Wall clock time and date at job start Wed Apr 1 2020 05:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46800 * 2 1 4 4 C 1.53000 * 109.46992 * 119.99783 * 2 1 3 5 5 C 1.50700 * 109.47096 * 64.99761 * 4 2 1 6 6 O 1.21284 * 119.99983 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.47020 * 125.64680 * 359.97438 * 7 5 4 9 9 C 1.54330 * 107.40013 * 178.89587 * 8 7 5 10 10 C 1.55407 * 102.82778 * 337.97670 * 9 8 7 11 11 H 1.08991 * 110.89015 * 277.26813 * 10 9 8 12 12 O 1.42892 * 111.07028 * 153.48462 * 10 9 8 13 13 C 1.35914 * 116.99983 * 91.39118 * 12 10 9 14 14 C 1.38745 * 120.47411 * 354.27941 * 13 12 10 15 15 N 1.31811 * 120.68441 * 180.02562 * 14 13 12 16 16 C 1.31874 * 121.78156 * 359.97438 * 15 14 13 17 17 C 1.38212 * 120.88703 * 359.97438 * 16 15 14 18 18 C 1.38580 * 119.22348 * 359.76301 * 17 16 15 19 19 C 1.50696 * 120.81752 * 180.27499 * 18 17 16 20 20 N 1.46497 * 109.47511 * 260.23037 * 19 18 17 21 21 C 1.36933 * 120.00211 * 179.97438 * 20 19 18 22 22 H 1.08003 * 120.00096 * 359.97438 * 21 20 19 23 23 C 1.38816 * 120.00484 * 179.97438 * 21 20 19 24 24 N 1.31628 * 119.99247 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00492 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46913 * 90.00220 * 25 23 21 27 27 H 1.48503 * 109.47111 * 210.00271 * 25 23 21 28 28 H 1.48501 * 109.47293 * 330.00540 * 25 23 21 29 29 C 1.47423 * 125.64493 * 180.02562 * 7 5 4 30 30 H 1.08998 * 109.47275 * 300.00273 * 1 2 3 31 31 H 1.09000 * 109.47116 * 60.00346 * 1 2 3 32 32 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47275 * 239.99727 * 2 1 3 34 34 H 1.08998 * 109.46717 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47260 * 299.99237 * 3 2 1 36 36 H 1.08998 * 109.47430 * 59.99822 * 3 2 1 37 37 H 1.09006 * 109.46826 * 305.00080 * 4 2 1 38 38 H 1.08993 * 109.47089 * 185.00444 * 4 2 1 39 39 H 1.09004 * 109.88235 * 298.38662 * 8 7 5 40 40 H 1.08999 * 109.88600 * 59.40567 * 8 7 5 41 41 H 1.09005 * 110.71788 * 96.24358 * 9 8 7 42 42 H 1.08988 * 110.72046 * 219.52035 * 9 8 7 43 43 H 1.08002 * 119.65948 * 359.97438 * 14 13 12 44 44 H 1.07997 * 119.55559 * 180.02562 * 16 15 14 45 45 H 1.07999 * 120.39009 * 180.02562 * 17 16 15 46 46 H 1.09006 * 109.46952 * 20.22774 * 19 18 17 47 47 H 1.08999 * 109.47195 * 140.22297 * 19 18 17 48 48 H 0.97000 * 120.00246 * 359.97438 * 20 19 18 49 49 H 0.97006 * 119.99242 * 179.97438 * 24 23 21 50 50 H 1.08998 * 110.36960 * 322.93551 * 29 7 5 51 51 H 1.09002 * 110.36385 * 85.14804 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 -2.1732 1.1890 6 8 1.0116 -2.5903 0.2400 7 7 1.9852 -3.0086 2.1892 8 6 2.7454 -2.6380 3.3918 9 6 2.8763 -3.9048 4.2636 10 6 1.6971 -4.7877 3.7685 11 1 0.7654 -4.5007 4.2558 12 8 1.9728 -6.1748 3.9730 13 6 1.5590 -6.7195 5.1475 14 6 1.0071 -5.9201 6.1381 15 7 0.6050 -6.4439 7.2788 16 6 0.7081 -7.7354 7.5247 17 6 1.2464 -8.5956 6.5862 18 6 1.6768 -8.0874 5.3709 19 6 2.2636 -8.9936 4.3195 20 7 3.7253 -8.9054 4.3593 21 6 4.4799 -9.6462 3.4892 22 1 3.9974 -10.2958 2.7739 23 6 5.8650 -9.5623 3.5265 24 7 6.4530 -8.7709 4.3986 25 14 6.8944 -10.5733 2.3402 26 1 7.1286 -9.7927 1.0987 27 1 8.1976 -10.9020 2.9716 28 1 6.1751 -11.8291 2.0069 29 6 1.6624 -4.4454 2.2579 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1299 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.6053 -0.2616 2.1370 38 1 3.1262 -0.6442 1.2952 39 1 3.7350 -2.2790 3.1089 40 1 2.2132 -1.8625 3.9425 41 1 3.8305 -4.4001 4.0834 42 1 2.7610 -3.6599 5.3194 43 1 0.9068 -4.8575 5.9732 44 1 0.3667 -8.1264 8.4717 45 1 1.3267 -9.6520 6.7959 46 1 1.9562 -10.0213 4.5130 47 1 1.9077 -8.6870 3.3359 48 1 4.1588 -8.3223 5.0019 49 1 7.4210 -8.7126 4.4249 50 1 0.6690 -4.6310 1.8496 51 1 2.4087 -5.0281 1.7178 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001127867849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:01 Heat of formation + Delta-G solvation = -27.298643 kcal Electronic energy + Delta-G solvation = -30646.254963 eV Core-core repulsion = 26546.224425 eV Total energy + Delta-G solvation = -4100.030538 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.85388 -40.16767 -38.54950 -36.89017 -35.68102 -35.08120 -32.64541 -31.51331 -30.48478 -30.01458 -29.38417 -27.85968 -27.34925 -26.02350 -24.17133 -23.12274 -23.03692 -21.49133 -21.19935 -20.58861 -19.33603 -18.24907 -17.50257 -17.29859 -16.63206 -16.33215 -15.89356 -15.64294 -15.31790 -15.08282 -14.59871 -14.36904 -14.27147 -13.95916 -13.91493 -13.60722 -13.38191 -13.30694 -13.13975 -12.89954 -12.78166 -12.54682 -12.46837 -12.33164 -12.14237 -12.03450 -11.62621 -11.58859 -11.36233 -11.16044 -11.07770 -10.96541 -10.94539 -10.85734 -10.81406 -10.13461 -9.92457 -9.83444 -9.28077 -9.22726 -8.90067 -8.88693 -8.23168 -6.93874 -5.76961 -3.05882 1.29817 1.47384 2.42614 2.49834 3.29675 3.43417 3.48635 3.49950 3.92549 4.07930 4.28437 4.44293 4.47183 4.51379 4.60450 4.60787 4.71906 4.80538 4.88436 4.95686 4.97087 5.04775 5.17817 5.20277 5.23086 5.31715 5.34541 5.41276 5.49658 5.55855 5.60176 5.61580 5.66347 5.70003 5.73061 5.76926 5.82392 5.87682 5.97710 6.05107 6.09444 6.14085 6.19740 6.23879 6.52695 6.73832 6.81571 7.23994 7.40675 7.68773 7.95553 8.08058 8.40343 9.52369 10.07358 10.43486 11.45624 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008900 B = 0.002822 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.476245 B = 9921.397843 C =12199.584243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.082 4.082 3 C -0.148 4.148 4 C -0.132 4.132 5 C 0.530 3.470 6 O -0.534 6.534 7 N -0.618 5.618 8 C 0.103 3.897 9 C -0.157 4.157 10 C 0.069 3.931 11 H 0.088 0.912 12 O -0.272 6.272 13 C 0.095 3.905 14 C 0.007 3.993 15 N -0.458 5.458 16 C 0.054 3.946 17 C -0.120 4.120 18 C -0.065 4.065 19 C 0.195 3.805 20 N -0.721 5.721 21 C -0.237 4.237 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.907 3.093 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C 0.114 3.886 30 H 0.047 0.953 31 H 0.052 0.948 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.076 0.924 40 H 0.072 0.928 41 H 0.100 0.900 42 H 0.090 0.910 43 H 0.152 0.848 44 H 0.155 0.845 45 H 0.141 0.859 46 H 0.031 0.969 47 H 0.036 0.964 48 H 0.384 0.616 49 H 0.254 0.746 50 H 0.088 0.912 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.821 17.839 0.166 21.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.101 4.101 3 C -0.205 4.205 4 C -0.172 4.172 5 C 0.320 3.680 6 O -0.410 6.410 7 N -0.355 5.355 8 C -0.020 4.020 9 C -0.195 4.195 10 C 0.011 3.989 11 H 0.106 0.894 12 O -0.182 6.182 13 C 0.047 3.953 14 C -0.151 4.151 15 N -0.167 5.167 16 C -0.104 4.104 17 C -0.140 4.140 18 C -0.074 4.074 19 C 0.068 3.932 20 N -0.365 5.365 21 C -0.368 4.368 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.738 3.262 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.207 1.207 29 C -0.008 4.008 30 H 0.066 0.934 31 H 0.071 0.929 32 H 0.093 0.907 33 H 0.097 0.903 34 H 0.074 0.926 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.112 0.888 39 H 0.095 0.905 40 H 0.091 0.909 41 H 0.119 0.881 42 H 0.108 0.892 43 H 0.169 0.831 44 H 0.172 0.828 45 H 0.159 0.841 46 H 0.049 0.951 47 H 0.053 0.947 48 H 0.218 0.782 49 H 0.064 0.936 50 H 0.106 0.894 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -12.372 18.010 -0.105 21.850 hybrid contribution 1.271 -0.728 -0.736 1.639 sum -11.101 17.282 -0.841 20.557 Atomic orbital electron populations 1.21964 0.94706 1.03405 1.01015 1.20886 0.96684 0.95369 0.97174 1.21859 1.00948 0.95710 1.01984 1.21767 1.02991 0.91423 1.00988 1.20432 0.78936 0.87812 0.80839 1.90693 1.40064 1.77853 1.32437 1.48400 1.55881 1.09619 1.21566 1.22034 0.96686 0.97678 0.85579 1.23283 1.01015 0.95068 1.00133 1.23500 0.98235 0.80696 0.96505 0.89376 1.86286 1.74630 1.23537 1.33797 1.19892 0.95681 0.93120 0.86630 1.22766 1.02037 0.99989 0.90289 1.67446 1.15089 1.14445 1.19764 1.22551 0.99417 0.88733 0.99659 1.22021 0.97627 1.01826 0.92555 1.20219 0.98588 0.91545 0.97074 1.19524 0.86400 0.94054 0.93265 1.42226 0.98185 1.53239 1.42893 1.19213 0.88408 1.18092 1.11050 0.91104 1.24727 0.96491 1.00186 0.99449 1.69680 1.08877 1.41570 1.37949 0.86187 0.79899 0.79690 0.80394 1.21723 1.21798 1.20732 1.21999 1.03212 0.81329 0.94297 0.93391 0.92911 0.90717 0.90327 0.92616 0.92348 0.92644 0.88892 0.88793 0.90546 0.90920 0.88134 0.89188 0.83055 0.82821 0.84090 0.95142 0.94666 0.78203 0.93579 0.89392 0.89370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.93 37.16 0.33 -1.04 16 2 C -0.08 -0.69 2.57 -90.62 -0.23 -0.92 16 3 C -0.15 -0.93 9.19 37.16 0.34 -0.58 16 4 C -0.13 -1.05 4.37 -27.88 -0.12 -1.17 16 5 C 0.53 6.16 7.57 -10.98 -0.08 6.07 16 6 O -0.53 -8.08 14.22 5.55 0.08 -8.00 16 7 N -0.62 -6.79 3.33 -170.50 -0.57 -7.35 16 8 C 0.10 0.86 6.48 -3.06 -0.02 0.84 16 9 C -0.16 -1.63 6.60 -24.76 -0.16 -1.80 16 10 C 0.07 0.82 2.81 -24.44 -0.07 0.76 16 11 H 0.09 0.91 6.27 -51.93 -0.33 0.58 16 12 O -0.27 -4.42 9.32 -19.47 -0.18 -4.60 16 13 C 0.10 1.55 6.68 -39.07 -0.26 1.29 16 14 C 0.01 0.10 10.13 -17.37 -0.18 -0.08 16 15 N -0.46 -6.84 10.35 -13.13 -0.14 -6.97 16 16 C 0.05 0.75 11.18 -17.54 -0.20 0.55 16 17 C -0.12 -1.80 9.78 -39.46 -0.39 -2.18 16 18 C -0.07 -1.14 5.30 -104.18 -0.55 -1.69 16 19 C 0.19 3.98 6.12 -5.20 -0.03 3.95 16 20 N -0.72 -18.29 5.59 -61.09 -0.34 -18.63 16 21 C -0.24 -6.60 9.99 -15.06 -0.15 -6.75 16 22 H 0.07 1.92 7.83 -52.48 -0.41 1.51 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 25 Si 0.91 22.42 29.55 -169.99 -5.02 17.40 16 26 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 29 C 0.11 1.44 6.64 -2.52 -0.02 1.42 16 30 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.85 5.95 -51.93 -0.31 0.54 16 33 H 0.08 0.78 7.95 -51.93 -0.41 0.37 16 34 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 35 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 37 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 38 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 42 H 0.09 0.80 7.84 -51.94 -0.41 0.39 16 43 H 0.15 1.75 5.71 -52.49 -0.30 1.45 16 44 H 0.15 1.63 8.06 -52.49 -0.42 1.20 16 45 H 0.14 1.85 8.06 -52.49 -0.42 1.43 16 46 H 0.03 0.61 8.05 -51.93 -0.42 0.19 16 47 H 0.04 0.75 7.93 -51.93 -0.41 0.33 16 48 H 0.38 10.44 7.66 -40.82 -0.31 10.12 16 49 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 50 H 0.09 1.12 8.04 -51.93 -0.42 0.71 16 51 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 413.79 15.07 6.24 6.24 Total: -1.00 -33.76 413.79 -9.45 -43.21 By element: Atomic # 1 Polarization: 16.19 SS G_CDS: -8.36 Total: 7.83 kcal Atomic # 6 Polarization: 0.10 SS G_CDS: -1.88 Total: -1.78 kcal Atomic # 7 Polarization: -59.98 SS G_CDS: -0.32 Total: -60.30 kcal Atomic # 8 Polarization: -12.50 SS G_CDS: -0.10 Total: -12.60 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.76 -9.45 -43.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127867849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.907 kcal (2) G-P(sol) polarization free energy of solvation -33.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.850 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds