Wall clock time and date at job start Wed Apr 1 2020 05:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46800 * 2 1 4 4 C 1.53000 * 109.46992 * 119.99783 * 2 1 3 5 5 C 1.50700 * 109.47096 * 64.99761 * 4 2 1 6 6 O 1.21284 * 119.99983 * 0.02562 * 5 4 2 7 7 N 1.34781 * 119.99795 * 179.97438 * 5 4 2 8 8 C 1.47020 * 125.64680 * 359.97438 * 7 5 4 9 9 C 1.54330 * 107.40013 * 178.89587 * 8 7 5 10 10 C 1.55407 * 102.82778 * 337.97670 * 9 8 7 11 11 H 1.08991 * 110.89015 * 277.26813 * 10 9 8 12 12 O 1.42892 * 111.07028 * 153.48462 * 10 9 8 13 13 C 1.35914 * 116.99983 * 91.39118 * 12 10 9 14 14 C 1.38745 * 120.47411 * 354.27941 * 13 12 10 15 15 N 1.31811 * 120.68441 * 180.02562 * 14 13 12 16 16 C 1.31874 * 121.78156 * 359.97438 * 15 14 13 17 17 C 1.38212 * 120.88703 * 359.97438 * 16 15 14 18 18 C 1.38580 * 119.22348 * 359.76301 * 17 16 15 19 19 C 1.50696 * 120.81752 * 180.27499 * 18 17 16 20 20 N 1.46497 * 109.47511 * 260.23037 * 19 18 17 21 21 C 1.36933 * 120.00211 * 179.97438 * 20 19 18 22 22 H 1.08003 * 120.00096 * 359.97438 * 21 20 19 23 23 C 1.38816 * 120.00484 * 179.97438 * 21 20 19 24 24 N 1.31628 * 119.99247 * 0.02562 * 23 21 20 25 25 Si 1.86794 * 120.00492 * 179.97438 * 23 21 20 26 26 H 1.48505 * 109.46913 * 90.00220 * 25 23 21 27 27 H 1.48503 * 109.47111 * 210.00271 * 25 23 21 28 28 H 1.48501 * 109.47293 * 330.00540 * 25 23 21 29 29 C 1.47423 * 125.64493 * 180.02562 * 7 5 4 30 30 H 1.08998 * 109.47275 * 300.00273 * 1 2 3 31 31 H 1.09000 * 109.47116 * 60.00346 * 1 2 3 32 32 H 1.09000 * 109.47134 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47275 * 239.99727 * 2 1 3 34 34 H 1.08998 * 109.46717 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47260 * 299.99237 * 3 2 1 36 36 H 1.08998 * 109.47430 * 59.99822 * 3 2 1 37 37 H 1.09006 * 109.46826 * 305.00080 * 4 2 1 38 38 H 1.08993 * 109.47089 * 185.00444 * 4 2 1 39 39 H 1.09004 * 109.88235 * 298.38662 * 8 7 5 40 40 H 1.08999 * 109.88600 * 59.40567 * 8 7 5 41 41 H 1.09005 * 110.71788 * 96.24358 * 9 8 7 42 42 H 1.08988 * 110.72046 * 219.52035 * 9 8 7 43 43 H 1.08002 * 119.65948 * 359.97438 * 14 13 12 44 44 H 1.07997 * 119.55559 * 180.02562 * 16 15 14 45 45 H 1.07999 * 120.39009 * 180.02562 * 17 16 15 46 46 H 1.09006 * 109.46952 * 20.22774 * 19 18 17 47 47 H 1.08999 * 109.47195 * 140.22297 * 19 18 17 48 48 H 0.97000 * 120.00246 * 359.97438 * 20 19 18 49 49 H 0.97006 * 119.99242 * 179.97438 * 24 23 21 50 50 H 1.08998 * 110.36960 * 322.93551 * 29 7 5 51 51 H 1.09002 * 110.36385 * 85.14804 * 29 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 1.6412 -2.1732 1.1890 6 8 1.0116 -2.5903 0.2400 7 7 1.9852 -3.0086 2.1892 8 6 2.7454 -2.6380 3.3918 9 6 2.8763 -3.9048 4.2636 10 6 1.6971 -4.7877 3.7685 11 1 0.7654 -4.5007 4.2558 12 8 1.9728 -6.1748 3.9730 13 6 1.5590 -6.7195 5.1475 14 6 1.0071 -5.9201 6.1381 15 7 0.6050 -6.4439 7.2788 16 6 0.7081 -7.7354 7.5247 17 6 1.2464 -8.5956 6.5862 18 6 1.6768 -8.0874 5.3709 19 6 2.2636 -8.9936 4.3195 20 7 3.7253 -8.9054 4.3593 21 6 4.4799 -9.6462 3.4892 22 1 3.9974 -10.2958 2.7739 23 6 5.8650 -9.5623 3.5265 24 7 6.4530 -8.7709 4.3986 25 14 6.8944 -10.5733 2.3402 26 1 7.1286 -9.7927 1.0987 27 1 8.1976 -10.9020 2.9716 28 1 6.1751 -11.8291 2.0069 29 6 1.6624 -4.4454 2.2579 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8899 34 1 3.1299 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8899 37 1 1.6053 -0.2616 2.1370 38 1 3.1262 -0.6442 1.2952 39 1 3.7350 -2.2790 3.1089 40 1 2.2132 -1.8625 3.9425 41 1 3.8305 -4.4001 4.0834 42 1 2.7610 -3.6599 5.3194 43 1 0.9068 -4.8575 5.9732 44 1 0.3667 -8.1264 8.4717 45 1 1.3267 -9.6520 6.7959 46 1 1.9562 -10.0213 4.5130 47 1 1.9077 -8.6870 3.3359 48 1 4.1588 -8.3223 5.0019 49 1 7.4210 -8.7126 4.4249 50 1 0.6690 -4.6310 1.8496 51 1 2.4087 -5.0281 1.7178 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001127867849.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:00 Heat of formation + Delta-G solvation = -48.900037 kcal Electronic energy + Delta-G solvation = -30647.191670 eV Core-core repulsion = 26546.224425 eV Total energy + Delta-G solvation = -4100.967245 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.93886 -41.14460 -39.58860 -37.87356 -36.85572 -36.41130 -34.33449 -32.52679 -32.10280 -31.23482 -30.28803 -28.62731 -27.94548 -27.74111 -25.26663 -24.84601 -24.05097 -22.82177 -22.20556 -21.37416 -20.14250 -19.49157 -19.18809 -18.37218 -17.77986 -17.34889 -17.06310 -16.65511 -16.52579 -16.26410 -15.95363 -15.37775 -15.30931 -15.14211 -15.08845 -14.83558 -14.62586 -14.53360 -14.27400 -14.17311 -13.96583 -13.49047 -13.28840 -13.19314 -13.02464 -12.98817 -12.86682 -12.81544 -12.74771 -12.64870 -12.12900 -12.06974 -12.01972 -11.92535 -11.84381 -11.73908 -11.57327 -10.99914 -10.84691 -10.50577 -10.45775 -9.79440 -9.39429 -9.02460 -7.95837 -5.24908 0.13670 0.25386 1.45740 1.47418 1.53388 1.55681 1.58062 2.31879 2.53886 2.80019 3.18887 3.36589 3.41992 3.46533 3.61785 3.70114 3.78442 3.86024 3.87875 3.98869 4.01161 4.01502 4.17800 4.20657 4.33540 4.43095 4.45456 4.57681 4.62628 4.65346 4.67534 4.70504 4.72843 4.75501 4.84526 4.88446 4.90723 4.96667 5.00479 5.04789 5.11199 5.12119 5.30947 5.36404 5.46395 5.46828 5.51541 5.60984 6.24353 6.27606 6.41174 6.94207 7.07430 7.31607 8.02775 8.29250 9.27377 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.008900 B = 0.002822 C = 0.002295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3145.476245 B = 9921.397843 C =12199.584243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.124 4.124 5 C 0.522 3.478 6 O -0.579 6.579 7 N -0.618 5.618 8 C 0.105 3.895 9 C -0.152 4.152 10 C 0.068 3.932 11 H 0.112 0.888 12 O -0.303 6.303 13 C 0.085 3.915 14 C 0.014 3.986 15 N -0.464 5.464 16 C 0.058 3.942 17 C -0.119 4.119 18 C -0.096 4.096 19 C 0.199 3.801 20 N -0.730 5.730 21 C -0.243 4.243 22 H 0.075 0.925 23 C -0.072 4.072 24 N -0.966 5.966 25 Si 0.972 3.028 26 H -0.290 1.290 27 H -0.293 1.293 28 H -0.269 1.269 29 C 0.115 3.885 30 H 0.063 0.937 31 H 0.054 0.946 32 H 0.044 0.956 33 H 0.053 0.947 34 H 0.062 0.938 35 H 0.058 0.942 36 H 0.069 0.931 37 H 0.122 0.878 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.068 0.932 42 H 0.113 0.887 43 H 0.181 0.819 44 H 0.190 0.810 45 H 0.156 0.844 46 H 0.039 0.961 47 H 0.023 0.977 48 H 0.372 0.628 49 H 0.251 0.749 50 H 0.079 0.921 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.396 19.683 1.828 23.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.103 4.103 3 C -0.199 4.199 4 C -0.163 4.163 5 C 0.314 3.686 6 O -0.459 6.459 7 N -0.353 5.353 8 C -0.017 4.017 9 C -0.190 4.190 10 C 0.011 3.989 11 H 0.130 0.870 12 O -0.214 6.214 13 C 0.037 3.963 14 C -0.144 4.144 15 N -0.174 5.174 16 C -0.099 4.099 17 C -0.139 4.139 18 C -0.104 4.104 19 C 0.073 3.927 20 N -0.373 5.373 21 C -0.374 4.374 22 H 0.093 0.907 23 C -0.264 4.264 24 N -0.617 5.617 25 Si 0.801 3.199 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.194 1.194 29 C -0.009 4.009 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.063 0.937 33 H 0.072 0.928 34 H 0.081 0.919 35 H 0.077 0.923 36 H 0.088 0.912 37 H 0.140 0.860 38 H 0.131 0.869 39 H 0.108 0.892 40 H 0.130 0.870 41 H 0.086 0.914 42 H 0.131 0.869 43 H 0.198 0.802 44 H 0.207 0.793 45 H 0.174 0.826 46 H 0.057 0.943 47 H 0.041 0.959 48 H 0.204 0.796 49 H 0.060 0.940 50 H 0.097 0.903 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -12.976 19.851 1.568 23.767 hybrid contribution 1.354 -1.312 -1.262 2.269 sum -11.622 18.539 0.306 21.882 Atomic orbital electron populations 1.21923 0.95325 1.01666 1.01952 1.20885 0.96202 0.96701 0.96503 1.21806 1.01388 0.93934 1.02738 1.21837 1.04259 0.88345 1.01853 1.21239 0.78076 0.89260 0.80038 1.90678 1.42162 1.78865 1.34203 1.48516 1.55814 1.08537 1.22445 1.22244 0.97707 0.97345 0.84364 1.23244 0.98518 0.95329 1.01919 1.23695 1.00045 0.79215 0.95987 0.87000 1.86243 1.75059 1.25839 1.34255 1.20022 0.96085 0.93013 0.87169 1.23135 1.00771 1.01066 0.89416 1.67554 1.15077 1.14994 1.19755 1.23086 0.98140 0.88201 1.00469 1.22230 0.97024 1.02937 0.91724 1.20126 1.00746 0.91995 0.97576 1.19485 0.83853 0.95276 0.94065 1.42365 1.00194 1.52599 1.42112 1.19593 0.89059 1.17757 1.11031 0.90746 1.25524 0.97689 1.01774 1.01414 1.69831 1.08737 1.43348 1.39780 0.85164 0.78066 0.78584 0.78083 1.21709 1.21942 1.19373 1.21813 1.01681 0.82615 0.94803 0.91752 0.92680 0.93702 0.92843 0.91858 0.92338 0.91177 0.85999 0.86862 0.89217 0.87048 0.91351 0.86868 0.80203 0.79305 0.82614 0.94298 0.95905 0.79594 0.94024 0.90292 0.92535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.60 8.93 71.98 0.64 -1.96 16 2 C -0.08 -1.30 2.57 -10.79 -0.03 -1.33 16 3 C -0.14 -1.43 9.19 71.98 0.66 -0.77 16 4 C -0.12 -1.68 4.37 29.85 0.13 -1.55 16 5 C 0.52 11.95 7.57 87.66 0.66 12.61 16 6 O -0.58 -18.39 14.22 -3.04 -0.04 -18.43 16 7 N -0.62 -13.19 3.33 -811.74 -2.70 -15.89 16 8 C 0.10 1.50 6.48 86.73 0.56 2.06 16 9 C -0.15 -2.98 6.60 31.87 0.21 -2.77 16 10 C 0.07 1.61 2.81 32.08 0.09 1.70 16 11 H 0.11 2.11 6.27 -2.39 -0.01 2.09 16 12 O -0.30 -10.15 9.32 -92.58 -0.86 -11.01 16 13 C 0.09 2.76 6.68 22.60 0.15 2.91 16 14 C 0.01 0.37 10.13 84.82 0.86 1.23 16 15 N -0.46 -12.65 10.35 -195.45 -2.02 -14.67 16 16 C 0.06 1.45 11.18 84.68 0.95 2.40 16 17 C -0.12 -3.42 9.78 22.35 0.22 -3.20 16 18 C -0.10 -3.36 5.30 -19.58 -0.10 -3.46 16 19 C 0.20 8.38 6.12 85.63 0.52 8.91 16 20 N -0.73 -38.11 5.59 -347.18 -1.94 -40.05 16 21 C -0.24 -13.80 9.99 84.03 0.84 -12.96 16 22 H 0.07 4.08 7.83 -2.91 -0.02 4.06 16 23 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 24 N -0.97 -59.45 13.06 21.65 0.28 -59.17 16 25 Si 0.97 46.72 29.55 68.60 2.03 48.75 16 26 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 28 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 29 C 0.11 3.04 6.64 86.86 0.58 3.62 16 30 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.04 1.05 5.95 -2.39 -0.01 1.04 16 33 H 0.05 1.09 7.95 -2.39 -0.02 1.07 16 34 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 35 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 36 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 37 H 0.12 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.09 1.09 8.14 -2.39 -0.02 1.08 16 40 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 42 H 0.11 1.68 7.84 -2.39 -0.02 1.66 16 43 H 0.18 3.59 5.71 -2.91 -0.02 3.57 16 44 H 0.19 3.29 8.06 -2.91 -0.02 3.27 16 45 H 0.16 3.87 8.06 -2.91 -0.02 3.85 16 46 H 0.04 1.56 8.05 -2.38 -0.02 1.54 16 47 H 0.02 1.02 7.93 -2.39 -0.02 1.00 16 48 H 0.37 20.92 7.66 -92.71 -0.71 20.21 16 49 H 0.25 14.93 8.31 -92.70 -0.77 14.16 16 50 H 0.08 2.18 8.04 -2.39 -0.02 2.16 16 51 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 Total: -1.00 -76.49 413.79 2.37 -74.13 By element: Atomic # 1 Polarization: 32.38 SS G_CDS: 0.22 Total: 32.60 kcal Atomic # 6 Polarization: -3.67 SS G_CDS: 7.41 Total: 3.75 kcal Atomic # 7 Polarization: -123.40 SS G_CDS: -6.38 Total: -129.78 kcal Atomic # 8 Polarization: -28.54 SS G_CDS: -0.91 Total: -29.44 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.75 kcal Total: -76.49 2.37 -74.13 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001127867849.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.229 kcal (2) G-P(sol) polarization free energy of solvation -76.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.129 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds