Wall clock time and date at job start Wed Apr 1 2020 05:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53001 * 109.46949 * 2 1 4 4 C 1.53001 * 109.46806 * 179.97438 * 3 2 1 5 5 H 1.08998 * 109.47077 * 304.99806 * 4 3 2 6 6 C 1.50703 * 109.46771 * 185.00254 * 4 3 2 7 7 O 1.21283 * 119.99488 * 239.99768 * 6 4 3 8 8 N 1.34777 * 120.00290 * 60.00208 * 6 4 3 9 9 C 1.46498 * 119.99828 * 180.27728 * 8 6 4 10 10 C 1.52996 * 109.47059 * 179.72339 * 9 8 6 11 11 N 1.46896 * 109.47256 * 180.02562 * 10 9 8 12 12 C 1.46903 * 111.00106 * 180.02562 * 11 10 9 13 13 C 1.50700 * 109.47212 * 179.97438 * 12 11 10 14 14 O 1.21292 * 119.99995 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00130 * 179.97438 * 13 12 11 16 16 C 1.37095 * 120.00317 * 179.97438 * 15 13 12 17 17 H 1.08001 * 120.00114 * 0.02562 * 16 15 13 18 18 C 1.38954 * 120.00461 * 180.02562 * 16 15 13 19 19 N 1.31410 * 120.00124 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 119.99769 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47036 * 90.00088 * 20 18 16 22 22 H 1.48491 * 109.47438 * 210.00285 * 20 18 16 23 23 H 1.48501 * 109.47130 * 330.00477 * 20 18 16 24 24 C 1.50701 * 109.47098 * 65.00199 * 4 3 2 25 25 C 1.38231 * 119.99979 * 59.72493 * 24 4 3 26 26 C 1.38236 * 119.99842 * 179.80856 * 25 24 4 27 27 C 1.38235 * 119.99770 * 0.40033 * 26 25 24 28 28 C 1.38234 * 120.00146 * 359.85534 * 27 26 25 29 29 C 1.38230 * 119.99535 * 239.99777 * 24 4 3 30 30 H 1.09004 * 109.46623 * 60.00178 * 1 2 3 31 31 H 1.09005 * 109.46800 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47358 * 300.00413 * 1 2 3 33 33 H 1.08996 * 109.47358 * 239.99587 * 2 1 3 34 34 H 1.09004 * 109.46623 * 119.99822 * 2 1 3 35 35 H 1.09002 * 109.47009 * 59.99635 * 3 2 1 36 36 H 1.08999 * 109.47116 * 299.99800 * 3 2 1 37 37 H 0.97001 * 119.99727 * 359.97438 * 8 6 4 38 38 H 1.09004 * 109.46963 * 299.72135 * 9 8 6 39 39 H 1.08994 * 109.47567 * 59.72287 * 9 8 6 40 40 H 1.09004 * 109.47066 * 299.99732 * 10 9 8 41 41 H 1.09000 * 109.47665 * 59.99541 * 10 9 8 42 42 H 1.00898 * 111.00589 * 56.04557 * 11 10 9 43 43 H 1.08999 * 109.46866 * 299.99546 * 12 11 10 44 44 H 1.09000 * 109.47494 * 59.99570 * 12 11 10 45 45 H 0.97000 * 120.00374 * 359.97438 * 15 13 12 46 46 H 0.97000 * 119.99592 * 179.97438 * 19 18 16 47 47 H 1.07998 * 119.99812 * 359.97438 * 25 24 4 48 48 H 1.07995 * 120.00000 * 180.23032 * 26 25 24 49 49 H 1.08000 * 119.99823 * 179.83567 * 27 26 25 50 50 H 1.08004 * 120.00231 * 179.97438 * 28 27 26 51 51 H 1.08006 * 120.00428 * 359.97438 * 29 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8532 0.8427 6 6 4.0723 2.8580 0.1245 7 8 4.7699 3.3322 -0.7468 8 7 3.7463 3.5967 1.2036 9 6 4.2295 4.9747 1.3211 10 6 3.7145 5.5863 2.6254 11 7 4.1985 6.9683 2.7430 12 6 3.7230 7.5887 3.9867 13 6 4.2390 9.0020 4.0723 14 8 4.9348 9.4484 3.1848 15 7 3.9272 9.7700 5.1351 16 6 4.3970 11.0556 5.2132 17 1 5.0166 11.4531 4.4229 18 6 4.0761 11.8473 6.3091 19 7 4.5260 13.0797 6.3837 20 14 3.0039 11.1601 7.6757 21 1 3.8627 10.5193 8.7039 22 1 2.2267 12.2623 8.2969 23 1 2.0700 10.1521 7.1127 24 6 4.0729 0.8419 -1.2868 25 6 3.7348 1.4183 -2.4968 26 6 4.1993 0.8697 -3.6775 27 6 4.9951 -0.2603 -3.6485 28 6 5.3289 -0.8398 -2.4387 29 6 4.8676 -0.2888 -1.2578 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8899 33 1 1.8934 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 1.6766 1.9564 0.8900 36 1 1.6767 1.9563 -0.8900 37 1 3.1880 3.2174 1.9004 38 1 5.3196 4.9785 1.3236 39 1 3.8661 5.5604 0.4768 40 1 2.6244 5.5826 2.6230 41 1 4.0778 5.0006 3.4699 42 1 3.9287 7.5156 1.9394 43 1 2.6331 7.5984 3.9943 44 1 4.0872 7.0170 4.8403 45 1 3.3705 9.4132 5.8447 46 1 4.3016 13.6324 7.1486 47 1 3.1099 2.2989 -2.5196 48 1 3.9383 1.3222 -4.6227 49 1 5.3559 -0.6905 -4.5711 50 1 5.9503 -1.7228 -2.4161 51 1 5.1285 -0.7415 -0.3126 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150057630.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:36 Heat of formation + Delta-G solvation = -84.590513 kcal Electronic energy + Delta-G solvation = -28989.894716 eV Core-core repulsion = 24887.379816 eV Total energy + Delta-G solvation = -4102.514900 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.43725 -40.31623 -39.65885 -37.49658 -36.64481 -36.03306 -35.18884 -33.74867 -33.05812 -31.75129 -30.92872 -29.45663 -27.71235 -25.92625 -25.15343 -23.64106 -23.25037 -22.71977 -21.98458 -21.29631 -20.81203 -20.28956 -18.24511 -17.93644 -17.60002 -17.27771 -17.01348 -16.74874 -16.54215 -16.16614 -15.83578 -15.59832 -15.52552 -15.26092 -14.99442 -14.87903 -14.59070 -14.38674 -14.27034 -14.14154 -13.94288 -13.89823 -13.47612 -13.39202 -13.23365 -12.96736 -12.70495 -12.58877 -12.41040 -12.40135 -12.29001 -12.02636 -11.96884 -11.86170 -11.71728 -11.51081 -11.43255 -10.81807 -10.45754 -10.24975 -10.12943 -9.75041 -9.58583 -9.37844 -8.40974 -6.02546 0.45622 0.56045 1.30830 1.37244 1.46116 1.61476 1.95723 2.04365 2.24173 2.80155 2.97069 3.15304 3.45060 3.54674 3.73704 3.88775 4.00823 4.07470 4.11228 4.17594 4.18485 4.23315 4.30525 4.31430 4.44830 4.45560 4.47787 4.60045 4.64268 4.68754 4.76223 4.85289 4.91470 4.95265 4.98320 5.03642 5.14820 5.18926 5.29211 5.37394 5.38729 5.50365 5.52700 5.59923 5.66264 5.71600 5.88073 6.01132 6.15222 6.30151 6.54847 6.59829 6.88240 7.25908 7.39716 7.97015 8.76780 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.020146 B = 0.001536 C = 0.001461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1389.535687 B =18227.026614 C =19166.438805 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.117 4.117 3 C -0.103 4.103 4 C -0.059 4.059 5 H 0.131 0.869 6 C 0.513 3.487 7 O -0.577 6.577 8 N -0.711 5.711 9 C 0.127 3.873 10 C 0.060 3.940 11 N -0.692 5.692 12 C 0.066 3.934 13 C 0.445 3.555 14 O -0.618 6.618 15 N -0.589 5.589 16 C -0.332 4.332 17 H 0.052 0.948 18 C -0.016 4.016 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.257 1.257 22 H -0.276 1.276 23 H -0.228 1.228 24 C -0.074 4.074 25 C -0.105 4.105 26 C -0.138 4.138 27 C -0.130 4.130 28 C -0.130 4.130 29 C -0.121 4.121 30 H 0.046 0.954 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.057 0.943 37 H 0.418 0.582 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.345 0.655 43 H 0.084 0.916 44 H 0.120 0.880 45 H 0.391 0.609 46 H 0.279 0.721 47 H 0.105 0.895 48 H 0.127 0.873 49 H 0.137 0.863 50 H 0.142 0.858 51 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.327 -36.906 -9.451 39.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.141 4.141 4 C -0.080 4.080 5 H 0.149 0.851 6 C 0.300 3.700 7 O -0.456 6.456 8 N -0.365 5.365 9 C 0.002 3.998 10 C -0.069 4.069 11 N -0.325 5.325 12 C -0.066 4.066 13 C 0.233 3.767 14 O -0.502 6.502 15 N -0.231 5.231 16 C -0.461 4.461 17 H 0.071 0.929 18 C -0.215 4.215 19 N -0.576 5.576 20 Si 0.788 3.212 21 H -0.181 1.181 22 H -0.201 1.201 23 H -0.151 1.151 24 C -0.074 4.074 25 C -0.123 4.123 26 C -0.156 4.156 27 C -0.148 4.148 28 C -0.148 4.148 29 C -0.139 4.139 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.109 0.891 36 H 0.075 0.925 37 H 0.256 0.744 38 H 0.072 0.928 39 H 0.070 0.930 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.164 0.836 43 H 0.101 0.899 44 H 0.138 0.862 45 H 0.227 0.773 46 H 0.089 0.911 47 H 0.123 0.877 48 H 0.145 0.855 49 H 0.155 0.845 50 H 0.160 0.840 51 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -9.747 -36.241 -10.281 38.912 hybrid contribution -1.121 0.921 0.457 1.521 sum -10.869 -35.320 -9.825 38.238 Atomic orbital electron populations 1.21773 0.95401 1.01985 1.01918 1.21476 0.96059 0.95295 1.02627 1.21647 0.90172 0.98917 1.03360 1.20414 0.98290 0.91456 0.97868 0.85129 1.21032 0.79470 0.88491 0.80995 1.90745 1.39369 1.73841 1.41668 1.45708 1.53788 1.13481 1.23496 1.21035 0.99135 0.82052 0.97579 1.22072 0.98680 0.88715 0.97405 1.59877 1.64923 1.03294 1.04391 1.21625 0.99404 0.90374 0.95221 1.21080 0.83895 0.89132 0.82609 1.90560 1.42602 1.75773 1.41275 1.42000 1.47834 1.12065 1.21182 1.19014 1.30836 0.88957 1.07314 0.92939 1.26170 0.99198 0.95366 1.00744 1.69815 1.46335 1.09244 1.32181 0.85324 0.78775 0.79328 0.77812 1.18132 1.20133 1.15075 1.19441 0.98370 0.95900 0.93686 1.20964 0.99833 0.98628 0.92873 1.21347 0.98849 0.97039 0.98373 1.21429 0.98197 0.96095 0.99076 1.21422 1.00193 1.00823 0.92329 1.21308 0.97260 0.95799 0.99500 0.93478 0.92352 0.91891 0.92755 0.90318 0.89100 0.92467 0.74413 0.92802 0.92966 0.92081 0.88447 0.83633 0.89855 0.86209 0.77309 0.91143 0.87678 0.85458 0.84476 0.83998 0.84079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 71.98 0.71 -0.41 16 2 C -0.12 -0.88 5.75 30.60 0.18 -0.71 16 3 C -0.10 -0.92 4.52 30.60 0.14 -0.78 16 4 C -0.06 -0.74 2.38 -12.28 -0.03 -0.77 16 5 H 0.13 0.95 7.88 -2.39 -0.02 0.93 16 6 C 0.51 10.02 7.03 87.66 0.62 10.63 16 7 O -0.58 -17.47 15.13 -3.04 -0.05 -17.52 16 8 N -0.71 -10.35 5.42 -463.07 -2.51 -12.86 16 9 C 0.13 2.56 5.93 86.38 0.51 3.08 16 10 C 0.06 1.03 5.80 86.30 0.50 1.53 16 11 N -0.69 -19.12 6.12 -517.94 -3.17 -22.29 16 12 C 0.07 1.85 6.17 85.56 0.53 2.37 16 13 C 0.44 19.74 7.82 87.66 0.69 20.42 16 14 O -0.62 -34.49 15.78 -3.07 -0.05 -34.54 16 15 N -0.59 -27.27 5.09 -306.99 -1.56 -28.84 16 16 C -0.33 -19.45 10.16 84.04 0.85 -18.60 16 17 H 0.05 3.69 7.39 -2.91 -0.02 3.67 16 18 C -0.02 -0.90 5.50 84.93 0.47 -0.43 16 19 N -0.94 -56.43 13.96 21.66 0.30 -56.12 16 20 Si 0.97 37.97 27.74 68.60 1.90 39.87 16 21 H -0.26 -9.55 7.11 99.48 0.71 -8.84 16 22 H -0.28 -10.81 7.11 99.48 0.71 -10.10 16 23 H -0.23 -7.32 6.52 99.48 0.65 -6.67 16 24 C -0.07 -1.24 3.37 -19.87 -0.07 -1.31 16 25 C -0.10 -2.09 7.88 22.27 0.18 -1.91 16 26 C -0.14 -2.50 10.05 22.27 0.22 -2.27 16 27 C -0.13 -2.00 10.05 22.27 0.22 -1.78 16 28 C -0.13 -1.83 10.05 22.27 0.22 -1.60 16 29 C -0.12 -1.75 9.67 22.27 0.22 -1.53 16 30 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.06 0.40 8.14 -2.38 -0.02 0.38 16 32 H 0.06 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.05 0.57 7.38 -2.39 -0.02 0.55 16 34 H 0.08 0.38 8.14 -2.38 -0.02 0.36 16 35 H 0.09 0.45 7.43 -2.39 -0.02 0.43 16 36 H 0.06 0.70 7.21 -2.39 -0.02 0.68 16 37 H 0.42 2.81 7.83 -92.71 -0.73 2.08 16 38 H 0.05 1.39 8.14 -2.38 -0.02 1.37 16 39 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.10 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.35 10.55 8.43 -89.70 -0.76 9.80 16 43 H 0.08 1.79 8.14 -2.39 -0.02 1.77 16 44 H 0.12 2.69 8.14 -2.39 -0.02 2.67 16 45 H 0.39 14.64 5.76 -92.71 -0.53 14.11 16 46 H 0.28 15.35 8.31 -92.71 -0.77 14.58 16 47 H 0.11 2.23 7.49 -2.91 -0.02 2.21 16 48 H 0.13 1.93 8.06 -2.91 -0.02 1.90 16 49 H 0.14 1.48 8.06 -2.91 -0.02 1.46 16 50 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 51 H 0.14 1.32 7.95 -2.91 -0.02 1.30 16 Total: -1.00 -86.34 420.64 -0.10 -86.45 By element: Atomic # 1 Polarization: 41.04 SS G_CDS: -1.13 Total: 39.91 kcal Atomic # 6 Polarization: -0.22 SS G_CDS: 6.16 Total: 5.94 kcal Atomic # 7 Polarization: -113.17 SS G_CDS: -6.94 Total: -120.11 kcal Atomic # 8 Polarization: -51.96 SS G_CDS: -0.09 Total: -52.06 kcal Atomic # 14 Polarization: 37.97 SS G_CDS: 1.90 Total: 39.87 kcal Total: -86.34 -0.10 -86.45 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150057630.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.857 kcal (2) G-P(sol) polarization free energy of solvation -86.345 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds