.901 40 H 0.094 0.906 41 H 0.403 0.597 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.073 0.927 45 H 0.066 0.934 46 H 0.068 0.932 47 H 0.075 0.925 48 H 0.071 0.929 49 H 0.085 0.915 50 H 0.390 0.610 51 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.717 -9.323 15.923 18.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.184 4.184 3 C -0.051 4.051 4 C -0.154 4.154 5 C -0.140 4.140 6 C -0.185 4.185 7 C 0.300 3.700 8 O -0.420 6.420 9 N -0.381 5.381 10 C 0.007 3.993 11 H 0.112 0.888 12 C -0.205 4.205 13 C -0.049 4.049 14 H 0.146 0.854 15 C -0.154 4.154 16 C -0.146 4.146 17 C -0.076 4.076 18 H 0.134 0.866 19 N -0.186 5.186 20 C -0.127 4.127 21 C 0.232 3.768 22 O -0.461 6.461 23 N -0.202 5.202 24 C -0.427 4.427 25 H 0.121 0.879 26 C -0.179 4.179 27 N -0.544 5.544 28 Si 0.755 3.245 29 H -0.192 1.192 30 H -0.207 1.207 31 H -0.208 1.208 32 H 0.233 0.767 33 H 0.105 0.895 34 H 0.106 0.894 35 H 0.089 0.911 36 H 0.086 0.914 37 H 0.089 0.911 38 H 0.091 0.909 39 H 0.117 0.883 40 H 0.112 0.888 41 H 0.241 0.759 42 H 0.094 0.906 43 H 0.091 0.909 44 H 0.092 0.908 45 H 0.085 0.915 46 H 0.086 0.914 47 H 0.094 0.906 48 H 0.088 0.912 49 H 0.103 0.897 50 H 0.223 0.777 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.471 -9.042 15.671 18.099 hybrid contribution -1.682 0.723 -0.166 1.838 sum -1.210 -8.319 15.505 17.637 Atomic orbital electron populations 1.24916 0.96010 1.01450 1.00937 1.23226 0.94674 1.00170 1.00360 1.18763 0.84520 1.03135 0.98673 1.21575 0.95291 1.02373 0.96135 1.21321 0.93960 1.03139 0.95601 1.21728 0.91762 1.04391 1.00632 1.20805 0.90346 0.76028 0.82838 1.90680 1.70623 1.47719 1.32942 1.46584 1.07240 1.70013 1.14290 1.22834 0.79466 0.96325 1.00705 0.88753 1.23779 1.00968 0.96593 0.99138 1.24526 0.92990 0.95795 0.91626 0.85413 1.22613 0.97190 0.94822 1.00791 1.22484 0.93177 0.98075 1.00863 1.24813 0.97304 0.96647 0.88808 0.86611 1.67502 1.10325 1.08824 1.31900 1.22503 0.92030 0.99130 0.99062 1.19652 0.85084 0.85500 0.86580 1.90512 1.29825 1.65181 1.60581 1.41849 1.07174 1.37296 1.33850 1.19733 0.95021 1.16021 1.11884 0.87916 1.25236 0.94688 0.98920 0.99051 1.69605 0.97947 1.43969 1.42841 0.85824 0.78583 0.79843 0.80265 1.19244 1.20745 1.20777 0.76748 0.89539 0.89407 0.91144 0.91443 0.91082 0.90886 0.88310 0.88799 0.75897 0.90563 0.90923 0.90838 0.91491 0.91376 0.90631 0.91168 0.89683 0.77676 0.91959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.94 19.25 29.55 0.57 -1.37 16 2 C -0.18 -1.81 13.34 -37.12 -0.50 -2.30 16 3 C -0.01 -0.12 5.70 -29.52 -0.17 -0.28 16 4 C -0.12 -0.94 5.17 -26.73 -0.14 -1.08 16 5 C -0.10 -0.92 4.50 -26.73 -0.12 -1.04 16 6 C -0.15 -1.34 5.70 -27.88 -0.16 -1.50 16 7 C 0.51 6.30 7.83 -10.99 -0.09 6.21 16 8 O -0.54 -8.46 15.70 5.56 0.09 -8.38 16 9 N -0.73 -8.34 3.88 -51.43 -0.20 -8.54 16 10 C 0.11 1.38 2.52 -65.47 -0.17 1.21 16 11 H 0.09 1.19 7.36 -51.93 -0.38 0.81 16 12 C -0.16 -2.31 5.49 -24.24 -0.13 -2.44 16 13 C 0.06 0.90 4.27 -62.58 -0.27 0.64 16 14 H 0.13 2.37 6.92 -51.92 -0.36 2.02 16 15 C -0.12 -1.42 6.43 -24.25 -0.16 -1.57 16 16 C -0.11 -1.15 6.44 -24.25 -0.16 -1.30 16 17 C 0.03 0.40 4.65 -62.59 -0.29 0.11 16 18 H 0.12 1.19 8.14 -51.93 -0.42 0.76 16 19 N -0.46 -7.26 5.30 -207.07 -1.10 -8.36 16 20 C 0.00 0.08 4.01 -4.98 -0.02 0.06 16 21 C 0.45 10.16 7.59 -10.98 -0.08 10.08 16 22 O -0.58 -15.19 14.42 5.55 0.08 -15.11 16 23 N -0.56 -13.80 5.29 -10.96 -0.06 -13.86 16 24 C -0.30 -8.10 9.68 -14.93 -0.14 -8.25 16 25 H 0.10 2.97 7.16 -52.48 -0.38 2.59 16 26 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 27 N -0.90 -23.93 13.05 55.50 0.72 -23.20 16 28 Si 0.93 20.80 29.55 -169.99 -5.02 15.78 16 29 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 30 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 31 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 32 H 0.22 1.22 7.80 -54.09 -0.42 0.80 16 33 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 38 H 0.07 0.74 8.10 -51.93 -0.42 0.32 16 39 H 0.10 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.40 4.15 6.28 -40.82 -0.26 3.89 16 42 H 0.08 1.01 7.82 -51.93 -0.41 0.60 16 43 H 0.07 1.16 7.06 -51.94 -0.37 0.80 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.07 0.71 7.82 -51.93 -0.41 0.31 16 46 H 0.07 0.62 7.82 -51.93 -0.41 0.21 16 47 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.07 1.08 3.54 -51.93 -0.18 0.89 16 49 H 0.09 1.25 8.00 -51.93 -0.42 0.83 16 50 H 0.39 9.04 7.90 -40.82 -0.32 8.72 16 51 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 409.83 15.07 6.18 6.18 Total: -1.00 -33.08 409.83 -9.50 -42.59 By element: Atomic # 1 Polarization: 23.33 SS G_CDS: -8.08 Total: 15.25 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -2.11 Total: -2.35 kcal Atomic # 7 Polarization: -53.33 SS G_CDS: -0.63 Total: -53.96 kcal Atomic # 8 Polarization: -23.65 SS G_CDS: 0.17 Total: -23.49 kcal Atomic # 14 Polarization: 20.80 SS G_CDS: -5.02 Total: 15.78 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -33.08 -9.50 -42.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110459516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.681 kcal (2) G-P(sol) polarization free energy of solvation -33.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds