Wall clock time and date at job start Wed Apr 1 2020 04:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17406 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46856 * 174.12672 * 3 2 1 5 5 C 1.52993 * 109.46843 * 180.02562 * 4 3 2 6 6 C 1.52999 * 109.46932 * 180.02562 * 5 4 3 7 7 C 1.50707 * 109.47188 * 179.97438 * 6 5 4 8 8 O 1.21275 * 119.99748 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99821 * 179.97438 * 7 6 5 10 10 C 1.47890 * 134.33985 * 180.02562 * 9 7 6 11 11 C 1.52386 * 85.59352 * 156.48652 * 10 9 7 12 12 C 1.47886 * 134.34474 * 359.97182 * 9 7 6 13 13 C 1.53637 * 116.37921 * 141.33966 * 11 10 9 14 14 C 1.54595 * 102.81370 * 95.34845 * 13 11 10 15 15 N 1.47557 * 107.32808 * 20.84134 * 14 13 11 16 16 C 1.46906 * 110.99755 * 123.21876 * 15 14 13 17 17 C 1.50699 * 109.47140 * 69.87674 * 16 15 14 18 18 O 1.21289 * 119.99678 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99614 * 180.02562 * 17 16 15 20 20 C 1.37097 * 119.99518 * 180.02562 * 19 17 16 21 21 H 1.08003 * 120.00058 * 359.97438 * 20 19 17 22 22 C 1.38949 * 120.00085 * 179.97438 * 20 19 17 23 23 N 1.31416 * 119.99807 * 359.97438 * 22 20 19 24 24 Si 1.86793 * 120.00409 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.47268 * 90.00146 * 24 22 20 26 26 H 1.48500 * 109.47502 * 210.00166 * 24 22 20 27 27 H 1.48501 * 109.47054 * 330.00549 * 24 22 20 28 28 C 1.48139 * 108.68546 * 0.87288 * 15 14 13 29 29 H 4.44650 * 5.63349 * 180.02562 * 4 1 2 30 30 H 1.09004 * 109.47061 * 54.13335 * 3 2 1 31 31 H 1.08992 * 109.47373 * 294.12801 * 3 2 1 32 32 H 1.09000 * 109.47121 * 60.00132 * 4 3 2 33 33 H 1.09002 * 109.47372 * 300.00108 * 4 3 2 34 34 H 1.09003 * 109.47698 * 60.00158 * 5 4 3 35 35 H 1.09003 * 109.47130 * 299.99620 * 5 4 3 36 36 H 1.09000 * 109.47333 * 59.99895 * 6 5 4 37 37 H 1.08999 * 109.47349 * 299.99484 * 6 5 4 38 38 H 1.09000 * 113.85537 * 42.31825 * 10 9 7 39 39 H 1.09002 * 113.96434 * 270.66536 * 10 9 7 40 40 H 1.08999 * 113.85743 * 89.34816 * 12 9 7 41 41 H 1.08999 * 113.85213 * 317.67871 * 12 9 7 42 42 H 1.09001 * 110.74629 * 337.01966 * 13 11 10 43 43 H 1.09000 * 110.74819 * 213.67876 * 13 11 10 44 44 H 1.08999 * 109.87377 * 261.41188 * 14 13 11 45 45 H 1.08997 * 109.99576 * 140.34369 * 14 13 11 46 46 H 1.09004 * 109.47040 * 189.87611 * 16 15 14 47 47 H 1.09000 * 109.47033 * 309.87564 * 16 15 14 48 48 H 0.96996 * 120.00269 * 359.97438 * 19 17 16 49 49 H 0.97002 * 120.00022 * 179.97438 * 23 22 20 50 50 H 1.08999 * 110.41105 * 96.34150 * 28 15 14 51 51 H 1.09008 * 110.40619 * 218.76786 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1741 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 6 3.1554 1.4359 -0.1476 5 6 4.6853 1.4365 -0.1483 6 6 5.1946 2.8717 -0.2952 7 6 6.7017 2.8725 -0.2952 8 8 7.3085 1.8280 -0.1878 9 7 7.3750 4.0339 -0.4147 10 6 8.8076 4.3989 -0.4526 11 6 8.3482 5.6507 -1.1903 12 6 6.9752 5.4502 -0.5609 13 6 9.0768 6.9567 -0.8381 14 6 10.1640 7.0489 -1.9334 15 7 9.7268 6.2009 -3.0590 16 6 9.6497 6.9771 -4.3039 17 6 11.0405 7.3410 -4.7559 18 8 12.0013 6.9880 -4.1053 19 7 11.2165 8.0587 -5.8830 20 6 12.4818 8.3892 -6.2945 21 1 13.3374 8.0749 -5.7152 22 6 12.6634 9.1287 -7.4568 23 7 11.6223 9.5107 -8.1620 24 14 14.3873 9.5797 -8.0172 25 1 14.9126 8.5146 -8.9087 26 1 14.3468 10.8676 -8.7553 27 1 15.2730 9.7155 -6.8330 28 6 8.4127 5.6056 -2.7224 29 1 -1.0502 -0.0004 0.0002 30 1 3.0097 -0.6013 -0.8328 31 1 3.0096 -0.4192 0.9378 32 1 2.7917 2.0379 0.6851 33 1 2.7918 1.8558 -1.0855 34 1 5.0486 0.8346 -0.9812 35 1 5.0492 1.0165 0.7895 36 1 4.8314 3.4733 0.5380 37 1 4.8308 3.2922 -1.2327 38 1 9.4173 3.7289 -1.0587 39 1 9.2397 4.5988 0.5279 40 1 6.8446 5.9715 0.3873 41 1 6.1467 5.6052 -1.2520 42 1 9.5300 6.8913 0.1511 43 1 8.3966 7.8063 -0.8969 44 1 11.1147 6.6855 -1.5433 45 1 10.2706 8.0811 -2.2667 46 1 9.1617 6.3804 -5.0745 47 1 9.0746 7.8866 -4.1299 48 1 10.4481 8.3406 -6.4035 49 1 11.7491 10.0272 -8.9732 50 1 7.6055 6.1972 -3.1543 51 1 8.3606 4.5754 -3.0749 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001147374758.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:22:24 Heat of formation + Delta-G solvation = -11.358150 kcal Electronic energy + Delta-G solvation = -29276.412013 eV Core-core repulsion = 25177.072707 eV Total energy + Delta-G solvation = -4099.339306 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.97214 -40.35458 -39.60370 -37.57691 -36.93939 -35.86861 -34.09548 -33.31413 -32.66113 -31.07050 -29.91803 -28.86734 -27.55293 -26.89576 -25.80594 -24.96567 -22.42869 -22.12917 -20.97416 -20.43403 -19.84781 -19.55003 -18.86502 -17.92658 -17.66176 -17.22697 -17.16641 -16.57219 -16.39784 -16.36172 -16.13740 -15.56969 -15.44610 -15.19409 -15.11894 -14.65600 -14.34900 -14.24199 -13.97843 -13.80421 -13.71219 -13.53378 -13.33736 -13.11517 -12.89994 -12.80313 -12.67355 -12.55460 -12.41463 -12.38347 -12.16136 -12.11589 -11.98667 -11.90012 -11.59922 -11.48417 -11.40448 -11.11625 -10.96538 -10.68764 -10.29882 -9.98813 -9.70933 -9.14163 -8.45376 -5.93702 1.38200 1.41845 1.54252 1.65912 1.80743 1.93651 1.94013 2.08475 2.29340 2.78177 3.21564 3.26853 3.38946 3.42741 3.57455 3.66330 3.78922 3.96368 4.03987 4.05527 4.27529 4.33984 4.38552 4.42310 4.43718 4.45298 4.54234 4.59541 4.60215 4.64466 4.68755 4.73079 4.77497 4.80908 4.87455 4.91629 4.93598 4.99134 5.03240 5.11509 5.18014 5.22747 5.31471 5.34090 5.41994 5.45182 5.91609 6.09548 6.16474 6.63134 6.73241 6.74914 7.15131 7.16996 7.59031 8.15599 8.72053 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.019890 B = 0.001543 C = 0.001484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.392487 B =18143.235497 C =18868.160966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.216 4.216 3 C -0.019 4.019 4 C -0.102 4.102 5 C -0.102 4.102 6 C -0.125 4.125 7 C 0.523 3.477 8 O -0.597 6.597 9 N -0.648 5.648 10 C 0.117 3.883 11 C -0.096 4.096 12 C 0.132 3.868 13 C -0.112 4.112 14 C 0.056 3.944 15 N -0.535 5.535 16 C 0.056 3.944 17 C 0.440 3.560 18 O -0.617 6.617 19 N -0.576 5.576 20 C -0.333 4.333 21 H 0.076 0.924 22 C -0.011 4.011 23 N -0.920 5.920 24 Si 0.991 3.009 25 H -0.273 1.273 26 H -0.269 1.269 27 H -0.274 1.274 28 C 0.070 3.930 29 H 0.241 0.759 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.056 0.944 35 H 0.060 0.940 36 H 0.118 0.882 37 H 0.113 0.887 38 H 0.056 0.944 39 H 0.099 0.901 40 H 0.121 0.879 41 H 0.111 0.889 42 H 0.095 0.905 43 H 0.099 0.901 44 H 0.051 0.949 45 H 0.037 0.963 46 H 0.104 0.896 47 H 0.075 0.925 48 H 0.396 0.604 49 H 0.277 0.723 50 H 0.078 0.922 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.585 -7.877 17.715 30.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.216 4.216 3 C -0.055 4.055 4 C -0.140 4.140 5 C -0.140 4.140 6 C -0.164 4.164 7 C 0.315 3.685 8 O -0.479 6.479 9 N -0.382 5.382 10 C -0.006 4.006 11 C -0.098 4.098 12 C 0.010 3.990 13 C -0.150 4.150 14 C -0.072 4.072 15 N -0.260 5.260 16 C -0.075 4.075 17 C 0.227 3.773 18 O -0.503 6.503 19 N -0.214 5.214 20 C -0.462 4.462 21 H 0.094 0.906 22 C -0.211 4.211 23 N -0.561 5.561 24 Si 0.814 3.186 25 H -0.199 1.199 26 H -0.194 1.194 27 H -0.198 1.198 28 C -0.056 4.056 29 H 0.257 0.743 30 H 0.107 0.893 31 H 0.109 0.891 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.136 0.864 37 H 0.131 0.869 38 H 0.074 0.926 39 H 0.117 0.883 40 H 0.139 0.861 41 H 0.129 0.871 42 H 0.113 0.887 43 H 0.118 0.882 44 H 0.069 0.931 45 H 0.056 0.944 46 H 0.122 0.878 47 H 0.093 0.907 48 H 0.230 0.770 49 H 0.087 0.913 50 H 0.096 0.904 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -22.381 -9.120 17.949 30.104 hybrid contribution 0.389 0.741 -0.860 1.200 sum -21.992 -8.379 17.089 29.084 Atomic orbital electron populations 1.25705 0.96976 0.99995 1.00634 1.23719 0.95534 1.01297 1.01042 1.18830 0.84054 0.98779 1.03872 1.21444 0.93866 0.95371 1.03294 1.21290 0.94875 0.95224 1.02570 1.21651 0.88338 1.00056 1.06385 1.21207 0.91468 0.81457 0.74366 1.90692 1.71872 1.32756 1.52547 1.50374 1.08843 1.06984 1.72049 1.22990 0.83716 0.93606 1.00257 1.22308 0.97479 0.95044 0.94951 1.23254 0.96166 0.77568 1.01973 1.22557 0.96819 0.96588 0.99072 1.22676 0.98722 0.94870 0.90883 1.63151 1.27389 1.33392 1.02036 1.21902 0.93043 0.98318 0.94238 1.20875 0.92126 0.81907 0.82375 1.90491 1.44053 1.58424 1.57328 1.41924 1.08488 1.48364 1.22578 1.19636 0.85734 1.32881 1.07975 0.90559 1.25983 1.03028 0.96387 0.95701 1.69668 1.31247 1.38269 1.16961 0.84964 0.77386 0.78016 0.78187 1.19856 1.19411 1.19841 1.22636 0.89632 0.99912 0.93466 0.74269 0.89319 0.89060 0.90637 0.90963 0.92518 0.92139 0.86431 0.86898 0.92552 0.88299 0.86117 0.87075 0.88685 0.88209 0.93066 0.94404 0.87817 0.90678 0.77033 0.91349 0.90374 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.68 19.25 74.32 1.43 -1.25 16 2 C -0.22 -3.13 13.34 31.12 0.42 -2.71 16 3 C -0.02 -0.22 5.70 28.79 0.16 -0.05 16 4 C -0.10 -0.98 5.17 30.59 0.16 -0.82 16 5 C -0.10 -1.33 4.50 30.59 0.14 -1.19 16 6 C -0.12 -1.41 5.44 29.85 0.16 -1.25 16 7 C 0.52 10.92 8.06 87.66 0.71 11.62 16 8 O -0.60 -18.69 16.71 -3.01 -0.05 -18.74 16 9 N -0.65 -11.27 3.62 -863.38 -3.12 -14.40 16 10 C 0.12 2.35 8.14 85.91 0.70 3.05 16 11 C -0.10 -1.55 0.99 -52.16 -0.05 -1.60 16 12 C 0.13 1.19 7.98 85.90 0.69 1.87 16 13 C -0.11 -1.82 6.35 31.35 0.20 -1.62 16 14 C 0.06 1.62 5.67 86.72 0.49 2.12 16 15 N -0.53 -16.68 4.86 -891.48 -4.33 -21.01 16 16 C 0.06 1.90 5.03 85.56 0.43 2.33 16 17 C 0.44 21.00 7.43 87.66 0.65 21.65 16 18 O -0.62 -34.59 15.12 -3.06 -0.05 -34.63 16 19 N -0.58 -29.58 5.29 -306.99 -1.62 -31.20 16 20 C -0.33 -19.01 9.68 84.04 0.81 -18.20 16 21 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 22 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 23 N -0.92 -49.53 13.05 21.66 0.28 -49.25 16 24 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 25 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 26 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 27 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 28 C 0.07 1.51 6.09 86.20 0.53 2.03 16 29 H 0.24 1.26 7.80 -4.41 -0.03 1.22 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 33 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 34 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 35 H 0.06 0.93 8.10 -2.39 -0.02 0.91 16 36 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 37 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.06 1.51 8.12 -2.39 -0.02 1.49 16 39 H 0.10 1.71 8.04 -2.39 -0.02 1.69 16 40 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 41 H 0.11 0.52 8.12 -2.39 -0.02 0.50 16 42 H 0.09 1.29 7.99 -2.39 -0.02 1.27 16 43 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.05 1.76 8.14 -2.39 -0.02 1.74 16 45 H 0.04 1.21 7.31 -2.39 -0.02 1.19 16 46 H 0.10 3.14 8.07 -2.38 -0.02 3.12 16 47 H 0.08 2.15 7.96 -2.39 -0.02 2.13 16 48 H 0.40 19.19 7.90 -92.71 -0.73 18.46 16 49 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 50 H 0.08 1.29 7.80 -2.39 -0.02 1.28 16 51 H 0.07 1.64 8.07 -2.38 -0.02 1.62 16 Total: -1.00 -80.45 425.97 1.40 -79.05 By element: Atomic # 1 Polarization: 28.99 SS G_CDS: 0.18 Total: 29.17 kcal Atomic # 6 Polarization: 7.76 SS G_CDS: 8.09 Total: 15.85 kcal Atomic # 7 Polarization: -107.06 SS G_CDS: -8.79 Total: -115.86 kcal Atomic # 8 Polarization: -53.28 SS G_CDS: -0.10 Total: -53.38 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -80.45 1.40 -79.05 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001147374758.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.689 kcal (2) G-P(sol) polarization free energy of solvation -80.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds