Wall clock time and date at job start Wed Apr 1 2020 04:36:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47194 * 179.97438 * 2 1 4 4 C 1.53003 * 109.47739 * 37.90022 * 3 2 1 5 5 C 1.52992 * 109.47500 * 179.97438 * 4 3 2 6 6 C 1.50701 * 109.47248 * 180.02562 * 5 4 3 7 7 O 1.21282 * 119.99747 * 359.97438 * 6 5 4 8 8 N 1.34780 * 120.00277 * 180.02562 * 6 5 4 9 9 C 1.46500 * 119.99897 * 180.02562 * 8 6 5 10 10 H 1.09001 * 112.88947 * 26.83236 * 9 8 6 11 11 C 1.53946 * 113.65918 * 255.48634 * 9 8 6 12 12 C 1.53949 * 87.29722 * 270.17153 * 11 9 8 13 13 H 1.08995 * 113.66128 * 89.83109 * 12 11 9 14 14 N 1.46906 * 113.66240 * 220.79689 * 12 11 9 15 15 C 1.46902 * 110.99573 * 255.49442 * 14 12 11 16 16 C 1.50707 * 109.46656 * 179.97438 * 15 14 12 17 17 O 1.21294 * 120.00016 * 0.02562 * 16 15 14 18 18 N 1.34783 * 119.99715 * 179.97438 * 16 15 14 19 19 C 1.37092 * 119.99635 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00232 * 359.97438 * 19 18 16 21 21 C 1.38952 * 119.99714 * 180.02562 * 19 18 16 22 22 N 1.31413 * 120.00244 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99808 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46862 * 90.00107 * 23 21 19 25 25 H 1.48500 * 109.46905 * 209.99678 * 23 21 19 26 26 H 1.48499 * 109.47390 * 329.99751 * 23 21 19 27 27 C 1.52907 * 86.78080 * 335.26548 * 12 11 9 28 28 C 1.52907 * 121.13646 * 259.17811 * 27 12 11 29 29 C 1.53951 * 86.78321 * 209.38297 * 28 27 12 30 30 C 1.52909 * 121.13395 * 150.61805 * 27 12 11 31 31 H 4.44655 * 5.63271 * 180.02562 * 4 1 2 32 32 H 1.09005 * 109.47429 * 277.89558 * 3 2 1 33 33 H 1.09006 * 109.47092 * 157.90143 * 3 2 1 34 34 H 1.09005 * 109.47039 * 59.99298 * 4 3 2 35 35 H 1.09006 * 109.46928 * 300.00222 * 4 3 2 36 36 H 1.08997 * 109.47173 * 60.00059 * 5 4 3 37 37 H 1.09002 * 109.47187 * 299.99723 * 5 4 3 38 38 H 0.96992 * 119.99589 * 359.97438 * 8 6 5 39 39 H 1.09003 * 113.57890 * 155.56855 * 11 9 8 40 40 H 1.08999 * 113.65193 * 24.78902 * 11 9 8 41 41 H 1.00896 * 111.00309 * 131.53854 * 14 12 11 42 42 H 1.08990 * 109.47358 * 299.99539 * 15 14 12 43 43 H 1.09004 * 109.47457 * 60.00221 * 15 14 12 44 44 H 0.96993 * 119.99587 * 0.02562 * 18 16 15 45 45 H 0.96997 * 119.99955 * 180.02562 * 22 21 19 46 46 H 1.08997 * 113.66620 * 323.85296 * 28 27 12 47 47 H 1.09004 * 113.66197 * 94.91771 * 28 27 12 48 48 H 1.09004 * 113.58235 * 270.13651 * 29 28 27 49 49 H 1.08997 * 113.65077 * 139.34678 * 29 28 27 50 50 H 1.09000 * 113.66162 * 265.08903 * 30 27 12 51 51 H 1.08999 * 113.66477 * 36.14627 * 30 27 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1566 -1.1373 -0.8861 5 6 4.6866 -1.1362 -0.8866 6 6 5.1895 -2.2567 -1.7598 7 8 4.4017 -2.9848 -2.3257 8 7 6.5147 -2.4504 -1.9112 9 6 7.0035 -3.5393 -2.7606 10 1 6.3002 -3.8116 -3.5476 11 6 7.5430 -4.7450 -1.9699 12 6 8.9199 -4.0571 -2.0019 13 1 9.0969 -3.3931 -1.1559 14 7 10.0353 -4.9816 -2.2457 15 6 10.7825 -5.2428 -1.0082 16 6 11.9158 -6.1934 -1.2969 17 8 12.0846 -6.6116 -2.4229 18 7 12.7423 -6.5779 -0.3041 19 6 13.7735 -7.4422 -0.5669 20 1 13.9234 -7.8153 -1.5693 21 6 14.6253 -7.8391 0.4567 22 7 14.4427 -7.3856 1.6765 23 14 16.0300 -9.0173 0.0988 24 1 17.2418 -8.2440 -0.2739 25 1 16.3143 -9.8305 1.3083 26 1 15.6506 -9.9139 -1.0226 27 6 8.4344 -3.3360 -3.2598 28 6 8.8598 -3.8024 -4.6524 29 6 8.7135 -2.3348 -5.0938 30 6 8.9546 -1.9450 -3.6241 31 1 -1.0498 -0.0001 -0.0004 32 1 3.0094 -0.1404 1.0179 33 1 3.0089 0.9530 -0.3866 34 1 2.7932 -0.9963 -1.9040 35 1 2.7937 -2.0897 -0.4995 36 1 5.0503 -1.2770 0.1312 37 1 5.0491 -0.1838 -1.2735 38 1 7.1446 -1.8683 -1.4583 39 1 7.5104 -5.6815 -2.5268 40 1 7.1232 -4.8341 -0.9680 41 1 10.6449 -4.6301 -2.9688 42 1 11.1833 -4.3061 -0.6211 43 1 10.1163 -5.6864 -0.2682 44 1 12.6075 -6.2431 0.5961 45 1 15.0375 -7.6624 2.3909 46 1 9.8842 -4.1723 -4.6961 47 1 8.1445 -4.4750 -5.1260 48 1 7.7151 -2.0849 -5.4530 49 1 9.5015 -2.0005 -5.7685 50 1 8.3151 -1.1338 -3.2761 51 1 10.0056 -1.7928 -3.3786 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202833148.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:43 Heat of formation + Delta-G solvation = -10.102596 kcal Electronic energy + Delta-G solvation = -29573.581944 eV Core-core repulsion = 25474.297083 eV Total energy + Delta-G solvation = -4099.284861 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.11749 -40.31336 -39.96408 -36.64601 -36.45863 -36.01292 -35.39973 -33.51829 -33.23754 -32.75402 -29.08566 -28.30674 -26.76057 -26.24490 -25.48493 -24.38601 -23.09737 -21.79786 -21.12234 -21.08991 -19.91753 -19.34651 -18.93173 -18.03785 -17.78572 -17.13544 -16.98016 -16.78030 -16.40636 -16.23576 -15.97612 -15.80227 -15.56188 -15.31638 -14.99593 -14.83164 -14.48682 -14.17816 -13.81613 -13.62220 -13.51411 -13.47427 -13.31856 -13.19874 -12.91641 -12.88195 -12.73327 -12.58736 -12.43886 -12.40553 -12.12575 -12.02767 -11.90527 -11.50282 -11.31750 -11.17413 -11.08949 -10.95376 -10.86454 -10.81576 -10.31077 -10.00819 -9.98393 -9.27668 -8.46402 -5.94938 1.38022 1.42024 1.54607 1.68115 1.84870 1.93917 2.06197 2.17455 2.29482 2.94258 3.21137 3.34019 3.42400 3.53682 3.60293 3.76479 3.82378 3.83548 3.93403 3.97794 4.12442 4.19635 4.30356 4.45279 4.47165 4.49049 4.55435 4.60449 4.65479 4.71298 4.74394 4.80544 4.84218 4.89387 4.95543 5.03461 5.06352 5.11784 5.15824 5.22840 5.23317 5.35908 5.41305 5.44178 5.52784 5.60692 5.93915 6.17986 6.44538 6.60656 6.61149 6.73633 7.13267 7.31988 7.57096 8.12577 8.70911 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.015683 B = 0.001742 C = 0.001616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1784.897925 B =16065.449063 C =17319.964707 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C -0.215 4.215 3 C -0.011 4.011 4 C -0.095 4.095 5 C -0.131 4.131 6 C 0.510 3.490 7 O -0.590 6.590 8 N -0.697 5.697 9 C 0.155 3.845 10 H 0.083 0.917 11 C -0.137 4.137 12 C 0.075 3.925 13 H 0.091 0.909 14 N -0.666 5.666 15 C 0.066 3.934 16 C 0.437 3.563 17 O -0.623 6.623 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.078 0.922 21 C -0.011 4.011 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.275 1.275 27 C -0.101 4.101 28 C -0.113 4.113 29 C -0.134 4.134 30 C -0.119 4.119 31 H 0.237 0.763 32 H 0.105 0.895 33 H 0.108 0.892 34 H 0.053 0.947 35 H 0.050 0.950 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.417 0.583 39 H 0.077 0.923 40 H 0.067 0.933 41 H 0.345 0.655 42 H 0.070 0.930 43 H 0.098 0.902 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.081 0.919 47 H 0.062 0.938 48 H 0.081 0.919 49 H 0.074 0.926 50 H 0.087 0.913 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.523 21.038 -2.106 28.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.215 4.215 3 C -0.047 4.047 4 C -0.134 4.134 5 C -0.170 4.170 6 C 0.299 3.701 7 O -0.470 6.470 8 N -0.349 5.349 9 C 0.049 3.951 10 H 0.101 0.899 11 C -0.177 4.177 12 C -0.035 4.035 13 H 0.108 0.892 14 N -0.299 5.299 15 C -0.067 4.067 16 C 0.225 3.775 17 O -0.510 6.510 18 N -0.210 5.210 19 C -0.464 4.464 20 H 0.096 0.904 21 C -0.211 4.211 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.195 1.195 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.102 4.102 28 C -0.151 4.151 29 C -0.171 4.171 30 C -0.156 4.156 31 H 0.254 0.746 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.072 0.928 35 H 0.069 0.931 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.254 0.746 39 H 0.096 0.904 40 H 0.086 0.914 41 H 0.166 0.834 42 H 0.087 0.913 43 H 0.116 0.884 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.081 0.919 48 H 0.099 0.901 49 H 0.092 0.908 50 H 0.105 0.895 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -20.228 19.655 -3.005 28.364 hybrid contribution 1.169 -0.055 0.597 1.313 sum -19.060 19.600 -2.408 27.445 Atomic orbital electron populations 1.25707 0.97165 1.00551 1.00749 1.23895 0.95945 1.00885 1.00819 1.18872 0.83564 1.00173 1.02105 1.21177 0.94147 0.98158 0.99877 1.21717 0.96038 0.97739 1.01503 1.21433 0.81743 0.85741 0.81221 1.90717 1.56473 1.49558 1.50212 1.45543 1.07130 1.32919 1.49295 1.21186 0.93329 0.87608 0.93020 0.89884 1.23480 0.95594 0.97967 1.00667 1.22983 0.90200 0.92609 0.97679 0.89158 1.60195 1.13186 1.48918 1.07614 1.21577 0.93516 0.97506 0.94057 1.20928 0.85527 0.85994 0.85075 1.90492 1.75518 1.61135 1.23822 1.41928 1.26633 1.41898 1.10583 1.19663 1.06981 1.23310 0.96469 0.90410 1.26009 1.01072 0.99654 0.94389 1.69667 1.39988 1.45434 1.00959 0.84949 0.77765 0.77898 0.77856 1.19507 1.19583 1.19943 1.22977 0.94643 0.97937 0.94658 1.22521 1.01604 0.97407 0.93587 1.22807 1.02223 0.95177 0.96904 1.22718 1.01706 0.95104 0.96071 0.74628 0.87643 0.87369 0.92781 0.93105 0.85733 0.85317 0.74597 0.90397 0.91439 0.83418 0.91269 0.88397 0.76984 0.91316 0.90101 0.91896 0.90050 0.90772 0.89476 0.89529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.23 -3.21 19.25 74.32 1.43 -1.78 16 2 C -0.22 -3.28 13.34 31.12 0.42 -2.87 16 3 C -0.01 -0.10 5.70 28.79 0.16 0.07 16 4 C -0.10 -1.20 4.46 30.59 0.14 -1.06 16 5 C -0.13 -1.00 5.70 29.85 0.17 -0.83 16 6 C 0.51 8.58 7.83 87.66 0.69 9.26 16 7 O -0.59 -16.24 15.62 -3.04 -0.05 -16.28 16 8 N -0.70 -9.52 4.87 -441.15 -2.15 -11.67 16 9 C 0.16 3.00 4.07 45.28 0.18 3.18 16 10 H 0.08 1.99 7.54 -2.39 -0.02 1.98 16 11 C -0.14 -3.15 7.68 31.23 0.24 -2.91 16 12 C 0.08 1.61 3.92 45.20 0.18 1.78 16 13 H 0.09 1.59 7.90 -2.39 -0.02 1.57 16 14 N -0.67 -20.04 5.90 -494.06 -2.92 -22.96 16 15 C 0.07 2.18 6.03 85.56 0.52 2.70 16 16 C 0.44 20.59 7.82 87.66 0.69 21.28 16 17 O -0.62 -34.39 15.78 -3.07 -0.05 -34.44 16 18 N -0.57 -29.21 5.29 -306.97 -1.62 -30.84 16 19 C -0.33 -18.99 9.68 84.04 0.81 -18.18 16 20 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 21 C -0.01 -0.61 5.50 84.93 0.47 -0.14 16 22 N -0.92 -49.26 13.05 21.66 0.28 -48.98 16 23 Si 0.99 42.83 29.55 68.60 2.03 44.85 16 24 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 25 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 26 H -0.27 -11.99 7.11 99.48 0.71 -11.29 16 27 C -0.10 -1.82 0.84 -52.32 -0.04 -1.86 16 28 C -0.11 -2.32 7.37 30.88 0.23 -2.09 16 29 C -0.13 -2.09 8.08 31.23 0.25 -1.83 16 30 C -0.12 -1.63 7.60 30.89 0.23 -1.40 16 31 H 0.24 1.80 7.80 -4.43 -0.03 1.76 16 32 H 0.11 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.11 0.52 8.14 -2.38 -0.02 0.50 16 34 H 0.05 0.89 8.10 -2.38 -0.02 0.87 16 35 H 0.05 0.88 8.10 -2.38 -0.02 0.86 16 36 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 37 H 0.13 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.42 3.08 8.28 -92.71 -0.77 2.32 16 39 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 40 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.34 10.90 6.74 -89.70 -0.60 10.30 16 42 H 0.07 1.94 8.13 -2.39 -0.02 1.92 16 43 H 0.10 3.03 8.14 -2.38 -0.02 3.01 16 44 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 45 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 46 H 0.08 1.92 6.76 -2.39 -0.02 1.90 16 47 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 48 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 49 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 50 H 0.09 0.87 7.51 -2.39 -0.02 0.85 16 51 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 Total: -1.00 -76.74 426.06 1.13 -75.61 By element: Atomic # 1 Polarization: 42.55 SS G_CDS: -1.15 Total: 41.39 kcal Atomic # 6 Polarization: -3.45 SS G_CDS: 6.76 Total: 3.31 kcal Atomic # 7 Polarization: -108.04 SS G_CDS: -6.40 Total: -114.45 kcal Atomic # 8 Polarization: -50.63 SS G_CDS: -0.10 Total: -50.72 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.85 kcal Total: -76.74 1.13 -75.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202833148.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.507 kcal (2) G-P(sol) polarization free energy of solvation -76.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds