Wall clock time and date at job start Wed Apr 1 2020 05:18:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53009 * 109.47231 * 2 1 4 4 C 1.53000 * 109.47171 * 174.66265 * 3 2 1 5 5 H 1.08999 * 109.46982 * 305.72402 * 4 3 2 6 6 C 1.50702 * 109.47152 * 65.72231 * 4 3 2 7 7 O 1.21286 * 119.99820 * 35.11887 * 6 4 3 8 8 N 1.34768 * 119.99921 * 215.12012 * 6 4 3 9 9 C 1.46507 * 120.00015 * 184.93543 * 8 6 4 10 10 C 1.52999 * 109.47067 * 179.97438 * 9 8 6 11 11 N 1.46898 * 109.46963 * 180.02562 * 10 9 8 12 12 C 1.46900 * 111.00070 * 180.02562 * 11 10 9 13 13 C 1.50697 * 109.47140 * 179.97438 * 12 11 10 14 14 O 1.21296 * 120.00336 * 0.02562 * 13 12 11 15 15 N 1.34784 * 120.00001 * 179.97438 * 13 12 11 16 16 C 1.37094 * 119.99974 * 180.02562 * 15 13 12 17 17 H 1.08000 * 120.00444 * 0.02562 * 16 15 13 18 18 C 1.38952 * 119.99971 * 179.97438 * 16 15 13 19 19 N 1.31413 * 119.99840 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 119.99953 * 180.02562 * 18 16 15 21 21 H 1.48498 * 109.47272 * 60.00365 * 20 18 16 22 22 H 1.48498 * 109.46917 * 180.02562 * 20 18 16 23 23 H 1.48504 * 109.47073 * 300.00090 * 20 18 16 24 24 C 1.50701 * 109.46782 * 185.72332 * 4 3 2 25 25 C 1.38229 * 119.99954 * 120.00188 * 24 4 3 26 26 C 1.38232 * 119.99911 * 179.97438 * 25 24 4 27 27 C 1.38239 * 120.00133 * 359.97438 * 26 25 24 28 28 C 1.38228 * 119.99864 * 359.97438 * 27 26 25 29 29 C 1.38235 * 120.00003 * 0.07972 * 28 27 26 30 30 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47121 * 299.99978 * 1 2 3 32 32 H 1.09000 * 109.47148 * 59.99888 * 1 2 3 33 33 H 1.09005 * 109.47231 * 240.00389 * 2 1 3 34 34 H 1.09005 * 109.47486 * 119.99784 * 2 1 3 35 35 H 1.09003 * 109.46751 * 54.66157 * 3 2 1 36 36 H 1.08999 * 109.46925 * 294.66279 * 3 2 1 37 37 H 0.97003 * 120.00340 * 4.93605 * 8 6 4 38 38 H 1.08999 * 109.47040 * 300.00314 * 9 8 6 39 39 H 1.09004 * 109.46484 * 60.00017 * 9 8 6 40 40 H 1.08999 * 109.47735 * 300.00241 * 10 9 8 41 41 H 1.08999 * 109.46801 * 60.00517 * 10 9 8 42 42 H 1.00896 * 111.00133 * 56.04629 * 11 10 9 43 43 H 1.08999 * 109.47012 * 299.99838 * 12 11 10 44 44 H 1.09003 * 109.47361 * 60.00126 * 12 11 10 45 45 H 0.97002 * 119.99552 * 0.02562 * 15 13 12 46 46 H 0.96999 * 119.99898 * 180.02562 * 19 18 16 47 47 H 1.08000 * 120.00237 * 359.97438 * 25 24 4 48 48 H 1.08003 * 120.00290 * 179.97438 * 26 25 24 49 49 H 1.07997 * 120.00153 * 179.72609 * 27 26 25 50 50 H 1.08000 * 120.00416 * 179.97438 * 28 27 26 51 51 H 1.08007 * 120.00033 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5641 1.4446 0.1342 5 1 3.8520 0.8713 1.0153 6 6 4.1773 0.8213 -1.0932 7 8 3.6624 0.9864 -2.1789 8 7 5.2978 0.0803 -0.9845 9 6 5.9546 -0.4355 -2.1882 10 6 7.1950 -1.2371 -1.7885 11 7 7.8540 -1.7537 -2.9955 12 6 9.0516 -2.5310 -2.6497 13 6 9.6988 -3.0439 -3.9103 14 8 9.2107 -2.7870 -4.9906 15 7 10.8206 -3.7875 -3.8374 16 6 11.4096 -4.2537 -4.9842 17 1 10.9750 -4.0249 -5.9461 18 6 12.5665 -5.0198 -4.9091 19 7 13.0956 -5.2978 -3.7388 20 14 13.3694 -5.6545 -6.4717 21 1 13.7545 -4.5068 -7.3317 22 1 14.5803 -6.4398 -6.1221 23 1 12.4115 -6.5219 -7.2033 24 6 4.0540 2.8628 0.2755 25 6 4.7517 3.2436 1.4064 26 6 5.2014 4.5443 1.5357 27 6 4.9539 5.4641 0.5339 28 6 4.2571 5.0830 -0.5975 29 6 3.8064 3.7826 -0.7263 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 1.8934 -0.5138 0.8900 35 1 1.6007 1.9832 0.8384 36 1 1.7568 1.9280 -0.9339 37 1 5.6694 -0.1115 -0.1092 38 1 5.2638 -1.0808 -2.7308 39 1 6.2506 0.3976 -2.8258 40 1 7.8857 -0.5915 -1.2461 41 1 6.8993 -2.0701 -1.1508 42 1 8.0800 -1.0048 -3.6327 43 1 9.7551 -1.8947 -2.1127 44 1 8.7684 -3.3733 -2.0185 45 1 11.2111 -3.9926 -2.9735 46 1 13.9033 -5.8323 -3.6863 47 1 4.9454 2.5249 2.1889 48 1 5.7462 4.8420 2.4195 49 1 5.3015 6.4814 0.6369 50 1 4.0634 5.8017 -1.3800 51 1 3.2616 3.4849 -1.6102 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150057631.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:39 Heat of formation + Delta-G solvation = -91.603003 kcal Electronic energy + Delta-G solvation = -29047.715203 eV Core-core repulsion = 24944.896218 eV Total energy + Delta-G solvation = -4102.818984 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.44298 -40.18072 -39.70364 -37.58540 -36.39100 -35.98178 -35.21138 -33.40809 -33.26281 -31.78856 -30.72233 -29.49863 -27.74665 -26.02536 -25.15540 -23.56838 -23.33949 -22.66462 -22.22330 -21.10677 -20.81406 -19.92426 -18.44229 -17.81869 -17.70812 -17.27774 -17.03507 -16.57620 -16.39476 -16.02980 -15.96722 -15.72774 -15.69638 -15.35010 -15.04574 -14.86552 -14.45345 -14.36997 -14.23755 -14.10486 -13.82175 -13.58477 -13.51553 -13.35379 -13.22080 -12.93534 -12.63362 -12.60935 -12.44588 -12.43958 -12.40104 -12.12562 -12.11511 -11.85516 -11.65635 -11.55397 -11.51200 -10.91544 -10.37637 -10.13992 -10.02370 -9.82358 -9.63598 -9.39846 -8.47239 -5.95916 0.36350 0.49748 1.39554 1.41709 1.52445 1.61919 2.02936 2.04938 2.30351 2.84940 3.03091 3.19978 3.53233 3.61150 3.74185 3.83889 3.91194 4.08016 4.11921 4.15392 4.20083 4.23468 4.31050 4.33122 4.41118 4.44709 4.49629 4.60280 4.62792 4.65487 4.70034 4.85041 4.89063 4.91089 4.94189 5.02140 5.10161 5.16164 5.23626 5.34599 5.35907 5.40443 5.44155 5.56692 5.63369 5.65209 5.83654 6.06255 6.10006 6.29897 6.53619 6.59654 7.12024 7.23895 7.55382 8.11164 8.69767 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.014804 B = 0.001615 C = 0.001521 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1890.937104 B =17336.795345 C =18399.457612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.126 4.126 3 C -0.096 4.096 4 C -0.056 4.056 5 H 0.129 0.871 6 C 0.520 3.480 7 O -0.577 6.577 8 N -0.714 5.714 9 C 0.129 3.871 10 C 0.060 3.940 11 N -0.687 5.687 12 C 0.068 3.932 13 C 0.434 3.566 14 O -0.626 6.626 15 N -0.571 5.571 16 C -0.336 4.336 17 H 0.077 0.923 18 C -0.012 4.012 19 N -0.918 5.918 20 Si 0.992 3.008 21 H -0.272 1.272 22 H -0.269 1.269 23 H -0.273 1.273 24 C -0.088 4.088 25 C -0.110 4.110 26 C -0.125 4.125 27 C -0.125 4.125 28 C -0.134 4.134 29 C -0.125 4.125 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.044 0.956 33 H 0.039 0.961 34 H 0.080 0.920 35 H 0.089 0.911 36 H 0.053 0.947 37 H 0.417 0.583 38 H 0.057 0.943 39 H 0.051 0.949 40 H 0.056 0.944 41 H 0.095 0.905 42 H 0.345 0.655 43 H 0.073 0.927 44 H 0.110 0.890 45 H 0.398 0.602 46 H 0.278 0.722 47 H 0.152 0.848 48 H 0.147 0.853 49 H 0.139 0.861 50 H 0.128 0.872 51 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.715 17.753 20.635 33.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.163 4.163 3 C -0.134 4.134 4 C -0.077 4.077 5 H 0.147 0.853 6 C 0.307 3.693 7 O -0.456 6.456 8 N -0.367 5.367 9 C 0.004 3.996 10 C -0.069 4.069 11 N -0.319 5.319 12 C -0.064 4.064 13 C 0.222 3.778 14 O -0.513 6.513 15 N -0.209 5.209 16 C -0.466 4.466 17 H 0.095 0.905 18 C -0.212 4.212 19 N -0.559 5.559 20 Si 0.816 3.184 21 H -0.198 1.198 22 H -0.193 1.193 23 H -0.198 1.198 24 C -0.088 4.088 25 C -0.128 4.128 26 C -0.142 4.142 27 C -0.143 4.143 28 C -0.152 4.152 29 C -0.143 4.143 30 H 0.076 0.924 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.057 0.943 34 H 0.099 0.901 35 H 0.107 0.893 36 H 0.072 0.928 37 H 0.254 0.746 38 H 0.075 0.925 39 H 0.069 0.931 40 H 0.074 0.926 41 H 0.113 0.887 42 H 0.163 0.837 43 H 0.091 0.909 44 H 0.128 0.872 45 H 0.232 0.768 46 H 0.088 0.912 47 H 0.170 0.830 48 H 0.165 0.835 49 H 0.157 0.843 50 H 0.146 0.854 51 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -19.608 17.366 19.156 32.450 hybrid contribution 1.424 0.117 -0.395 1.482 sum -18.185 17.483 18.761 31.438 Atomic orbital electron populations 1.21731 0.95024 1.01982 1.01971 1.21564 0.96860 0.96147 1.01771 1.21513 0.91322 0.97757 1.02822 1.20364 0.97040 0.93599 0.96742 0.85304 1.20977 0.79849 0.77483 0.91008 1.90695 1.62599 1.61586 1.30723 1.45802 1.27112 1.53334 1.10428 1.21016 0.94086 0.97053 0.87442 1.22065 0.94221 0.98806 0.91850 1.59897 1.27237 1.29542 1.15269 1.21525 0.91572 0.99474 0.93802 1.20941 0.82323 0.82839 0.91714 1.90504 1.65658 1.63033 1.32067 1.41909 1.23356 1.46341 1.09259 1.19624 1.08081 1.31006 0.87859 0.90457 1.26028 0.96830 0.96840 1.01502 1.69657 1.22250 1.39067 1.24927 0.84998 0.77636 0.78316 0.77444 1.19754 1.19344 1.19847 1.19489 1.00001 0.93654 0.95670 1.21373 0.96923 0.97318 0.97158 1.21502 0.99727 0.93316 0.99684 1.21500 0.98212 1.00849 0.93759 1.21361 0.98833 0.96061 0.98914 1.21180 1.00214 0.94158 0.98782 0.92394 0.91356 0.93684 0.94257 0.90149 0.89283 0.92799 0.74580 0.92505 0.93100 0.92570 0.88689 0.83667 0.90926 0.87219 0.76820 0.91240 0.83028 0.83514 0.84269 0.85404 0.87527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 71.98 0.71 -1.24 16 2 C -0.13 -1.82 5.67 30.60 0.17 -1.65 16 3 C -0.10 -1.42 4.18 30.60 0.13 -1.29 16 4 C -0.06 -0.79 2.37 -12.28 -0.03 -0.81 16 5 H 0.13 0.90 7.82 -2.39 -0.02 0.88 16 6 C 0.52 10.95 5.63 87.66 0.49 11.44 16 7 O -0.58 -17.61 15.48 -3.05 -0.05 -17.66 16 8 N -0.71 -12.31 5.55 -463.05 -2.57 -14.88 16 9 C 0.13 2.92 5.94 86.38 0.51 3.44 16 10 C 0.06 1.23 5.80 86.30 0.50 1.73 16 11 N -0.69 -21.11 6.12 -517.94 -3.17 -24.28 16 12 C 0.07 2.24 6.17 85.56 0.53 2.76 16 13 C 0.43 20.60 7.82 87.65 0.69 21.29 16 14 O -0.63 -35.20 15.78 -3.08 -0.05 -35.25 16 15 N -0.57 -29.15 5.29 -306.98 -1.62 -30.78 16 16 C -0.34 -19.16 9.68 84.04 0.81 -18.34 16 17 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 18 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 19 N -0.92 -49.16 13.05 21.66 0.28 -48.87 16 20 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 21 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 22 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 23 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 24 C -0.09 -1.34 4.77 -19.87 -0.09 -1.43 16 25 C -0.11 -1.22 9.67 22.27 0.22 -1.00 16 26 C -0.12 -1.37 10.05 22.27 0.22 -1.14 16 27 C -0.13 -1.63 10.05 22.27 0.22 -1.40 16 28 C -0.13 -2.19 10.05 22.27 0.22 -1.97 16 29 C -0.13 -2.39 8.86 22.27 0.20 -2.19 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.04 0.78 7.45 -2.38 -0.02 0.77 16 34 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 35 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 36 H 0.05 1.08 7.11 -2.39 -0.02 1.06 16 37 H 0.42 4.09 8.44 -92.71 -0.78 3.30 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 40 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 42 H 0.34 11.44 8.43 -89.70 -0.76 10.68 16 43 H 0.07 2.00 8.14 -2.39 -0.02 1.99 16 44 H 0.11 3.13 8.14 -2.39 -0.02 3.12 16 45 H 0.40 19.02 7.90 -92.71 -0.73 18.29 16 46 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 47 H 0.15 0.76 7.95 -2.91 -0.02 0.73 16 48 H 0.15 0.87 8.06 -2.91 -0.02 0.85 16 49 H 0.14 1.21 8.06 -2.91 -0.02 1.19 16 50 H 0.13 1.78 8.06 -2.91 -0.02 1.76 16 51 H 0.11 2.43 7.16 -2.91 -0.02 2.41 16 Total: -1.00 -76.29 425.70 -0.50 -76.79 By element: Atomic # 1 Polarization: 43.22 SS G_CDS: -1.32 Total: 41.90 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: 5.98 Total: 8.00 kcal Atomic # 7 Polarization: -111.73 SS G_CDS: -7.08 Total: -118.81 kcal Atomic # 8 Polarization: -52.81 SS G_CDS: -0.10 Total: -52.90 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Total: -76.29 -0.50 -76.79 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150057631.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.817 kcal (2) G-P(sol) polarization free energy of solvation -76.286 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds