Wall clock time and date at job start Wed Apr 1 2020 04:22:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46856 * 174.12672 * 3 2 1 5 5 C 1.52993 * 109.46843 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46932 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47188 * 179.97438 * 6 5 4 8 8 O 1.21275 * 119.99748 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99821 * 179.97438 * 7 6 5 10 10 C 1.47890 * 134.33985 * 180.02562 * 9 7 6 11 11 C 1.52386 * 85.59352 * 156.48652 * 10 9 7 12 12 C 1.47886 * 134.34474 * 359.97182 * 9 7 6 13 13 C 1.53637 * 116.37921 * 141.33966 * 11 10 9 14 14 C 1.54595 * 102.81370 * 95.34845 * 13 11 10 15 15 N 1.47557 * 107.32808 * 20.84134 * 14 13 11 16 16 C 1.46906 * 110.99755 * 123.21876 * 15 14 13 17 17 C 1.50699 * 109.47140 * 69.87674 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00058 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00409 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47268 * 90.00146 * 24 22 20 26 26 H 1.48500 * 109.47502 * 210.00166 * 24 22 20 27 27 H 1.48501 * 109.47054 * 330.00549 * 24 22 20 28 28 C 1.48139 * 108.68546 * 0.87288 * 15 14 13 29 29 H 4.44650 * 5.63349 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.47061 * 54.13335 * 3 2 1 31 31 H 1.08992 * 109.47373 * 294.12801 * 3 2 1 32 32 H 1.09000 * 109.47121 * 60.00132 * 4 3 2 33 33 H 1.09002 * 109.47372 * 300.00108 * 4 3 2 34 34 H 1.09003 * 109.47698 * 60.00158 * 5 4 3 35 35 H 1.09003 * 109.47130 * 299.99620 * 5 4 3 36 36 H 1.09000 * 109.47333 * 59.99895 * 6 5 4 37 37 H 1.08999 * 109.47349 * 299.99484 * 6 5 4 38 38 H 1.09000 * 113.85537 * 42.31825 * 10 9 7 39 39 H 1.09002 * 113.96434 * 270.66536 * 10 9 7 40 40 H 1.08999 * 113.85743 * 89.34816 * 12 9 7 41 41 H 1.08999 * 113.85213 * 317.67871 * 12 9 7 42 42 H 1.09001 * 110.74629 * 337.01966 * 13 11 10 43 43 H 1.09000 * 110.74819 * 213.67876 * 13 11 10 44 44 H 1.08999 * 109.87377 * 261.41188 * 14 13 11 45 45 H 1.08997 * 109.99576 * 140.34369 * 14 13 11 46 46 H 1.09004 * 109.47040 * 189.87611 * 16 15 14 47 47 H 1.09000 * 109.47033 * 309.87564 * 16 15 14 48 48 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 49 49 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 50 50 H 1.08999 * 110.41105 * 96.34150 * 28 15 14 51 51 H 1.09008 * 110.40619 * 218.76786 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1554 1.4359 -0.1476 5 6 4.6853 1.4365 -0.1483 6 6 5.1946 2.8717 -0.2952 7 6 6.7017 2.8725 -0.2952 8 8 7.3085 1.8280 -0.1878 9 7 7.3750 4.0339 -0.4147 10 6 8.8076 4.3989 -0.4526 11 6 8.3482 5.6507 -1.1903 12 6 6.9752 5.4502 -0.5609 13 6 9.0768 6.9567 -0.8381 14 6 10.1640 7.0489 -1.9334 15 7 9.7268 6.2009 -3.0590 16 6 9.6497 6.9771 -4.3039 17 6 11.0405 7.3410 -4.7559 18 8 12.0013 6.9880 -4.1053 19 7 11.2165 8.0587 -5.8830 20 6 12.4818 8.3892 -6.2945 21 1 13.3374 8.0749 -5.7152 22 6 12.6634 9.1287 -7.4568 23 7 11.6223 9.5107 -8.1620 24 14 14.3873 9.5797 -8.0172 25 1 14.9126 8.5146 -8.9087 26 1 14.3468 10.8676 -8.7553 27 1 15.2730 9.7155 -6.8330 28 6 8.4127 5.6056 -2.7224 29 1 -1.0502 -0.0004 0.0002 30 1 3.0097 -0.6013 -0.8328 31 1 3.0096 -0.4192 0.9378 32 1 2.7917 2.0379 0.6851 33 1 2.7918 1.8558 -1.0855 34 1 5.0486 0.8346 -0.9812 35 1 5.0492 1.0165 0.7895 36 1 4.8314 3.4733 0.5380 37 1 4.8308 3.2922 -1.2327 38 1 9.4173 3.7289 -1.0587 39 1 9.2397 4.5988 0.5279 40 1 6.8446 5.9715 0.3873 41 1 6.1467 5.6052 -1.2520 42 1 9.5300 6.8913 0.1511 43 1 8.3966 7.8063 -0.8969 44 1 11.1147 6.6855 -1.5433 45 1 10.2706 8.0811 -2.2667 46 1 9.1617 6.3804 -5.0745 47 1 9.0746 7.8866 -4.1299 48 1 10.4481 8.3406 -6.4035 49 1 11.7491 10.0272 -8.9732 50 1 7.6055 6.1972 -3.1543 51 1 8.3606 4.5754 -3.0749 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001147374758.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:25 Heat of formation + Delta-G solvation = 12.424593 kcal Electronic energy + Delta-G solvation = -29275.380716 eV Core-core repulsion = 25177.072707 eV Total energy + Delta-G solvation = -4098.308009 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.15026 -39.16454 -38.15643 -36.58418 -36.22799 -33.86514 -33.53593 -31.77901 -31.14783 -30.39961 -29.06478 -27.60570 -26.83437 -25.66721 -24.66940 -23.90109 -21.63457 -21.20163 -19.77805 -19.12134 -18.77325 -18.40009 -17.83053 -17.13387 -16.54900 -16.28996 -15.99262 -15.66260 -15.46077 -14.99599 -14.62370 -14.59041 -14.47544 -14.04441 -13.84129 -13.62281 -13.44316 -13.31388 -13.17694 -12.87635 -12.56842 -12.26129 -12.12226 -12.08392 -11.93918 -11.80800 -11.63201 -11.47539 -11.35939 -11.14231 -11.08380 -11.02233 -10.88574 -10.59259 -10.56984 -10.47983 -10.38678 -10.20600 -9.86357 -9.48347 -8.93166 -8.44260 -7.95373 -7.89238 -6.40458 -3.81052 2.39131 2.44493 2.46008 2.57295 3.18720 3.27208 3.32859 3.81177 3.89391 3.93107 4.10921 4.18724 4.25157 4.39454 4.47198 4.52867 4.66606 4.80180 4.87438 4.88411 5.02304 5.05250 5.08867 5.14543 5.23157 5.25395 5.27569 5.30097 5.37313 5.41927 5.52532 5.56442 5.60378 5.62589 5.65173 5.67997 5.75071 5.78813 5.82853 5.89751 5.93461 5.96015 6.07457 6.30352 6.42634 7.22374 7.23333 7.24000 7.47473 7.56388 7.96161 8.07833 8.63699 9.19948 9.56351 10.08532 10.77423 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.001543 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.392487 B =18143.235497 C =18868.160966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.185 4.185 3 C -0.015 4.015 4 C -0.114 4.114 5 C -0.105 4.105 6 C -0.134 4.134 7 C 0.533 3.467 8 O -0.541 6.541 9 N -0.646 5.646 10 C 0.128 3.872 11 C -0.103 4.103 12 C 0.116 3.884 13 C -0.130 4.130 14 C 0.058 3.942 15 N -0.505 5.505 16 C 0.041 3.959 17 C 0.444 3.556 18 O -0.576 6.576 19 N -0.567 5.567 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.069 3.931 29 H 0.216 0.784 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.074 0.926 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.086 0.914 40 H 0.090 0.910 41 H 0.084 0.916 42 H 0.078 0.922 43 H 0.073 0.927 44 H 0.083 0.917 45 H 0.057 0.943 46 H 0.087 0.913 47 H 0.049 0.951 48 H 0.391 0.609 49 H 0.271 0.729 50 H 0.052 0.948 51 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.704 -9.337 17.025 28.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.185 4.185 3 C -0.052 4.052 4 C -0.152 4.152 5 C -0.143 4.143 6 C -0.174 4.174 7 C 0.323 3.677 8 O -0.419 6.419 9 N -0.382 5.382 10 C 0.006 3.994 11 C -0.105 4.105 12 C -0.007 4.007 13 C -0.169 4.169 14 C -0.070 4.070 15 N -0.229 5.229 16 C -0.091 4.091 17 C 0.229 3.771 18 O -0.459 6.459 19 N -0.204 5.204 20 C -0.427 4.427 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.059 4.059 29 H 0.233 0.767 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.092 0.908 35 H 0.091 0.909 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.109 0.891 39 H 0.104 0.896 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.092 0.908 44 H 0.102 0.898 45 H 0.075 0.925 46 H 0.105 0.895 47 H 0.067 0.933 48 H 0.224 0.776 49 H 0.081 0.919 50 H 0.070 0.930 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -19.455 -10.614 17.265 28.094 hybrid contribution -0.548 1.249 -0.653 1.512 sum -20.003 -9.365 16.612 27.637 Atomic orbital electron populations 1.24937 0.96022 1.00843 1.01459 1.23222 0.94659 1.00423 1.00192 1.18769 0.84522 0.98271 1.03614 1.21556 0.95248 0.95587 1.02767 1.21363 0.93947 0.95107 1.03917 1.21618 0.91632 0.99857 1.04312 1.20420 0.89856 0.82023 0.75433 1.90718 1.70523 1.30711 1.49908 1.50248 1.09156 1.05771 1.73019 1.22946 0.83149 0.93419 0.99857 1.22430 0.95417 0.95950 0.96690 1.23044 0.97452 0.79916 1.00275 1.22645 0.98191 0.95691 1.00366 1.22770 0.98024 0.96603 0.89567 1.63317 1.24322 1.33030 1.02185 1.22082 0.97278 0.96669 0.93024 1.19740 0.89875 0.83768 0.83696 1.90521 1.41733 1.57296 1.56359 1.41860 1.09160 1.47612 1.21745 1.19694 0.85135 1.30946 1.06956 0.87958 1.25240 0.99276 0.97149 0.96266 1.69613 1.29744 1.38363 1.16757 0.85870 0.81911 0.77754 0.78830 1.20421 1.20979 1.19446 1.22626 0.90997 1.00768 0.91514 0.76715 0.89326 0.89412 0.91499 0.91389 0.90754 0.90923 0.89094 0.88926 0.89133 0.89588 0.89208 0.89720 0.90302 0.90837 0.89822 0.92490 0.89505 0.93300 0.77568 0.91939 0.93002 0.90029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -1.50 19.25 29.55 0.57 -0.93 16 2 C -0.18 -1.44 13.34 -37.12 -0.50 -1.93 16 3 C -0.02 -0.09 5.70 -29.52 -0.17 -0.26 16 4 C -0.11 -0.64 5.17 -26.73 -0.14 -0.78 16 5 C -0.11 -0.74 4.50 -26.74 -0.12 -0.86 16 6 C -0.13 -0.94 5.44 -27.88 -0.15 -1.09 16 7 C 0.53 5.86 8.06 -10.98 -0.09 5.77 16 8 O -0.54 -8.22 16.71 5.56 0.09 -8.13 16 9 N -0.65 -6.30 3.62 -186.83 -0.68 -6.98 16 10 C 0.13 1.33 8.14 -3.59 -0.03 1.31 16 11 C -0.10 -0.97 0.99 -154.85 -0.15 -1.12 16 12 C 0.12 0.80 7.98 -3.60 -0.03 0.77 16 13 C -0.13 -1.24 6.35 -25.56 -0.16 -1.40 16 14 C 0.06 0.84 5.67 -2.63 -0.01 0.82 16 15 N -0.50 -7.95 4.86 -233.13 -1.13 -9.08 16 16 C 0.04 0.71 5.03 -4.97 -0.02 0.68 16 17 C 0.44 10.34 7.43 -10.99 -0.08 10.26 16 18 O -0.58 -15.42 15.12 5.55 0.08 -15.33 16 19 N -0.57 -14.22 5.29 -10.96 -0.06 -14.28 16 20 C -0.30 -8.26 9.68 -14.93 -0.14 -8.41 16 21 H 0.10 2.98 7.16 -52.48 -0.38 2.61 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 24 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 25 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 27 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 28 C 0.07 0.80 6.09 -2.93 -0.02 0.79 16 29 H 0.22 0.80 7.80 -54.08 -0.42 0.38 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.60 8.10 -51.93 -0.42 0.18 16 35 H 0.07 0.56 8.10 -51.93 -0.42 0.14 16 36 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.09 1.14 8.12 -51.93 -0.42 0.72 16 39 H 0.09 0.79 8.04 -51.93 -0.42 0.37 16 40 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.46 8.12 -51.93 -0.42 0.04 16 42 H 0.08 0.65 7.99 -51.93 -0.41 0.24 16 43 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 45 H 0.06 0.91 7.31 -51.93 -0.38 0.53 16 46 H 0.09 1.38 8.07 -51.93 -0.42 0.96 16 47 H 0.05 0.75 7.96 -51.93 -0.41 0.34 16 48 H 0.39 9.38 7.90 -40.82 -0.32 9.06 16 49 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 50 H 0.05 0.53 7.80 -51.93 -0.40 0.13 16 51 H 0.08 1.03 8.07 -51.92 -0.42 0.61 16 LS Contribution 425.97 15.07 6.42 6.42 Total: -1.00 -34.68 425.97 -9.53 -44.20 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: -8.61 Total: 6.82 kcal Atomic # 6 Polarization: 5.44 SS G_CDS: -1.35 Total: 4.10 kcal Atomic # 7 Polarization: -52.92 SS G_CDS: -1.14 Total: -54.06 kcal Atomic # 8 Polarization: -23.64 SS G_CDS: 0.18 Total: -23.46 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -34.68 -9.53 -44.20 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147374758.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.629 kcal (2) G-P(sol) polarization free energy of solvation -34.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.953 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.204 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds