Wall clock time and date at job start Wed Apr 1 2020 05:18:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46949 * 2 1 4 4 C 1.53001 * 109.46806 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47077 * 304.99806 * 4 3 2 6 6 C 1.50703 * 109.46771 * 185.00254 * 4 3 2 7 7 O 1.21283 * 119.99488 * 239.99768 * 6 4 3 8 8 N 1.34777 * 120.00290 * 60.00208 * 6 4 3 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 4 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 8 12 12 C 1.46903 * 111.00106 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47212 * 179.97438 * 12 11 10 14 14 O 1.21292 * 119.99995 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00130 * 179.97438 * 13 12 11 16 16 C 1.37095 * 120.00317 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00114 * 0.02562 * 16 15 13 18 18 C 1.38954 * 120.00461 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00124 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99769 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47036 * 90.00088 * 20 18 16 22 22 H 1.48491 * 109.47438 * 210.00285 * 20 18 16 23 23 H 1.48501 * 109.47130 * 330.00477 * 20 18 16 24 24 C 1.50701 * 109.47098 * 65.00199 * 4 3 2 25 25 C 1.38231 * 119.99979 * 59.72493 * 24 4 3 26 26 C 1.38236 * 119.99842 * 179.80856 * 25 24 4 27 27 C 1.38235 * 119.99770 * 0.40033 * 26 25 24 28 28 C 1.38234 * 120.00146 * 359.85534 * 27 26 25 29 29 C 1.38230 * 119.99535 * 239.99777 * 24 4 3 30 30 H 1.09004 * 109.46623 * 60.00178 * 1 2 3 31 31 H 1.09005 * 109.46800 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47358 * 300.00413 * 1 2 3 33 33 H 1.08996 * 109.47358 * 239.99587 * 2 1 3 34 34 H 1.09004 * 109.46623 * 119.99822 * 2 1 3 35 35 H 1.09002 * 109.47009 * 59.99635 * 3 2 1 36 36 H 1.08999 * 109.47116 * 299.99800 * 3 2 1 37 37 H 0.97001 * 119.99727 * 359.97438 * 8 6 4 38 38 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 39 39 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 40 40 H 1.09004 * 109.47066 * 299.99732 * 10 9 8 41 41 H 1.09000 * 109.47665 * 59.99541 * 10 9 8 42 42 H 1.00898 * 111.00589 * 56.04557 * 11 10 9 43 43 H 1.08999 * 109.46866 * 299.99546 * 12 11 10 44 44 H 1.09000 * 109.47494 * 59.99570 * 12 11 10 45 45 H 0.97000 * 120.00374 * 359.97438 * 15 13 12 46 46 H 0.97000 * 119.99592 * 179.97438 * 19 18 16 47 47 H 1.07998 * 119.99812 * 359.97438 * 25 24 4 48 48 H 1.07995 * 120.00000 * 180.23032 * 26 25 24 49 49 H 1.08000 * 119.99823 * 179.83567 * 27 26 25 50 50 H 1.08004 * 120.00231 * 179.97438 * 28 27 26 51 51 H 1.08006 * 120.00428 * 359.97438 * 29 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0723 2.8580 0.1245 7 8 4.7699 3.3322 -0.7468 8 7 3.7463 3.5967 1.2036 9 6 4.2295 4.9747 1.3211 10 6 3.7145 5.5863 2.6254 11 7 4.1985 6.9683 2.7430 12 6 3.7230 7.5887 3.9867 13 6 4.2390 9.0020 4.0723 14 8 4.9348 9.4484 3.1848 15 7 3.9272 9.7700 5.1351 16 6 4.3970 11.0556 5.2132 17 1 5.0166 11.4531 4.4229 18 6 4.0761 11.8473 6.3091 19 7 4.5260 13.0797 6.3837 20 14 3.0039 11.1601 7.6757 21 1 3.8627 10.5193 8.7039 22 1 2.2267 12.2623 8.2969 23 1 2.0700 10.1521 7.1127 24 6 4.0729 0.8419 -1.2868 25 6 3.7348 1.4183 -2.4968 26 6 4.1993 0.8697 -3.6775 27 6 4.9951 -0.2603 -3.6485 28 6 5.3289 -0.8398 -2.4387 29 6 4.8676 -0.2888 -1.2578 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9564 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.1880 3.2174 1.9004 38 1 5.3196 4.9785 1.3236 39 1 3.8661 5.5604 0.4768 40 1 2.6244 5.5826 2.6230 41 1 4.0778 5.0006 3.4699 42 1 3.9287 7.5156 1.9394 43 1 2.6331 7.5984 3.9943 44 1 4.0872 7.0170 4.8403 45 1 3.3705 9.4132 5.8447 46 1 4.3016 13.6324 7.1486 47 1 3.1099 2.2989 -2.5196 48 1 3.9383 1.3222 -4.6227 49 1 5.3559 -0.6905 -4.5711 50 1 5.9503 -1.7228 -2.4161 51 1 5.1285 -0.7415 -0.3126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150057630.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:37 Heat of formation + Delta-G solvation = -57.852707 kcal Electronic energy + Delta-G solvation = -28988.735278 eV Core-core repulsion = 24887.379816 eV Total energy + Delta-G solvation = -4101.355462 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.72843 -39.00683 -38.50959 -36.46173 -36.08449 -34.42838 -33.81410 -32.54713 -31.68853 -31.15306 -29.99613 -28.70403 -26.30719 -25.13661 -23.74399 -23.02724 -22.45336 -22.02616 -21.43643 -20.13540 -19.42407 -18.41155 -17.42436 -17.26621 -16.30543 -16.25399 -16.02422 -15.76801 -15.45488 -15.12283 -14.95375 -14.85536 -14.39658 -14.20423 -13.86580 -13.80022 -13.60996 -13.53050 -13.38714 -13.08758 -12.90289 -12.74961 -12.56533 -12.31428 -12.20634 -11.91791 -11.81310 -11.61196 -11.60499 -11.53230 -11.35121 -11.17748 -11.15277 -11.02526 -10.61820 -10.01282 -9.98585 -9.59486 -9.29965 -9.12577 -8.97744 -8.65096 -8.26385 -8.19354 -6.32648 -3.84293 1.06740 1.18294 2.39112 2.81824 3.00017 3.04983 3.13293 3.56358 3.70951 4.06169 4.08348 4.14424 4.27322 4.48184 4.61344 4.64019 4.68309 4.76203 4.77940 4.85124 4.87983 4.90954 5.01286 5.08478 5.17152 5.20139 5.27192 5.29598 5.31314 5.36423 5.45247 5.53933 5.64219 5.68390 5.73252 5.75008 5.77516 5.78587 5.83295 5.86143 5.90981 6.15238 6.19927 6.27275 6.33392 6.73825 6.95062 7.21871 7.45412 7.56013 7.98061 8.12616 8.57641 8.93197 9.40301 9.80130 10.80430 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020146 B = 0.001536 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.535687 B =18227.026614 C =19166.438805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.109 4.109 4 C -0.068 4.068 5 H 0.105 0.895 6 C 0.516 3.484 7 O -0.525 6.525 8 N -0.729 5.729 9 C 0.120 3.880 10 C 0.050 3.950 11 N -0.666 5.666 12 C 0.050 3.950 13 C 0.449 3.551 14 O -0.563 6.563 15 N -0.590 5.590 16 C -0.306 4.306 17 H 0.120 0.880 18 C 0.042 3.958 19 N -0.880 5.880 20 Si 0.881 3.119 21 H -0.270 1.270 22 H -0.277 1.277 23 H -0.270 1.270 24 C -0.063 4.063 25 C -0.084 4.084 26 C -0.121 4.121 27 C -0.121 4.121 28 C -0.124 4.124 29 C -0.113 4.113 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.399 0.601 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.033 0.967 41 H 0.077 0.923 42 H 0.354 0.646 43 H 0.046 0.954 44 H 0.088 0.912 45 H 0.370 0.630 46 H 0.273 0.727 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.119 0.881 50 H 0.120 0.880 51 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.866 -33.018 -12.180 36.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.160 4.160 3 C -0.146 4.146 4 C -0.090 4.090 5 H 0.123 0.877 6 C 0.301 3.699 7 O -0.400 6.400 8 N -0.381 5.381 9 C -0.004 4.004 10 C -0.080 4.080 11 N -0.299 5.299 12 C -0.083 4.083 13 C 0.234 3.766 14 O -0.445 6.445 15 N -0.229 5.229 16 C -0.435 4.435 17 H 0.138 0.862 18 C -0.161 4.161 19 N -0.520 5.520 20 Si 0.707 3.293 21 H -0.196 1.196 22 H -0.202 1.202 23 H -0.196 1.196 24 C -0.063 4.063 25 C -0.102 4.102 26 C -0.139 4.139 27 C -0.139 4.139 28 C -0.142 4.142 29 C -0.131 4.131 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.233 0.767 38 H 0.099 0.901 39 H 0.087 0.913 40 H 0.051 0.949 41 H 0.095 0.905 42 H 0.174 0.826 43 H 0.064 0.936 44 H 0.107 0.893 45 H 0.203 0.797 46 H 0.084 0.916 47 H 0.136 0.864 48 H 0.138 0.862 49 H 0.137 0.863 50 H 0.138 0.862 51 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.249 -32.297 -13.036 35.575 hybrid contribution -1.990 -0.312 1.458 2.486 sum -9.238 -32.609 -11.577 35.815 Atomic orbital electron populations 1.21772 0.95584 1.01768 1.01927 1.21528 0.95983 0.95910 1.02564 1.21660 0.91546 0.98298 1.03123 1.20390 0.97305 0.93600 0.97682 0.87731 1.20433 0.80420 0.87410 0.81597 1.90762 1.36892 1.72592 1.39762 1.45908 1.54236 1.14582 1.23410 1.21278 1.00693 0.80934 0.97485 1.22079 0.97133 0.91369 0.97435 1.59905 1.63549 1.01394 1.05042 1.21700 0.97539 0.95325 0.93709 1.19671 0.85813 0.86775 0.84334 1.90580 1.40509 1.73941 1.39448 1.42191 1.47219 1.13620 1.19885 1.19443 1.29863 0.86218 1.07959 0.86249 1.25043 0.97876 0.95474 0.97753 1.69623 1.44561 1.07125 1.30716 0.86661 0.80742 0.79200 0.82693 1.19592 1.20177 1.19567 1.19214 0.98174 0.95523 0.93396 1.20892 0.99031 0.98479 0.91813 1.21123 0.98323 0.96362 0.98136 1.21142 0.98471 0.96358 0.97905 1.21069 1.00334 1.00246 0.92508 1.20986 0.97734 0.96005 0.98340 0.92689 0.92649 0.92653 0.91451 0.91784 0.91053 0.90984 0.76710 0.90138 0.91321 0.94921 0.90452 0.82611 0.93613 0.89337 0.79695 0.91590 0.86439 0.86171 0.86281 0.86175 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.34 16 2 C -0.12 -0.59 5.75 -26.73 -0.15 -0.75 16 3 C -0.11 -0.59 4.52 -26.73 -0.12 -0.71 16 4 C -0.07 -0.49 2.38 -92.92 -0.22 -0.71 16 5 H 0.10 0.56 7.88 -51.93 -0.41 0.15 16 6 C 0.52 5.25 7.03 -10.98 -0.08 5.18 16 7 O -0.53 -7.71 15.13 5.55 0.08 -7.62 16 8 N -0.73 -6.06 5.42 -60.30 -0.33 -6.39 16 9 C 0.12 1.28 5.93 -4.04 -0.02 1.25 16 10 C 0.05 0.51 5.80 -3.83 -0.02 0.49 16 11 N -0.67 -9.86 6.12 -115.06 -0.70 -10.57 16 12 C 0.05 0.79 6.17 -4.97 -0.03 0.76 16 13 C 0.45 10.07 7.82 -10.99 -0.09 9.98 16 14 O -0.56 -15.13 15.78 5.55 0.09 -15.04 16 15 N -0.59 -13.90 5.09 -10.96 -0.06 -13.95 16 16 C -0.31 -8.64 10.16 -14.93 -0.15 -8.80 16 17 H 0.12 3.87 7.39 -52.49 -0.39 3.48 16 18 C 0.04 1.13 5.50 -17.47 -0.10 1.04 16 19 N -0.88 -25.65 13.96 55.50 0.77 -24.88 16 20 Si 0.88 19.14 27.74 -169.99 -4.71 14.43 16 21 H -0.27 -5.77 7.11 56.52 0.40 -5.37 16 22 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 23 H -0.27 -5.31 6.52 56.52 0.37 -4.94 16 24 C -0.06 -0.55 3.37 -104.63 -0.35 -0.90 16 25 C -0.08 -0.80 7.88 -39.58 -0.31 -1.11 16 26 C -0.12 -1.06 10.05 -39.58 -0.40 -1.46 16 27 C -0.12 -0.96 10.05 -39.58 -0.40 -1.35 16 28 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 29 C -0.11 -0.90 9.67 -39.58 -0.38 -1.28 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 32 H 0.05 0.24 8.14 -51.93 -0.42 -0.19 16 33 H 0.07 0.39 7.38 -51.93 -0.38 0.01 16 34 H 0.06 0.27 8.14 -51.93 -0.42 -0.16 16 35 H 0.07 0.30 7.43 -51.93 -0.39 -0.09 16 36 H 0.07 0.46 7.21 -51.93 -0.37 0.08 16 37 H 0.40 2.10 7.83 -40.82 -0.32 1.79 16 38 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.35 5.50 8.43 -39.29 -0.33 5.17 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 45 H 0.37 7.59 5.76 -40.82 -0.24 7.35 16 46 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 47 H 0.12 1.13 7.49 -52.49 -0.39 0.74 16 48 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 49 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 50 H 0.12 0.67 8.06 -52.48 -0.42 0.25 16 51 H 0.12 0.72 7.95 -52.48 -0.42 0.30 16 LS Contribution 420.64 15.07 6.34 6.34 Total: -1.00 -35.60 420.64 -9.67 -45.27 By element: Atomic # 1 Polarization: 20.77 SS G_CDS: -8.30 Total: 12.47 kcal Atomic # 6 Polarization: 2.80 SS G_CDS: -2.86 Total: -0.05 kcal Atomic # 7 Polarization: -55.48 SS G_CDS: -0.31 Total: -55.79 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.17 Total: -22.67 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -4.71 Total: 14.43 kcal Total LS contribution 6.34 Total: 6.34 kcal Total: -35.60 -9.67 -45.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150057630.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.579 kcal (2) G-P(sol) polarization free energy of solvation -35.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds