Wall clock time and date at job start Wed Apr 1 2020 05:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47475 * 2 1 4 4 C 1.52995 * 109.47203 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.47440 * 180.02562 * 4 3 2 6 6 O 1.21278 * 119.99541 * 0.02562 * 5 4 3 7 7 N 1.34770 * 120.00065 * 179.97438 * 5 4 3 8 8 C 1.46505 * 119.99764 * 180.02562 * 7 5 4 9 9 C 1.50700 * 109.47053 * 180.02562 * 8 7 5 10 10 C 1.38579 * 120.81641 * 260.22034 * 9 8 7 11 11 C 1.38209 * 119.22420 * 180.27673 * 10 9 8 12 12 N 1.31876 * 120.88645 * 359.76654 * 11 10 9 13 13 C 1.31810 * 121.78405 * 359.97438 * 12 11 10 14 14 C 1.38749 * 120.67907 * 359.97438 * 13 12 11 15 15 O 1.35912 * 120.46920 * 180.02562 * 14 13 12 16 16 C 1.42900 * 117.00475 * 359.97438 * 15 14 13 17 17 H 1.09004 * 110.88444 * 32.42519 * 16 15 14 18 18 C 1.55405 * 111.03994 * 156.23007 * 16 15 14 19 19 C 1.54325 * 102.82616 * 153.47156 * 18 16 15 20 20 N 1.47018 * 107.40412 * 337.97548 * 19 18 16 21 21 C 1.36936 * 125.64999 * 178.82784 * 20 19 18 22 22 H 1.08004 * 120.00405 * 180.02562 * 21 20 19 23 23 C 1.38812 * 120.00093 * 0.02562 * 21 20 19 24 24 N 1.31626 * 119.99909 * 0.02562 * 23 21 20 25 25 Si 1.86793 * 120.00506 * 179.97438 * 23 21 20 26 26 H 1.48507 * 109.47109 * 60.00305 * 25 23 21 27 27 H 1.48499 * 109.47578 * 180.02562 * 25 23 21 28 28 H 1.48497 * 109.47363 * 300.00729 * 25 23 21 29 29 C 1.47426 * 108.70517 * 358.86539 * 20 19 18 30 30 H 1.08997 * 109.47693 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47002 * 300.00586 * 1 2 3 32 32 H 1.09006 * 109.47021 * 59.99964 * 1 2 3 33 33 H 1.09000 * 109.47271 * 239.99882 * 2 1 3 34 34 H 1.08998 * 109.46792 * 120.00178 * 2 1 3 35 35 H 1.09000 * 109.46967 * 59.99696 * 3 2 1 36 36 H 1.08998 * 109.47256 * 299.99894 * 3 2 1 37 37 H 1.09000 * 109.47272 * 60.00049 * 4 3 2 38 38 H 1.09006 * 109.47293 * 300.00036 * 4 3 2 39 39 H 0.97002 * 120.00360 * 0.02562 * 7 5 4 40 40 H 1.09000 * 109.47158 * 59.99981 * 8 7 5 41 41 H 1.09006 * 109.46899 * 300.00279 * 8 7 5 42 42 H 1.08001 * 120.38132 * 0.02562 * 10 9 8 43 43 H 1.07998 * 119.55169 * 179.75035 * 11 10 9 44 44 H 1.07996 * 119.65908 * 180.02562 * 13 12 11 45 45 H 1.09000 * 110.69068 * 35.18415 * 18 16 15 46 46 H 1.09002 * 110.85092 * 271.83409 * 18 16 15 47 47 H 1.09002 * 109.88192 * 218.47989 * 19 18 16 48 48 H 1.09000 * 109.88128 * 97.46841 * 19 18 16 49 49 H 0.96997 * 120.00493 * 180.02562 * 24 23 21 50 50 H 1.08999 * 110.36956 * 142.96999 * 29 20 19 51 51 H 1.09003 * 110.36599 * 265.28903 * 29 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0725 2.8631 0.0013 6 8 3.2844 3.7850 0.0017 7 7 5.3976 3.1093 0.0024 8 6 5.8860 4.4905 0.0036 9 6 7.3930 4.4904 0.0041 10 6 8.1025 4.6917 1.1774 11 6 9.4841 4.6908 1.1390 12 7 10.1297 4.4972 0.0055 13 6 9.4927 4.2971 -1.1309 14 6 8.1058 4.2830 -1.1721 15 8 7.4533 4.0758 -2.3462 16 6 8.2587 3.8782 -3.5100 17 1 9.1907 3.3730 -3.2565 18 6 7.4797 3.0915 -4.6006 19 6 8.1534 3.5595 -5.9077 20 7 8.7971 4.8523 -5.6322 21 6 9.5219 5.5902 -6.5296 22 1 9.9570 6.5317 -6.2281 23 6 9.6976 5.1283 -7.8267 24 7 9.1670 3.9812 -8.1944 25 14 10.6858 6.1352 -9.0510 26 1 12.0699 6.3129 -8.5430 27 1 10.7241 5.4286 -10.3566 28 1 10.0487 7.4650 -9.2269 29 6 8.5336 5.2222 -4.2297 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 1.6767 1.9563 0.8900 36 1 1.6768 1.9563 -0.8900 37 1 3.9337 0.9284 -0.8891 38 1 3.9330 0.9286 0.8909 39 1 6.0279 2.3720 0.0025 40 1 5.5220 5.0039 0.8936 41 1 5.5233 5.0049 -0.8864 42 1 7.5819 4.8514 2.1100 43 1 10.0423 4.8512 2.0495 44 1 10.0559 4.1417 -2.0392 45 1 6.4242 3.3636 -4.5918 46 1 7.6031 2.0168 -4.4664 47 1 7.4033 3.6780 -6.6896 48 1 8.9023 2.8317 -6.2200 49 1 9.2901 3.6582 -9.1006 50 1 9.4052 5.7131 -3.7967 51 1 7.6608 5.8721 -4.1663 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001130313253.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:15:13 Heat of formation + Delta-G solvation = -47.687438 kcal Electronic energy + Delta-G solvation = -30320.096086 eV Core-core repulsion = 26219.181424 eV Total energy + Delta-G solvation = -4100.914662 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.95900 -40.66909 -39.84903 -37.96859 -36.62183 -36.01896 -34.36649 -33.44303 -31.63719 -31.41271 -30.87466 -29.21748 -28.01770 -26.63674 -25.28545 -24.45599 -23.21145 -22.17812 -22.00820 -21.78352 -21.28585 -19.33285 -19.06700 -18.16482 -17.88700 -17.34060 -16.92364 -16.80390 -16.73546 -16.37309 -15.85843 -15.78925 -15.62086 -15.17990 -14.84298 -14.67312 -14.53537 -14.34832 -14.28379 -14.12341 -13.89217 -13.62563 -13.50738 -13.27787 -13.20906 -12.98628 -12.88829 -12.68280 -12.18012 -12.17206 -12.11496 -12.06665 -11.98095 -11.84582 -11.75741 -11.60999 -11.42903 -11.10567 -10.75400 -10.53753 -10.45830 -10.11929 -9.46639 -8.99769 -7.90600 -5.28020 0.01171 0.16590 1.44873 1.47890 1.54173 1.67501 1.93452 2.26529 2.47178 2.79871 3.28241 3.34497 3.45575 3.54935 3.65139 3.71168 3.81928 3.86196 3.93869 3.96563 3.98519 4.08534 4.20043 4.38187 4.45444 4.50203 4.52227 4.56949 4.61389 4.66954 4.71145 4.78198 4.82424 4.84547 4.89580 4.93919 4.96517 5.03013 5.13248 5.15332 5.29537 5.38322 5.38437 5.41167 5.52925 5.54848 5.56488 5.67501 6.10178 6.21529 6.54074 6.93971 7.03395 7.25918 7.67827 8.30758 9.19418 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.009408 B = 0.002547 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2975.468315 B =10989.064708 C =13399.713029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.121 4.121 3 C -0.103 4.103 4 C -0.134 4.134 5 C 0.509 3.491 6 O -0.588 6.588 7 N -0.713 5.713 8 C 0.176 3.824 9 C -0.103 4.103 10 C -0.099 4.099 11 C 0.054 3.946 12 N -0.467 5.467 13 C 0.003 3.997 14 C 0.089 3.911 15 O -0.295 6.295 16 C 0.082 3.918 17 H 0.095 0.905 18 C -0.118 4.118 19 C 0.185 3.815 20 N -0.622 5.622 21 C -0.249 4.249 22 H 0.081 0.919 23 C -0.061 4.061 24 N -0.949 5.949 25 Si 0.981 3.019 26 H -0.275 1.275 27 H -0.292 1.292 28 H -0.279 1.279 29 C 0.118 3.882 30 H 0.063 0.937 31 H 0.052 0.948 32 H 0.046 0.954 33 H 0.068 0.932 34 H 0.076 0.924 35 H 0.057 0.943 36 H 0.047 0.953 37 H 0.109 0.891 38 H 0.122 0.878 39 H 0.412 0.588 40 H 0.090 0.910 41 H 0.056 0.944 42 H 0.179 0.821 43 H 0.190 0.810 44 H 0.152 0.848 45 H 0.074 0.926 46 H 0.099 0.901 47 H 0.014 0.986 48 H 0.025 0.975 49 H 0.250 0.750 50 H 0.047 0.953 51 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.490 -8.479 24.146 26.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.158 4.158 3 C -0.142 4.142 4 C -0.173 4.173 5 C 0.297 3.703 6 O -0.469 6.469 7 N -0.365 5.365 8 C 0.053 3.947 9 C -0.112 4.112 10 C -0.119 4.119 11 C -0.103 4.103 12 N -0.177 5.177 13 C -0.154 4.154 14 C 0.040 3.960 15 O -0.206 6.206 16 C 0.025 3.975 17 H 0.113 0.887 18 C -0.156 4.156 19 C 0.061 3.939 20 N -0.350 5.350 21 C -0.377 4.377 22 H 0.099 0.901 23 C -0.254 4.254 24 N -0.597 5.597 25 Si 0.808 3.192 26 H -0.201 1.201 27 H -0.218 1.218 28 H -0.205 1.205 29 C -0.008 4.008 30 H 0.082 0.918 31 H 0.072 0.928 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.095 0.905 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.128 0.872 38 H 0.140 0.860 39 H 0.248 0.752 40 H 0.108 0.892 41 H 0.074 0.926 42 H 0.196 0.804 43 H 0.207 0.793 44 H 0.170 0.830 45 H 0.093 0.907 46 H 0.117 0.883 47 H 0.032 0.968 48 H 0.044 0.956 49 H 0.059 0.941 50 H 0.065 0.935 51 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -8.303 -7.839 23.863 26.455 hybrid contribution 0.143 0.502 -1.521 1.608 sum -8.160 -7.337 22.342 24.892 Atomic orbital electron populations 1.21790 0.95925 1.02025 1.01589 1.21526 0.95995 0.95324 1.02969 1.21333 0.93346 0.97510 1.01975 1.21746 0.97461 0.91586 1.06529 1.21393 0.81676 0.92824 0.74391 1.90692 1.56352 1.48243 1.51594 1.45956 1.07194 1.08413 1.74981 1.19844 0.87732 0.84412 1.02737 1.19753 0.95631 1.04687 0.91134 1.22322 0.95057 0.96344 0.98175 1.23258 0.92367 0.98263 0.96445 1.67555 1.41714 1.09358 0.99057 1.22974 0.90745 1.03805 0.97851 1.20143 0.92332 0.96535 0.86946 1.86139 1.35356 1.85225 1.13914 1.23605 0.94563 0.96585 0.82702 0.88709 1.22872 0.99709 1.00384 0.92673 1.20954 0.94152 0.86468 0.92372 1.44583 1.61223 1.21901 1.07293 1.19382 1.25116 1.01894 0.91355 0.90066 1.25664 1.02046 0.98665 0.99075 1.70136 1.49709 1.21541 1.18288 0.85131 0.78610 0.77646 0.77805 1.20069 1.21756 1.20491 1.21986 0.98187 0.95254 0.85324 0.91778 0.92846 0.93461 0.91352 0.90538 0.92442 0.93449 0.87249 0.86020 0.75170 0.89174 0.92597 0.80390 0.79273 0.83042 0.90737 0.88298 0.96812 0.95643 0.94084 0.93520 0.96034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.91 71.98 0.71 -1.16 16 2 C -0.12 -1.37 5.93 30.59 0.18 -1.19 16 3 C -0.10 -1.64 4.50 30.59 0.14 -1.50 16 4 C -0.13 -1.76 5.70 29.85 0.17 -1.59 16 5 C 0.51 10.65 7.83 87.66 0.69 11.34 16 6 O -0.59 -17.79 15.98 -3.02 -0.05 -17.84 16 7 N -0.71 -12.72 5.55 -466.78 -2.59 -15.31 16 8 C 0.18 3.61 5.54 85.63 0.47 4.08 16 9 C -0.10 -2.06 5.30 -19.58 -0.10 -2.16 16 10 C -0.10 -1.44 9.78 22.34 0.22 -1.22 16 11 C 0.05 0.93 11.18 84.68 0.95 1.87 16 12 N -0.47 -11.62 10.35 -195.45 -2.02 -13.65 16 13 C 0.00 0.09 10.20 84.82 0.87 0.96 16 14 C 0.09 2.28 6.69 22.60 0.15 2.43 16 15 O -0.30 -8.74 9.32 -92.56 -0.86 -9.61 16 16 C 0.08 2.76 2.90 32.08 0.09 2.85 16 17 H 0.10 2.99 5.99 -2.39 -0.01 2.97 16 18 C -0.12 -4.20 6.71 31.87 0.21 -3.98 16 19 C 0.19 8.96 5.37 86.73 0.47 9.43 16 20 N -0.62 -32.00 3.39 -691.97 -2.35 -34.34 16 21 C -0.25 -13.99 10.28 84.03 0.86 -13.12 16 22 H 0.08 4.38 7.83 -2.91 -0.02 4.36 16 23 C -0.06 -3.46 5.49 84.86 0.47 -2.99 16 24 N -0.95 -56.29 10.31 21.65 0.22 -56.07 16 25 Si 0.98 45.57 29.55 68.60 2.03 47.60 16 26 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 27 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 28 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 29 C 0.12 4.92 6.97 86.86 0.61 5.53 16 30 H 0.06 0.63 8.14 -2.39 -0.02 0.62 16 31 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 33 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.08 0.66 8.14 -2.39 -0.02 0.64 16 35 H 0.06 1.03 8.10 -2.39 -0.02 1.01 16 36 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 37 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.12 0.90 8.14 -2.38 -0.02 0.88 16 39 H 0.41 5.52 8.46 -92.71 -0.78 4.74 16 40 H 0.09 1.63 8.05 -2.39 -0.02 1.61 16 41 H 0.06 1.50 7.93 -2.38 -0.02 1.48 16 42 H 0.18 1.26 8.06 -2.91 -0.02 1.24 16 43 H 0.19 1.90 8.06 -2.91 -0.02 1.88 16 44 H 0.15 4.34 5.90 -2.91 -0.02 4.33 16 45 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 46 H 0.10 2.93 8.14 -2.39 -0.02 2.91 16 47 H 0.01 0.75 7.51 -2.39 -0.02 0.73 16 48 H 0.03 1.35 7.37 -2.39 -0.02 1.33 16 49 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 50 H 0.05 1.89 8.14 -2.39 -0.02 1.87 16 51 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 Total: -1.00 -73.87 415.27 1.66 -72.21 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: 0.14 Total: 17.45 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 7.15 Total: 9.56 kcal Atomic # 7 Polarization: -112.63 SS G_CDS: -6.74 Total: -119.37 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.91 Total: -27.44 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -73.87 1.66 -72.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001130313253.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.519 kcal (2) G-P(sol) polarization free energy of solvation -73.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.351 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.206 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds