Wall clock time and date at job start Wed Apr 1 2020 04:36:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47739 * 37.90022 * 3 2 1 5 5 C 1.52992 * 109.47500 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47248 * 180.02562 * 5 4 3 7 7 O 1.21282 * 119.99747 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00277 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99897 * 180.02562 * 8 6 5 10 10 H 1.09001 * 112.88947 * 26.83236 * 9 8 6 11 11 C 1.53946 * 113.65918 * 255.48634 * 9 8 6 12 12 C 1.53949 * 87.29722 * 270.17153 * 11 9 8 13 13 H 1.08995 * 113.66128 * 89.83109 * 12 11 9 14 14 N 1.46906 * 113.66240 * 220.79689 * 12 11 9 15 15 C 1.46902 * 110.99573 * 255.49442 * 14 12 11 16 16 C 1.50707 * 109.46656 * 179.97438 * 15 14 12 17 17 O 1.21294 * 120.00016 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99715 * 179.97438 * 16 15 14 19 19 C 1.37092 * 119.99635 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00232 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99714 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00244 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99808 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46862 * 90.00107 * 23 21 19 25 25 H 1.48500 * 109.46905 * 209.99678 * 23 21 19 26 26 H 1.48499 * 109.47390 * 329.99751 * 23 21 19 27 27 C 1.52907 * 86.78080 * 335.26548 * 12 11 9 28 28 C 1.52907 * 121.13646 * 259.17811 * 27 12 11 29 29 C 1.53951 * 86.78321 * 209.38297 * 28 27 12 30 30 C 1.52909 * 121.13395 * 150.61805 * 27 12 11 31 31 H 4.44655 * 5.63271 * 180.02562 * 4 1 2 32 32 H 1.09005 * 109.47429 * 277.89558 * 3 2 1 33 33 H 1.09006 * 109.47092 * 157.90143 * 3 2 1 34 34 H 1.09005 * 109.47039 * 59.99298 * 4 3 2 35 35 H 1.09006 * 109.46928 * 300.00222 * 4 3 2 36 36 H 1.08997 * 109.47173 * 60.00059 * 5 4 3 37 37 H 1.09002 * 109.47187 * 299.99723 * 5 4 3 38 38 H 0.96992 * 119.99589 * 359.97438 * 8 6 5 39 39 H 1.09003 * 113.57890 * 155.56855 * 11 9 8 40 40 H 1.08999 * 113.65193 * 24.78902 * 11 9 8 41 41 H 1.00896 * 111.00309 * 131.53854 * 14 12 11 42 42 H 1.08990 * 109.47358 * 299.99539 * 15 14 12 43 43 H 1.09004 * 109.47457 * 60.00221 * 15 14 12 44 44 H 0.96993 * 119.99587 * 0.02562 * 18 16 15 45 45 H 0.96997 * 119.99955 * 180.02562 * 22 21 19 46 46 H 1.08997 * 113.66620 * 323.85296 * 28 27 12 47 47 H 1.09004 * 113.66197 * 94.91771 * 28 27 12 48 48 H 1.09004 * 113.58235 * 270.13651 * 29 28 27 49 49 H 1.08997 * 113.65077 * 139.34678 * 29 28 27 50 50 H 1.09000 * 113.66162 * 265.08903 * 30 27 12 51 51 H 1.08999 * 113.66477 * 36.14627 * 30 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.1373 -0.8861 5 6 4.6866 -1.1362 -0.8866 6 6 5.1895 -2.2567 -1.7598 7 8 4.4017 -2.9848 -2.3257 8 7 6.5147 -2.4504 -1.9112 9 6 7.0035 -3.5393 -2.7606 10 1 6.3002 -3.8116 -3.5476 11 6 7.5430 -4.7450 -1.9699 12 6 8.9199 -4.0571 -2.0019 13 1 9.0969 -3.3931 -1.1559 14 7 10.0353 -4.9816 -2.2457 15 6 10.7825 -5.2428 -1.0082 16 6 11.9158 -6.1934 -1.2969 17 8 12.0846 -6.6116 -2.4229 18 7 12.7423 -6.5779 -0.3041 19 6 13.7735 -7.4422 -0.5669 20 1 13.9234 -7.8153 -1.5693 21 6 14.6253 -7.8391 0.4567 22 7 14.4427 -7.3856 1.6765 23 14 16.0300 -9.0173 0.0988 24 1 17.2418 -8.2440 -0.2739 25 1 16.3143 -9.8305 1.3083 26 1 15.6506 -9.9139 -1.0226 27 6 8.4344 -3.3360 -3.2598 28 6 8.8598 -3.8024 -4.6524 29 6 8.7135 -2.3348 -5.0938 30 6 8.9546 -1.9450 -3.6241 31 1 -1.0498 -0.0001 -0.0004 32 1 3.0094 -0.1404 1.0179 33 1 3.0089 0.9530 -0.3866 34 1 2.7932 -0.9963 -1.9040 35 1 2.7937 -2.0897 -0.4995 36 1 5.0503 -1.2770 0.1312 37 1 5.0491 -0.1838 -1.2735 38 1 7.1446 -1.8683 -1.4583 39 1 7.5104 -5.6815 -2.5268 40 1 7.1232 -4.8341 -0.9680 41 1 10.6449 -4.6301 -2.9688 42 1 11.1833 -4.3061 -0.6211 43 1 10.1163 -5.6864 -0.2682 44 1 12.6075 -6.2431 0.5961 45 1 15.0375 -7.6624 2.3909 46 1 9.8842 -4.1723 -4.6961 47 1 8.1445 -4.4750 -5.1260 48 1 7.7151 -2.0849 -5.4530 49 1 9.5015 -2.0005 -5.7685 50 1 8.3151 -1.1338 -3.2761 51 1 10.0056 -1.7928 -3.3786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202833148.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:44 Heat of formation + Delta-G solvation = 13.103790 kcal Electronic energy + Delta-G solvation = -29572.575640 eV Core-core repulsion = 25474.297083 eV Total energy + Delta-G solvation = -4098.278557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.27414 -39.48468 -38.15833 -36.05479 -35.56441 -34.60744 -33.81168 -32.78842 -31.97049 -31.18733 -28.44603 -26.88754 -25.99355 -24.76860 -24.50024 -23.39132 -22.33389 -21.04119 -20.37379 -19.30074 -18.71009 -18.23347 -17.89419 -17.16492 -16.67401 -16.30068 -16.11277 -15.57968 -15.14975 -15.08200 -14.79804 -14.55501 -14.47175 -14.28070 -13.90921 -13.72693 -13.39785 -13.11802 -13.01778 -12.82166 -12.52330 -12.37575 -12.03750 -12.01038 -11.91012 -11.86723 -11.58156 -11.41721 -11.39170 -11.18043 -11.02583 -10.60932 -10.54986 -10.46772 -10.39887 -10.25332 -10.20699 -10.06383 -10.00803 -9.51379 -9.19368 -8.44164 -8.06515 -7.96184 -6.42303 -3.83047 2.37735 2.41809 2.48541 2.84912 3.17305 3.26078 3.32228 3.90548 3.96931 4.06877 4.15840 4.24980 4.33148 4.42783 4.55854 4.58074 4.63615 4.67411 4.73808 4.83145 4.99905 5.04230 5.14639 5.16170 5.18652 5.24693 5.28304 5.34171 5.48588 5.54606 5.65320 5.66850 5.69814 5.73829 5.74882 5.80901 5.85243 5.89532 5.94756 5.98734 6.07538 6.23248 6.25829 6.32497 6.44012 7.23784 7.26476 7.28348 7.54661 7.66504 7.97773 8.05954 8.60840 9.17458 9.53940 10.05405 10.75436 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.001742 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.897925 B =16065.449063 C =17319.964707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.187 4.187 3 C -0.014 4.014 4 C -0.100 4.100 5 C -0.142 4.142 6 C 0.514 3.486 7 O -0.538 6.538 8 N -0.711 5.711 9 C 0.145 3.855 10 H 0.103 0.897 11 C -0.133 4.133 12 C 0.073 3.927 13 H 0.068 0.932 14 N -0.651 5.651 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.269 1.269 27 C -0.111 4.111 28 C -0.102 4.102 29 C -0.141 4.141 30 C -0.130 4.130 31 H 0.216 0.784 32 H 0.088 0.912 33 H 0.087 0.913 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.400 0.600 39 H 0.100 0.900 40 H 0.066 0.934 41 H 0.349 0.651 42 H 0.041 0.959 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.095 0.905 47 H 0.072 0.928 48 H 0.077 0.923 49 H 0.068 0.932 50 H 0.066 0.934 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.804 18.640 -3.387 27.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.187 4.187 3 C -0.050 4.050 4 C -0.138 4.138 5 C -0.182 4.182 6 C 0.301 3.699 7 O -0.414 6.414 8 N -0.362 5.362 9 C 0.039 3.961 10 H 0.121 0.879 11 C -0.172 4.172 12 C -0.038 4.038 13 H 0.086 0.914 14 N -0.284 5.284 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.179 4.179 22 N -0.543 5.543 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.209 1.209 26 H -0.194 1.194 27 C -0.112 4.112 28 C -0.140 4.140 29 C -0.178 4.178 30 C -0.167 4.167 31 H 0.233 0.767 32 H 0.106 0.894 33 H 0.105 0.895 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.115 0.885 37 H 0.114 0.886 38 H 0.235 0.765 39 H 0.118 0.882 40 H 0.085 0.915 41 H 0.170 0.830 42 H 0.059 0.941 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.114 0.886 47 H 0.091 0.909 48 H 0.095 0.905 49 H 0.086 0.914 50 H 0.085 0.915 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.516 17.213 -4.324 27.127 hybrid contribution 1.339 0.726 1.040 1.845 sum -19.177 17.939 -3.283 26.464 Atomic orbital electron populations 1.24933 0.96042 1.00818 1.00976 1.23087 0.94583 1.00524 1.00472 1.18767 0.84929 0.99949 1.01390 1.21280 0.92833 0.98736 1.00915 1.21688 0.97527 0.98097 1.00839 1.20673 0.82027 0.85533 0.81668 1.90727 1.55201 1.47467 1.48018 1.45669 1.06979 1.33583 1.49931 1.21474 0.93634 0.87493 0.93476 0.87914 1.23513 0.94886 0.98097 1.00748 1.22881 0.92136 0.92824 0.95961 0.91392 1.60238 1.12775 1.46933 1.08431 1.21729 0.95519 0.98053 0.92971 1.19830 0.85078 0.86319 0.86158 1.90521 1.74349 1.59668 1.22183 1.41865 1.26501 1.41734 1.09966 1.19707 1.04913 1.21294 0.96986 0.87927 1.25256 0.99294 0.98614 0.94749 1.69611 1.39261 1.44992 1.00486 0.85862 0.80647 0.79916 0.77893 1.20442 1.20926 1.19392 1.23099 0.95373 0.96864 0.95880 1.22499 1.02736 0.96153 0.92599 1.22841 1.01763 0.96955 0.96239 1.22741 1.01255 0.95860 0.96874 0.76695 0.89398 0.89473 0.90716 0.90618 0.88468 0.88602 0.76523 0.88166 0.91493 0.82972 0.94059 0.89704 0.77502 0.91896 0.88621 0.90923 0.90459 0.91361 0.91549 0.89791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -1.57 19.25 29.55 0.57 -1.00 16 2 C -0.19 -1.50 13.34 -37.13 -0.50 -2.00 16 3 C -0.01 -0.08 5.70 -29.52 -0.17 -0.24 16 4 C -0.10 -0.68 4.46 -26.73 -0.12 -0.80 16 5 C -0.14 -0.76 5.70 -27.89 -0.16 -0.92 16 6 C 0.51 4.74 7.83 -10.98 -0.09 4.65 16 7 O -0.54 -7.33 15.62 5.56 0.09 -7.24 16 8 N -0.71 -5.70 4.87 -53.37 -0.26 -5.96 16 9 C 0.15 1.46 4.07 -67.48 -0.27 1.19 16 10 H 0.10 1.21 7.54 -51.93 -0.39 0.82 16 11 C -0.13 -1.55 7.68 -25.75 -0.20 -1.75 16 12 C 0.07 0.84 3.92 -67.26 -0.26 0.57 16 13 H 0.07 0.72 7.90 -51.93 -0.41 0.31 16 14 N -0.65 -10.01 5.90 -107.51 -0.63 -10.64 16 15 C 0.05 0.86 6.03 -4.97 -0.03 0.83 16 16 C 0.44 10.29 7.82 -10.98 -0.09 10.21 16 17 O -0.58 -15.67 15.78 5.55 0.09 -15.58 16 18 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 19 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 16 20 H 0.10 3.00 7.16 -52.48 -0.38 2.62 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 23 Si 0.93 21.00 29.55 -169.99 -5.02 15.98 16 24 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 27 C -0.11 -1.08 0.84 -154.72 -0.13 -1.21 16 28 C -0.10 -1.05 7.37 -26.28 -0.19 -1.24 16 29 C -0.14 -1.21 8.08 -25.75 -0.21 -1.42 16 30 C -0.13 -1.07 7.60 -26.28 -0.20 -1.27 16 31 H 0.22 0.91 7.80 -54.10 -0.42 0.48 16 32 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.62 8.10 -51.93 -0.42 0.19 16 35 H 0.08 0.65 8.10 -51.93 -0.42 0.22 16 36 H 0.10 0.35 8.14 -51.93 -0.42 -0.07 16 37 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.40 2.28 8.28 -40.82 -0.34 1.94 16 39 H 0.10 1.32 8.14 -51.93 -0.42 0.90 16 40 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 41 H 0.35 5.55 6.74 -39.29 -0.27 5.28 16 42 H 0.04 0.64 8.13 -51.93 -0.42 0.21 16 43 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 44 H 0.39 9.44 7.90 -40.82 -0.32 9.11 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.10 1.11 6.76 -51.93 -0.35 0.75 16 47 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 48 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 49 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 50 H 0.07 0.47 7.51 -51.93 -0.39 0.08 16 51 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 426.06 15.07 6.42 6.42 Total: -1.00 -33.92 426.06 -9.25 -43.17 By element: Atomic # 1 Polarization: 22.52 SS G_CDS: -8.31 Total: 14.21 kcal Atomic # 6 Polarization: -0.08 SS G_CDS: -2.28 Total: -2.36 kcal Atomic # 7 Polarization: -54.36 SS G_CDS: -0.23 Total: -54.59 kcal Atomic # 8 Polarization: -23.00 SS G_CDS: 0.17 Total: -22.82 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.42 Total: 6.42 kcal Total: -33.92 -9.25 -43.17 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202833148.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.277 kcal (2) G-P(sol) polarization free energy of solvation -33.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.254 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds