Wall clock time and date at job start Wed Apr 1 2020 05:18:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47231 * 2 1 4 4 C 1.53000 * 109.47171 * 174.66265 * 3 2 1 5 5 H 1.08999 * 109.46982 * 305.72402 * 4 3 2 6 6 C 1.50702 * 109.47152 * 65.72231 * 4 3 2 7 7 O 1.21286 * 119.99820 * 35.11887 * 6 4 3 8 8 N 1.34768 * 119.99921 * 215.12012 * 6 4 3 9 9 C 1.46507 * 120.00015 * 184.93543 * 8 6 4 10 10 C 1.52999 * 109.47067 * 179.97438 * 9 8 6 11 11 N 1.46898 * 109.46963 * 180.02562 * 10 9 8 12 12 C 1.46900 * 111.00070 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47140 * 179.97438 * 12 11 10 14 14 O 1.21296 * 120.00336 * 0.02562 * 13 12 11 15 15 N 1.34784 * 120.00001 * 179.97438 * 13 12 11 16 16 C 1.37094 * 119.99974 * 180.02562 * 15 13 12 17 17 H 1.08000 * 120.00444 * 0.02562 * 16 15 13 18 18 C 1.38952 * 119.99971 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99840 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99953 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47272 * 60.00365 * 20 18 16 22 22 H 1.48498 * 109.46917 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47073 * 300.00090 * 20 18 16 24 24 C 1.50701 * 109.46782 * 185.72332 * 4 3 2 25 25 C 1.38229 * 119.99954 * 120.00188 * 24 4 3 26 26 C 1.38232 * 119.99911 * 179.97438 * 25 24 4 27 27 C 1.38239 * 120.00133 * 359.97438 * 26 25 24 28 28 C 1.38228 * 119.99864 * 359.97438 * 27 26 25 29 29 C 1.38235 * 120.00003 * 0.07972 * 28 27 26 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47121 * 299.99978 * 1 2 3 32 32 H 1.09000 * 109.47148 * 59.99888 * 1 2 3 33 33 H 1.09005 * 109.47231 * 240.00389 * 2 1 3 34 34 H 1.09005 * 109.47486 * 119.99784 * 2 1 3 35 35 H 1.09003 * 109.46751 * 54.66157 * 3 2 1 36 36 H 1.08999 * 109.46925 * 294.66279 * 3 2 1 37 37 H 0.97003 * 120.00340 * 4.93605 * 8 6 4 38 38 H 1.08999 * 109.47040 * 300.00314 * 9 8 6 39 39 H 1.09004 * 109.46484 * 60.00017 * 9 8 6 40 40 H 1.08999 * 109.47735 * 300.00241 * 10 9 8 41 41 H 1.08999 * 109.46801 * 60.00517 * 10 9 8 42 42 H 1.00896 * 111.00133 * 56.04629 * 11 10 9 43 43 H 1.08999 * 109.47012 * 299.99838 * 12 11 10 44 44 H 1.09003 * 109.47361 * 60.00126 * 12 11 10 45 45 H 0.97002 * 119.99552 * 0.02562 * 15 13 12 46 46 H 0.96999 * 119.99898 * 180.02562 * 19 18 16 47 47 H 1.08000 * 120.00237 * 359.97438 * 25 24 4 48 48 H 1.08003 * 120.00290 * 179.97438 * 26 25 24 49 49 H 1.07997 * 120.00153 * 179.72609 * 27 26 25 50 50 H 1.08000 * 120.00416 * 179.97438 * 28 27 26 51 51 H 1.08007 * 120.00033 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5641 1.4446 0.1342 5 1 3.8520 0.8713 1.0153 6 6 4.1773 0.8213 -1.0932 7 8 3.6624 0.9864 -2.1789 8 7 5.2978 0.0803 -0.9845 9 6 5.9546 -0.4355 -2.1882 10 6 7.1950 -1.2371 -1.7885 11 7 7.8540 -1.7537 -2.9955 12 6 9.0516 -2.5310 -2.6497 13 6 9.6988 -3.0439 -3.9103 14 8 9.2107 -2.7870 -4.9906 15 7 10.8206 -3.7875 -3.8374 16 6 11.4096 -4.2537 -4.9842 17 1 10.9750 -4.0249 -5.9461 18 6 12.5665 -5.0198 -4.9091 19 7 13.0956 -5.2978 -3.7388 20 14 13.3694 -5.6545 -6.4717 21 1 13.7545 -4.5068 -7.3317 22 1 14.5803 -6.4398 -6.1221 23 1 12.4115 -6.5219 -7.2033 24 6 4.0540 2.8628 0.2755 25 6 4.7517 3.2436 1.4064 26 6 5.2014 4.5443 1.5357 27 6 4.9539 5.4641 0.5339 28 6 4.2571 5.0830 -0.5975 29 6 3.8064 3.7826 -0.7263 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 1.6007 1.9832 0.8384 36 1 1.7568 1.9280 -0.9339 37 1 5.6694 -0.1115 -0.1092 38 1 5.2638 -1.0808 -2.7308 39 1 6.2506 0.3976 -2.8258 40 1 7.8857 -0.5915 -1.2461 41 1 6.8993 -2.0701 -1.1508 42 1 8.0800 -1.0048 -3.6327 43 1 9.7551 -1.8947 -2.1127 44 1 8.7684 -3.3733 -2.0185 45 1 11.2111 -3.9926 -2.9735 46 1 13.9033 -5.8323 -3.6863 47 1 4.9454 2.5249 2.1889 48 1 5.7462 4.8420 2.4195 49 1 5.3015 6.4814 0.6369 50 1 4.0634 5.8017 -1.3800 51 1 3.2616 3.4849 -1.6102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150057631.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:40 Heat of formation + Delta-G solvation = -67.951456 kcal Electronic energy + Delta-G solvation = -29046.689595 eV Core-core repulsion = 24944.896218 eV Total energy + Delta-G solvation = -4101.793376 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.69825 -39.05868 -38.32381 -36.50423 -35.63072 -34.36888 -33.75280 -32.79398 -31.24888 -31.23455 -29.66784 -28.79018 -26.23767 -24.93787 -23.85912 -23.00789 -22.42443 -21.83962 -21.63957 -20.06267 -19.28084 -17.92673 -17.62859 -17.19997 -16.27480 -16.18068 -15.92988 -15.62648 -15.22991 -15.14095 -15.04688 -14.52835 -14.38143 -14.12029 -13.98461 -13.81125 -13.53169 -13.49575 -13.24105 -13.19692 -13.00481 -12.67910 -12.39028 -12.01613 -11.94851 -11.86605 -11.55682 -11.52749 -11.46731 -11.42612 -11.28623 -11.06038 -11.01523 -10.93383 -10.44549 -10.22266 -10.07906 -9.50998 -9.26009 -9.23914 -9.03872 -8.51222 -8.13786 -7.97433 -6.42613 -3.83451 0.93962 1.06539 2.43917 2.87762 3.20050 3.25689 3.30420 3.43640 3.89048 4.11019 4.19846 4.30816 4.41038 4.49510 4.62809 4.68842 4.74445 4.79460 4.85357 4.89682 4.95161 4.99265 5.16290 5.17104 5.22850 5.25092 5.26672 5.38055 5.42229 5.48810 5.59167 5.63662 5.71242 5.71836 5.80830 5.82775 5.90063 5.93696 5.94707 6.00959 6.10931 6.18886 6.19570 6.23059 6.26526 6.64094 7.08863 7.27615 7.54419 7.56001 8.01545 8.04926 8.60017 9.16812 9.52719 10.04203 10.75014 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.001615 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.937104 B =17336.795345 C =18399.457612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.128 4.128 3 C -0.100 4.100 4 C -0.065 4.065 5 H 0.095 0.905 6 C 0.524 3.476 7 O -0.531 6.531 8 N -0.727 5.727 9 C 0.120 3.880 10 C 0.050 3.950 11 N -0.665 5.665 12 C 0.053 3.947 13 C 0.440 3.560 14 O -0.582 6.582 15 N -0.563 5.563 16 C -0.300 4.300 17 H 0.103 0.897 18 C 0.022 3.978 19 N -0.902 5.902 20 Si 0.932 3.068 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.079 4.079 25 C -0.112 4.112 26 C -0.121 4.121 27 C -0.119 4.119 28 C -0.119 4.119 29 C -0.103 4.103 30 H 0.054 0.946 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.060 0.940 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.399 0.601 38 H 0.081 0.919 39 H 0.067 0.933 40 H 0.032 0.968 41 H 0.077 0.923 42 H 0.352 0.648 43 H 0.045 0.955 44 H 0.087 0.913 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.123 0.877 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.123 0.877 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.463 17.648 17.425 31.526 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.166 4.166 3 C -0.138 4.138 4 C -0.087 4.087 5 H 0.113 0.887 6 C 0.309 3.691 7 O -0.407 6.407 8 N -0.379 5.379 9 C -0.004 4.004 10 C -0.080 4.080 11 N -0.299 5.299 12 C -0.080 4.080 13 C 0.225 3.775 14 O -0.466 6.466 15 N -0.199 5.199 16 C -0.430 4.430 17 H 0.121 0.879 18 C -0.179 4.179 19 N -0.543 5.543 20 Si 0.759 3.241 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.199 1.199 24 C -0.079 4.079 25 C -0.130 4.130 26 C -0.139 4.139 27 C -0.137 4.137 28 C -0.137 4.137 29 C -0.121 4.121 30 H 0.073 0.927 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.079 0.921 35 H 0.090 0.910 36 H 0.097 0.903 37 H 0.233 0.767 38 H 0.099 0.901 39 H 0.085 0.915 40 H 0.050 0.950 41 H 0.095 0.905 42 H 0.172 0.828 43 H 0.063 0.937 44 H 0.105 0.895 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.141 0.859 48 H 0.141 0.859 49 H 0.139 0.861 50 H 0.141 0.859 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -20.367 17.266 15.875 31.064 hybrid contribution 1.706 0.085 0.591 1.808 sum -18.661 17.351 16.466 30.338 Atomic orbital electron populations 1.21727 0.95491 1.01722 1.01776 1.21586 0.96386 0.96374 1.02249 1.21556 0.91014 0.97776 1.03449 1.20347 0.97484 0.93561 0.97267 0.88683 1.20366 0.80067 0.78050 0.90610 1.90711 1.61283 1.60068 1.28662 1.45955 1.27618 1.54057 1.10262 1.21286 0.94296 0.97994 0.86798 1.22076 0.94633 0.97939 0.93392 1.59926 1.27642 1.29140 1.13156 1.21667 0.90893 0.98194 0.97257 1.19777 0.83300 0.84441 0.89998 1.90535 1.64703 1.61853 1.29525 1.41848 1.22630 1.45714 1.09756 1.19665 1.06668 1.28931 0.87697 0.87933 1.25269 0.96973 0.97338 0.98368 1.69604 1.21997 1.39142 1.23598 0.85903 0.78284 0.78894 0.81059 1.19906 1.20978 1.19857 1.19412 0.99369 0.93843 0.95301 1.21049 0.98078 0.96577 0.97251 1.21130 1.00161 0.93450 0.99161 1.21209 0.98737 0.99654 0.94124 1.21190 0.98292 0.96239 0.97965 1.21189 0.99157 0.93055 0.98706 0.92681 0.92830 0.92587 0.91530 0.92100 0.90973 0.90253 0.76715 0.90099 0.91488 0.94971 0.90471 0.82816 0.93730 0.89466 0.77452 0.91815 0.85898 0.85928 0.86070 0.85923 0.85310 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.02 9.91 37.16 0.37 -0.65 16 2 C -0.13 -0.97 5.67 -26.73 -0.15 -1.12 16 3 C -0.10 -0.76 4.18 -26.73 -0.11 -0.88 16 4 C -0.07 -0.50 2.37 -92.92 -0.22 -0.72 16 5 H 0.09 0.51 7.82 -51.93 -0.41 0.11 16 6 C 0.52 5.55 5.63 -10.99 -0.06 5.49 16 7 O -0.53 -7.62 15.48 5.55 0.09 -7.54 16 8 N -0.73 -6.76 5.55 -60.29 -0.33 -7.10 16 9 C 0.12 1.38 5.94 -4.04 -0.02 1.36 16 10 C 0.05 0.57 5.80 -3.83 -0.02 0.55 16 11 N -0.67 -10.59 6.12 -115.06 -0.70 -11.29 16 12 C 0.05 0.91 6.17 -4.98 -0.03 0.88 16 13 C 0.44 10.38 7.82 -10.98 -0.09 10.30 16 14 O -0.58 -15.94 15.78 5.54 0.09 -15.85 16 15 N -0.56 -14.25 5.29 -10.96 -0.06 -14.31 16 16 C -0.30 -8.40 9.68 -14.93 -0.14 -8.54 16 17 H 0.10 3.01 7.16 -52.49 -0.38 2.63 16 18 C 0.02 0.59 5.50 -17.47 -0.10 0.50 16 19 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 20 Si 0.93 21.10 29.55 -169.99 -5.02 16.08 16 21 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 22 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 C -0.08 -0.65 4.77 -104.63 -0.50 -1.15 16 25 C -0.11 -0.79 9.67 -39.59 -0.38 -1.17 16 26 C -0.12 -0.84 10.05 -39.58 -0.40 -1.24 16 27 C -0.12 -0.87 10.05 -39.58 -0.40 -1.27 16 28 C -0.12 -0.97 10.05 -39.59 -0.40 -1.37 16 29 C -0.10 -0.95 8.86 -39.58 -0.35 -1.30 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.07 0.64 7.45 -51.93 -0.39 0.26 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.73 7.11 -51.93 -0.37 0.36 16 37 H 0.40 2.57 8.44 -40.82 -0.34 2.23 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.35 5.84 8.43 -39.29 -0.33 5.51 16 43 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 44 H 0.09 1.38 8.14 -51.93 -0.42 0.95 16 45 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 46 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 47 H 0.12 0.60 7.95 -52.49 -0.42 0.18 16 48 H 0.12 0.60 8.06 -52.48 -0.42 0.18 16 49 H 0.12 0.65 8.06 -52.49 -0.42 0.22 16 50 H 0.12 0.81 8.06 -52.49 -0.42 0.38 16 51 H 0.13 1.30 7.16 -52.48 -0.38 0.92 16 LS Contribution 425.70 15.07 6.42 6.42 Total: -1.00 -33.72 425.70 -10.20 -43.92 By element: Atomic # 1 Polarization: 22.15 SS G_CDS: -8.38 Total: 13.76 kcal Atomic # 6 Polarization: 2.67 SS G_CDS: -3.01 Total: -0.34 kcal Atomic # 7 Polarization: -56.07 SS G_CDS: -0.37 Total: -56.45 kcal Atomic # 8 Polarization: -23.56 SS G_CDS: 0.17 Total: -23.39 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -33.72 -10.20 -43.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150057631.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.032 kcal (2) G-P(sol) polarization free energy of solvation -33.723 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.197 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds