Wall clock time and date at job start Wed Apr 1 2020 04:23:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 C 1.52993 * 109.47348 * 73.34697 * 3 2 1 5 5 C 1.53001 * 109.47409 * 179.97438 * 4 3 2 6 6 C 1.53001 * 109.47268 * 179.97438 * 5 4 3 7 7 C 1.50702 * 109.46884 * 180.02562 * 6 5 4 8 8 O 1.21276 * 120.00062 * 359.97438 * 7 6 5 9 9 N 1.34771 * 119.99645 * 180.02562 * 7 6 5 10 10 C 1.46500 * 119.99815 * 179.97438 * 9 7 6 11 11 H 1.09000 * 110.54882 * 36.41406 * 10 9 7 12 12 C 1.54838 * 110.61343 * 273.54321 * 10 9 7 13 13 C 1.55849 * 103.51653 * 241.33394 * 12 10 9 14 14 H 1.09008 * 115.57683 * 158.89362 * 13 12 10 15 15 C 1.55847 * 105.03576 * 288.27220 * 13 12 10 16 16 C 1.54829 * 103.52012 * 71.73214 * 15 13 12 17 17 C 1.55846 * 103.51951 * 359.97438 * 16 15 13 18 18 H 1.08999 * 116.15369 * 159.22620 * 17 16 15 19 19 N 1.50649 * 101.02729 * 32.99498 * 17 16 15 20 20 C 1.46904 * 111.00196 * 189.76174 * 19 17 16 21 21 C 1.50697 * 109.46892 * 177.96316 * 20 19 17 22 22 O 1.21291 * 120.00763 * 359.72740 * 21 20 19 23 23 N 1.34784 * 119.99774 * 179.97438 * 21 20 19 24 24 C 1.37092 * 119.99968 * 179.72830 * 23 21 20 25 25 H 1.08005 * 120.00127 * 359.97438 * 24 23 21 26 26 C 1.38955 * 120.00107 * 179.97438 * 24 23 21 27 27 N 1.31413 * 119.99828 * 0.02562 * 26 24 23 28 28 Si 1.86794 * 120.00407 * 179.97438 * 26 24 23 29 29 H 1.48504 * 109.46887 * 0.02562 * 28 26 24 30 30 H 1.48501 * 109.47066 * 120.00183 * 28 26 24 31 31 H 1.48499 * 109.47339 * 240.00683 * 28 26 24 32 32 H 4.44646 * 5.63451 * 180.02562 * 4 1 2 33 33 H 1.08999 * 109.47129 * 313.34091 * 3 2 1 34 34 H 1.09005 * 109.46309 * 193.34437 * 3 2 1 35 35 H 1.08999 * 109.47500 * 59.99621 * 4 3 2 36 36 H 1.09004 * 109.47148 * 299.99747 * 4 3 2 37 37 H 1.08999 * 109.46797 * 59.99560 * 5 4 3 38 38 H 1.08996 * 109.47164 * 299.99901 * 5 4 3 39 39 H 1.08993 * 109.47174 * 59.99784 * 6 5 4 40 40 H 1.09001 * 109.46667 * 300.00091 * 6 5 4 41 41 H 0.97003 * 120.00193 * 359.97438 * 9 7 6 42 42 H 1.09004 * 110.61008 * 122.82982 * 12 10 9 43 43 H 1.08989 * 110.74498 * 359.90728 * 12 10 9 44 44 H 1.08997 * 110.61284 * 190.24187 * 15 13 12 45 45 H 1.09003 * 110.61342 * 313.22079 * 15 13 12 46 46 H 1.09007 * 110.61142 * 241.49411 * 16 15 13 47 47 H 1.08997 * 110.75212 * 118.57265 * 16 15 13 48 48 H 1.09001 * 109.46900 * 57.96976 * 20 19 17 49 49 H 1.08993 * 109.47169 * 297.96696 * 20 19 17 50 50 H 0.97005 * 119.99846 * 359.72750 * 23 21 20 51 51 H 0.96990 * 120.00373 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1562 -0.4125 -1.3819 5 6 4.6862 -0.4112 -1.3821 6 6 5.1964 -0.8250 -2.7639 7 6 6.7035 -0.8243 -2.7638 8 8 7.3097 -0.5221 -1.7579 9 7 7.3775 -1.1584 -3.8821 10 6 8.8424 -1.1572 -3.8822 11 1 9.2254 -1.5018 -2.9216 12 6 9.3864 0.2546 -4.2113 13 6 10.1951 0.0362 -5.5255 14 1 10.3654 0.9291 -6.1271 15 6 11.4673 -0.7522 -5.0911 16 6 10.9234 -2.1640 -4.7621 17 6 9.3951 -2.0398 -5.0410 18 1 8.8614 -2.9738 -5.2168 19 7 9.3893 -1.0546 -6.1807 20 6 8.0245 -0.5973 -6.4743 21 6 8.0641 0.4220 -7.5836 22 8 9.1253 0.7402 -8.0774 23 7 6.9207 0.9838 -8.0237 24 6 6.9573 1.9151 -9.0291 25 1 7.9023 2.1990 -9.4681 26 6 5.7784 2.4939 -9.4832 27 7 4.6286 2.1489 -8.9486 28 14 5.8282 3.7635 -10.8525 29 1 7.2345 3.9755 -11.2800 30 1 5.0283 3.2790 -12.0060 31 1 5.2615 5.0449 -10.3604 32 1 -1.0500 0.0001 -0.0003 33 1 3.0096 -0.7045 0.7474 34 1 3.0087 1.0008 0.2372 35 1 2.7926 0.2927 -2.1293 36 1 2.7934 -1.4126 -1.6192 37 1 5.0502 -1.1161 -0.6347 38 1 5.0487 0.5890 -1.1451 39 1 4.8324 -0.1204 -3.5116 40 1 4.8339 -1.8253 -3.0005 41 1 6.8926 -1.3998 -4.6868 42 1 10.0390 0.6099 -3.4137 43 1 8.5677 0.9549 -4.3763 44 1 12.1872 -0.7991 -5.9081 45 1 11.9168 -0.2987 -4.2077 46 1 11.1033 -2.4103 -3.7156 47 1 11.3732 -2.9128 -5.4141 48 1 7.5927 -0.1456 -5.5812 49 1 7.4152 -1.4466 -6.7829 50 1 6.0720 0.7291 -7.6291 51 1 3.8057 2.5526 -9.2658 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001110459516.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:23:51 Heat of formation + Delta-G solvation = -22.205266 kcal Electronic energy + Delta-G solvation = -30905.139596 eV Core-core repulsion = 26805.329923 eV Total energy + Delta-G solvation = -4099.809673 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.47901 -40.36437 -39.63693 -37.03239 -35.96538 -35.35136 -34.08298 -33.44427 -32.93579 -31.18232 -30.63978 -29.51341 -28.08823 -26.17296 -25.79094 -23.25404 -22.11352 -21.75260 -21.72797 -20.71769 -20.44526 -19.72507 -18.90836 -18.22783 -17.61803 -17.47862 -17.15752 -16.79064 -16.48637 -16.22155 -15.80561 -15.75030 -15.52325 -15.17226 -15.02578 -14.63150 -14.38332 -14.18986 -13.82929 -13.67017 -13.55579 -13.26730 -13.11357 -13.00991 -12.85633 -12.71221 -12.56966 -12.53425 -12.39783 -12.31341 -12.17200 -12.13235 -12.06413 -11.70966 -11.59777 -11.47936 -11.31714 -11.12429 -10.96740 -10.73412 -10.31357 -10.09609 -9.99195 -9.46319 -8.46544 -5.94044 1.35278 1.40981 1.54156 1.63579 1.88331 1.93507 2.06645 2.17987 2.27903 2.71706 3.19953 3.26814 3.48657 3.61096 3.67558 3.74964 3.83938 3.99550 4.05211 4.09503 4.16686 4.20810 4.30363 4.39324 4.42538 4.44468 4.48990 4.51948 4.54032 4.63979 4.71395 4.74755 4.79722 4.85297 4.91772 4.94495 5.06854 5.10378 5.20939 5.22436 5.25839 5.32222 5.34381 5.41586 5.43155 5.50654 5.72325 5.86224 6.08155 6.47677 6.61617 6.72885 7.14324 7.22405 7.57497 8.14065 8.70868 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.006174 B = 0.003377 C = 0.002265 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4534.021201 B = 8288.710572 C =12359.582031 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.217 4.217 3 C -0.016 4.016 4 C -0.107 4.107 5 C -0.097 4.097 6 C -0.142 4.142 7 C 0.510 3.490 8 O -0.578 6.578 9 N -0.722 5.722 10 C 0.120 3.880 11 H 0.100 0.900 12 C -0.158 4.158 13 C 0.048 3.952 14 H 0.083 0.917 15 C -0.111 4.111 16 C -0.101 4.101 17 C 0.044 3.956 18 H 0.142 0.858 19 N -0.485 5.485 20 C 0.020 3.980 21 C 0.442 3.558 22 O -0.618 6.618 23 N -0.573 5.573 24 C -0.330 4.330 25 H 0.075 0.925 26 C -0.010 4.010 27 N -0.917 5.917 28 Si 0.987 3.013 29 H -0.276 1.276 30 H -0.270 1.270 31 H -0.272 1.272 32 H 0.241 0.759 33 H 0.097 0.903 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.102 0.898 40 H 0.121 0.879 41 H 0.411 0.589 42 H 0.082 0.918 43 H 0.045 0.955 44 H 0.064 0.936 45 H 0.083 0.917 46 H 0.093 0.907 47 H 0.084 0.916 48 H 0.085 0.915 49 H 0.113 0.887 50 H 0.396 0.604 51 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.680 -11.116 16.768 20.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.217 4.217 3 C -0.053 4.053 4 C -0.145 4.145 5 C -0.135 4.135 6 C -0.181 4.181 7 C 0.299 3.701 8 O -0.458 6.458 9 N -0.376 5.376 10 C 0.014 3.986 11 H 0.118 0.882 12 C -0.198 4.198 13 C -0.061 4.061 14 H 0.101 0.899 15 C -0.149 4.149 16 C -0.139 4.139 17 C -0.064 4.064 18 H 0.160 0.840 19 N -0.208 5.208 20 C -0.112 4.112 21 C 0.230 3.770 22 O -0.504 6.504 23 N -0.211 5.211 24 C -0.460 4.460 25 H 0.093 0.907 26 C -0.210 4.210 27 N -0.558 5.558 28 Si 0.812 3.188 29 H -0.201 1.201 30 H -0.195 1.195 31 H -0.197 1.197 32 H 0.257 0.743 33 H 0.115 0.885 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.120 0.880 40 H 0.139 0.861 41 H 0.250 0.750 42 H 0.101 0.899 43 H 0.064 0.936 44 H 0.083 0.917 45 H 0.102 0.898 46 H 0.112 0.888 47 H 0.103 0.897 48 H 0.102 0.898 49 H 0.131 0.869 50 H 0.230 0.770 51 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.517 -10.858 16.517 19.773 hybrid contribution -1.350 1.306 -0.413 1.923 sum -1.867 -9.552 16.104 18.817 Atomic orbital electron populations 1.25701 0.96997 1.00622 1.00079 1.23764 0.95626 1.01034 1.01240 1.18820 0.83973 1.03540 0.98948 1.21478 0.94395 1.02610 0.95994 1.21245 0.94509 1.02137 0.95562 1.21782 0.89493 1.06105 1.00767 1.21320 0.91494 0.74995 0.82292 1.90665 1.71542 1.49324 1.34243 1.46544 1.07027 1.69557 1.14482 1.22743 0.79911 0.94876 1.01088 0.88217 1.23694 1.00057 0.97477 0.98604 1.24362 0.95211 0.94952 0.91579 0.89856 1.22592 0.95483 0.95720 1.01098 1.22522 0.91932 0.96819 1.02644 1.24983 0.98575 0.96298 0.86551 0.84020 1.67495 1.09423 1.09648 1.34217 1.22383 0.93633 0.98208 0.96961 1.20760 0.83854 0.85488 0.86944 1.90486 1.31224 1.66520 1.62147 1.41889 1.07987 1.37405 1.33790 1.19625 0.94475 1.18136 1.13735 0.90701 1.25938 0.94097 1.00193 1.00782 1.69650 0.98278 1.44437 1.43450 0.84949 0.78133 0.77861 0.77888 1.20092 1.19518 1.19723 0.74268 0.88520 0.89336 0.91843 0.90615 0.91183 0.92531 0.87952 0.86059 0.75034 0.89925 0.93622 0.91739 0.89825 0.88849 0.89714 0.89781 0.86915 0.77032 0.91363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.61 19.25 74.32 1.43 -2.18 16 2 C -0.22 -4.06 13.34 31.12 0.42 -3.64 16 3 C -0.02 -0.25 5.70 28.79 0.16 -0.09 16 4 C -0.11 -1.61 5.17 30.59 0.16 -1.45 16 5 C -0.10 -1.64 4.50 30.59 0.14 -1.51 16 6 C -0.14 -2.36 5.70 29.85 0.17 -2.19 16 7 C 0.51 11.75 7.83 87.66 0.69 12.44 16 8 O -0.58 -17.49 15.70 -3.02 -0.05 -17.54 16 9 N -0.72 -15.07 3.88 -435.03 -1.69 -16.76 16 10 C 0.12 2.68 2.52 46.59 0.12 2.80 16 11 H 0.10 2.23 7.36 -2.39 -0.02 2.21 16 12 C -0.16 -4.40 5.49 32.21 0.18 -4.22 16 13 C 0.05 1.48 4.27 46.15 0.20 1.68 16 14 H 0.08 3.34 6.92 -2.38 -0.02 3.32 16 15 C -0.11 -2.59 6.43 32.20 0.21 -2.38 16 16 C -0.10 -1.84 6.44 32.20 0.21 -1.63 16 17 C 0.04 0.92 4.65 46.13 0.21 1.13 16 18 H 0.14 2.27 8.14 -2.39 -0.02 2.25 16 19 N -0.49 -14.77 5.30 -809.03 -4.29 -19.05 16 20 C 0.02 0.65 4.01 85.56 0.34 0.99 16 21 C 0.44 20.66 7.59 87.65 0.66 21.33 16 22 O -0.62 -34.03 14.42 -3.06 -0.04 -34.07 16 23 N -0.57 -28.71 5.29 -306.97 -1.62 -30.34 16 24 C -0.33 -18.57 9.68 84.04 0.81 -17.75 16 25 H 0.07 4.56 7.16 -2.91 -0.02 4.53 16 26 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 27 N -0.92 -48.34 13.05 21.66 0.28 -48.05 16 28 Si 0.99 42.79 29.55 68.60 2.03 44.82 16 29 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 30 H -0.27 -11.17 7.11 99.48 0.71 -10.46 16 31 H -0.27 -11.31 7.11 99.48 0.71 -10.61 16 32 H 0.24 2.25 7.80 -4.42 -0.03 2.21 16 33 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 36 H 0.08 1.02 8.14 -2.38 -0.02 1.00 16 37 H 0.07 1.21 8.10 -2.39 -0.02 1.19 16 38 H 0.06 1.14 8.10 -2.39 -0.02 1.12 16 39 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.12 1.37 8.14 -2.39 -0.02 1.36 16 41 H 0.41 7.37 6.28 -92.71 -0.58 6.79 16 42 H 0.08 2.15 7.82 -2.38 -0.02 2.13 16 43 H 0.04 1.50 7.06 -2.39 -0.02 1.48 16 44 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.08 1.65 7.82 -2.39 -0.02 1.63 16 46 H 0.09 1.30 7.82 -2.38 -0.02 1.28 16 47 H 0.08 1.44 8.14 -2.39 -0.02 1.43 16 48 H 0.08 2.52 3.54 -2.39 -0.01 2.51 16 49 H 0.11 3.05 8.00 -2.39 -0.02 3.03 16 50 H 0.40 18.54 7.90 -92.70 -0.73 17.81 16 51 H 0.28 13.67 8.31 -92.72 -0.77 12.90 16 Total: -1.00 -74.16 409.83 0.83 -73.34 By element: Atomic # 1 Polarization: 44.76 SS G_CDS: -0.37 Total: 44.40 kcal Atomic # 6 Polarization: -3.31 SS G_CDS: 6.57 Total: 3.26 kcal Atomic # 7 Polarization: -106.89 SS G_CDS: -7.31 Total: -114.20 kcal Atomic # 8 Polarization: -51.52 SS G_CDS: -0.09 Total: -51.61 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -74.16 0.83 -73.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001110459516.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.130 kcal (2) G-P(sol) polarization free energy of solvation -74.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.031 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.335 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds