Wall clock time and date at job start Wed Apr 1 2020 05:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47475 * 2 1 4 4 C 1.52995 * 109.47203 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47440 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99541 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00065 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99764 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47053 * 180.02562 * 8 7 5 10 10 C 1.38579 * 120.81641 * 260.22034 * 9 8 7 11 11 C 1.38209 * 119.22420 * 180.27673 * 10 9 8 12 12 N 1.31876 * 120.88645 * 359.76654 * 11 10 9 13 13 C 1.31810 * 121.78405 * 359.97438 * 12 11 10 14 14 C 1.38749 * 120.67907 * 359.97438 * 13 12 11 15 15 O 1.35912 * 120.46920 * 180.02562 * 14 13 12 16 16 C 1.42900 * 117.00475 * 359.97438 * 15 14 13 17 17 H 1.09004 * 110.88444 * 32.42519 * 16 15 14 18 18 C 1.55405 * 111.03994 * 156.23007 * 16 15 14 19 19 C 1.54325 * 102.82616 * 153.47156 * 18 16 15 20 20 N 1.47018 * 107.40412 * 337.97548 * 19 18 16 21 21 C 1.36936 * 125.64999 * 178.82784 * 20 19 18 22 22 H 1.08004 * 120.00405 * 180.02562 * 21 20 19 23 23 C 1.38812 * 120.00093 * 0.02562 * 21 20 19 24 24 N 1.31626 * 119.99909 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00506 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47109 * 60.00305 * 25 23 21 27 27 H 1.48499 * 109.47578 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47363 * 300.00729 * 25 23 21 29 29 C 1.47426 * 108.70517 * 358.86539 * 20 19 18 30 30 H 1.08997 * 109.47693 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47002 * 300.00586 * 1 2 3 32 32 H 1.09006 * 109.47021 * 59.99964 * 1 2 3 33 33 H 1.09000 * 109.47271 * 239.99882 * 2 1 3 34 34 H 1.08998 * 109.46792 * 120.00178 * 2 1 3 35 35 H 1.09000 * 109.46967 * 59.99696 * 3 2 1 36 36 H 1.08998 * 109.47256 * 299.99894 * 3 2 1 37 37 H 1.09000 * 109.47272 * 60.00049 * 4 3 2 38 38 H 1.09006 * 109.47293 * 300.00036 * 4 3 2 39 39 H 0.97002 * 120.00360 * 0.02562 * 7 5 4 40 40 H 1.09000 * 109.47158 * 59.99981 * 8 7 5 41 41 H 1.09006 * 109.46899 * 300.00279 * 8 7 5 42 42 H 1.08001 * 120.38132 * 0.02562 * 10 9 8 43 43 H 1.07998 * 119.55169 * 179.75035 * 11 10 9 44 44 H 1.07996 * 119.65908 * 180.02562 * 13 12 11 45 45 H 1.09000 * 110.69068 * 35.18415 * 18 16 15 46 46 H 1.09002 * 110.85092 * 271.83409 * 18 16 15 47 47 H 1.09002 * 109.88192 * 218.47989 * 19 18 16 48 48 H 1.09000 * 109.88128 * 97.46841 * 19 18 16 49 49 H 0.96997 * 120.00493 * 180.02562 * 24 23 21 50 50 H 1.08999 * 110.36956 * 142.96999 * 29 20 19 51 51 H 1.09003 * 110.36599 * 265.28903 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0725 2.8631 0.0013 6 8 3.2844 3.7850 0.0017 7 7 5.3976 3.1093 0.0024 8 6 5.8860 4.4905 0.0036 9 6 7.3930 4.4904 0.0041 10 6 8.1025 4.6917 1.1774 11 6 9.4841 4.6908 1.1390 12 7 10.1297 4.4972 0.0055 13 6 9.4927 4.2971 -1.1309 14 6 8.1058 4.2830 -1.1721 15 8 7.4533 4.0758 -2.3462 16 6 8.2587 3.8782 -3.5100 17 1 9.1907 3.3730 -3.2565 18 6 7.4797 3.0915 -4.6006 19 6 8.1534 3.5595 -5.9077 20 7 8.7971 4.8523 -5.6322 21 6 9.5219 5.5902 -6.5296 22 1 9.9570 6.5317 -6.2281 23 6 9.6976 5.1283 -7.8267 24 7 9.1670 3.9812 -8.1944 25 14 10.6858 6.1352 -9.0510 26 1 12.0699 6.3129 -8.5430 27 1 10.7241 5.4286 -10.3566 28 1 10.0487 7.4650 -9.2269 29 6 8.5336 5.2222 -4.2297 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.9337 0.9284 -0.8891 38 1 3.9330 0.9286 0.8909 39 1 6.0279 2.3720 0.0025 40 1 5.5220 5.0039 0.8936 41 1 5.5233 5.0049 -0.8864 42 1 7.5819 4.8514 2.1100 43 1 10.0423 4.8512 2.0495 44 1 10.0559 4.1417 -2.0392 45 1 6.4242 3.3636 -4.5918 46 1 7.6031 2.0168 -4.4664 47 1 7.4033 3.6780 -6.6896 48 1 8.9023 2.8317 -6.2200 49 1 9.2901 3.6582 -9.1006 50 1 9.4052 5.7131 -3.7967 51 1 7.6608 5.8721 -4.1663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001130313253.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:14 Heat of formation + Delta-G solvation = -27.227440 kcal Electronic energy + Delta-G solvation = -30319.208874 eV Core-core repulsion = 26219.181424 eV Total energy + Delta-G solvation = -4100.027450 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -40.94965 -39.75864 -38.59071 -36.44035 -35.86202 -35.19711 -32.71115 -32.26869 -30.82610 -30.38189 -29.28055 -27.57108 -27.16128 -24.79025 -24.59409 -23.30002 -22.30020 -21.39148 -20.58098 -20.44065 -20.20451 -18.20360 -17.38658 -17.22557 -16.70352 -16.42802 -16.21989 -15.73749 -15.24834 -14.97358 -14.76792 -14.69607 -14.13804 -14.04070 -13.96861 -13.87350 -13.57781 -13.26350 -13.07128 -12.73474 -12.66404 -12.57784 -12.43791 -12.12161 -12.01823 -11.66795 -11.58671 -11.49195 -11.27499 -11.03583 -10.85532 -10.85450 -10.52838 -10.43491 -10.21693 -10.16948 -10.02697 -9.79905 -9.64520 -9.50296 -9.23095 -8.69311 -8.42226 -6.96773 -5.80500 -3.15630 0.90149 1.09478 2.52331 3.07238 3.12277 3.36956 3.41399 3.42511 3.69871 4.29306 4.38430 4.44282 4.50557 4.54690 4.56578 4.66167 4.75288 4.95434 5.00646 5.06760 5.09729 5.16904 5.20194 5.29162 5.37642 5.38931 5.44483 5.51309 5.53314 5.54337 5.59664 5.65576 5.66777 5.73883 5.86052 5.97567 5.98528 6.06205 6.09413 6.21224 6.22598 6.30613 6.41473 6.44268 6.57330 7.30628 7.37961 7.43667 7.45709 7.71307 7.84644 8.07698 8.13921 9.11162 9.70640 10.33974 11.31187 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009408 B = 0.002547 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.468315 B =10989.064708 C =13399.713029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.126 4.126 3 C -0.105 4.105 4 C -0.141 4.141 5 C 0.513 3.487 6 O -0.542 6.542 7 N -0.723 5.723 8 C 0.173 3.827 9 C -0.112 4.112 10 C -0.116 4.116 11 C 0.048 3.952 12 N -0.441 5.441 13 C 0.018 3.982 14 C 0.110 3.890 15 O -0.292 6.292 16 C 0.059 3.941 17 H 0.084 0.916 18 C -0.133 4.133 19 C 0.178 3.822 20 N -0.601 5.601 21 C -0.233 4.233 22 H 0.079 0.921 23 C -0.006 4.006 24 N -0.922 5.922 25 Si 0.915 3.085 26 H -0.284 1.284 27 H -0.289 1.289 28 H -0.284 1.284 29 C 0.121 3.879 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.068 0.932 36 H 0.071 0.929 37 H 0.095 0.905 38 H 0.091 0.909 39 H 0.401 0.599 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.140 0.860 43 H 0.157 0.843 44 H 0.166 0.834 45 H 0.070 0.930 46 H 0.068 0.932 47 H 0.050 0.950 48 H 0.052 0.948 49 H 0.255 0.745 50 H 0.043 0.957 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.908 -7.718 21.190 24.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.143 4.143 4 C -0.181 4.181 5 C 0.300 3.700 6 O -0.419 6.419 7 N -0.375 5.375 8 C 0.050 3.950 9 C -0.121 4.121 10 C -0.137 4.137 11 C -0.109 4.109 12 N -0.151 5.151 13 C -0.141 4.141 14 C 0.061 3.939 15 O -0.202 6.202 16 C 0.003 3.997 17 H 0.101 0.899 18 C -0.172 4.172 19 C 0.053 3.947 20 N -0.329 5.329 21 C -0.360 4.360 22 H 0.097 0.903 23 C -0.202 4.202 24 N -0.569 5.569 25 Si 0.745 3.255 26 H -0.210 1.210 27 H -0.215 1.215 28 H -0.211 1.211 29 C -0.006 4.006 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.089 0.911 37 H 0.113 0.887 38 H 0.110 0.890 39 H 0.235 0.765 40 H 0.095 0.905 41 H 0.102 0.898 42 H 0.158 0.842 43 H 0.174 0.826 44 H 0.183 0.817 45 H 0.089 0.911 46 H 0.087 0.913 47 H 0.068 0.932 48 H 0.070 0.930 49 H 0.065 0.935 50 H 0.062 0.938 51 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -8.743 -7.066 20.878 23.713 hybrid contribution 0.287 0.190 -0.782 0.855 sum -8.456 -6.876 20.096 22.861 Atomic orbital electron populations 1.21761 0.95710 1.01515 1.02044 1.21551 0.96159 0.96595 1.02004 1.21373 0.92623 0.96620 1.03669 1.21706 0.98226 0.93704 1.04447 1.20752 0.81842 0.91866 0.75560 1.90709 1.55218 1.46586 1.49364 1.46021 1.07187 1.08475 1.75797 1.19949 0.87825 0.83805 1.03434 1.19640 0.95730 1.05432 0.91250 1.21938 0.95402 0.98737 0.97599 1.22612 0.91536 1.00393 0.96381 1.67550 1.40851 1.08303 0.98374 1.23164 0.90700 1.02520 0.97714 1.20008 0.92201 0.94630 0.87100 1.86167 1.35810 1.84418 1.13825 1.24075 0.94118 0.99287 0.82241 0.89864 1.23077 1.00159 0.98633 0.95294 1.21211 0.95732 0.87387 0.90334 1.44310 1.61411 1.21502 1.05645 1.19008 1.25115 1.01450 0.90467 0.90292 1.24823 1.00644 0.97430 0.97320 1.69924 1.48493 1.20152 1.18371 0.86150 0.79769 0.79129 0.80422 1.21030 1.21499 1.21055 1.21901 0.98587 0.93165 0.86951 0.92805 0.92729 0.92576 0.91864 0.92077 0.91300 0.91067 0.88707 0.89039 0.76526 0.90496 0.89758 0.84246 0.82617 0.81706 0.91090 0.91292 0.93164 0.92950 0.93507 0.93829 0.95149 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.00 9.91 37.16 0.37 -0.63 16 2 C -0.13 -0.83 5.93 -26.73 -0.16 -0.99 16 3 C -0.10 -0.88 4.50 -26.73 -0.12 -1.00 16 4 C -0.14 -1.08 5.70 -27.88 -0.16 -1.24 16 5 C 0.51 5.71 7.83 -10.99 -0.09 5.63 16 6 O -0.54 -8.20 15.98 5.56 0.09 -8.11 16 7 N -0.72 -7.19 5.55 -61.47 -0.34 -7.53 16 8 C 0.17 1.92 5.54 -5.19 -0.03 1.89 16 9 C -0.11 -1.25 5.30 -104.18 -0.55 -1.80 16 10 C -0.12 -1.08 9.78 -39.47 -0.39 -1.47 16 11 C 0.05 0.50 11.18 -17.54 -0.20 0.30 16 12 N -0.44 -5.93 10.35 -13.13 -0.14 -6.07 16 13 C 0.02 0.25 10.20 -17.37 -0.18 0.07 16 14 C 0.11 1.48 6.69 -39.07 -0.26 1.22 16 15 O -0.29 -4.43 9.32 -19.46 -0.18 -4.61 16 16 C 0.06 1.00 2.90 -24.44 -0.07 0.93 16 17 H 0.08 1.33 5.99 -51.93 -0.31 1.02 16 18 C -0.13 -2.38 6.71 -24.76 -0.17 -2.54 16 19 C 0.18 4.14 5.37 -3.07 -0.02 4.13 16 20 N -0.60 -14.98 3.39 -170.07 -0.58 -15.55 16 21 C -0.23 -6.37 10.28 -15.06 -0.15 -6.52 16 22 H 0.08 2.09 7.83 -52.48 -0.41 1.68 16 23 C -0.01 -0.16 5.49 -17.43 -0.10 -0.25 16 24 N -0.92 -26.44 10.31 55.49 0.57 -25.87 16 25 Si 0.92 21.80 29.55 -169.99 -5.02 16.78 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 28 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 29 C 0.12 2.46 6.97 -2.53 -0.02 2.44 16 30 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.63 8.10 -51.93 -0.42 0.21 16 36 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 37 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.40 3.26 8.46 -40.82 -0.35 2.91 16 40 H 0.08 0.79 8.05 -51.93 -0.42 0.37 16 41 H 0.08 1.14 7.93 -51.93 -0.41 0.73 16 42 H 0.14 0.89 8.06 -52.49 -0.42 0.47 16 43 H 0.16 1.16 8.06 -52.49 -0.42 0.74 16 44 H 0.17 2.35 5.90 -52.49 -0.31 2.04 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 47 H 0.05 1.30 7.51 -51.93 -0.39 0.91 16 48 H 0.05 1.33 7.37 -51.93 -0.38 0.95 16 49 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 50 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 51 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 LS Contribution 415.27 15.07 6.26 6.26 Total: -1.00 -32.35 415.27 -10.07 -42.42 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -8.45 Total: 2.12 kcal Atomic # 6 Polarization: 2.44 SS G_CDS: -2.28 Total: 0.16 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.48 Total: -55.02 kcal Atomic # 8 Polarization: -12.63 SS G_CDS: -0.09 Total: -12.72 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.35 -10.07 -42.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130313253.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.196 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds