Wall clock time and date at job start Wed Apr 1 2020 04:36:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46956 * 2 1 4 4 C 1.47202 * 109.47052 * 119.99621 * 2 1 3 5 5 C 2.64602 * 109.47007 * 119.99614 * 2 1 3 6 6 C 4.07803 * 109.47135 * 119.99748 * 2 1 3 7 7 O 1.21616 * 119.99752 * 221.10697 * 6 5 4 8 8 N 1.34775 * 120.00455 * 41.11031 * 6 5 4 9 9 C 1.46498 * 120.00294 * 179.97438 * 8 6 5 10 10 H 1.08998 * 112.88424 * 333.16230 * 9 8 6 11 11 C 1.53948 * 113.65949 * 104.50432 * 9 8 6 12 12 C 1.53952 * 87.29486 * 89.83249 * 11 9 8 13 13 H 1.08999 * 113.66034 * 270.16532 * 12 11 9 14 14 N 1.46893 * 113.66458 * 139.20554 * 12 11 9 15 15 C 1.46903 * 111.00154 * 104.50328 * 14 12 11 16 16 C 1.50699 * 109.46994 * 180.02562 * 15 14 12 17 17 O 1.21293 * 120.00471 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99768 * 179.97438 * 16 15 14 19 19 C 1.37106 * 119.99958 * 179.97438 * 18 16 15 20 20 H 1.07992 * 120.00328 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99689 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00367 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99822 * 180.27886 * 21 19 18 24 24 H 1.48497 * 109.47322 * 179.73003 * 23 21 19 25 25 H 1.48506 * 109.47056 * 299.72747 * 23 21 19 26 26 H 1.48501 * 109.47099 * 59.72776 * 23 21 19 27 27 C 1.52905 * 113.74731 * 201.73331 * 9 8 6 28 28 C 1.52902 * 121.13730 * 36.14298 * 27 9 8 29 29 C 1.53956 * 86.78373 * 100.81053 * 28 27 9 30 30 C 1.52912 * 121.13192 * 144.69713 * 27 9 8 31 31 H 1.09002 * 109.47288 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47571 * 299.99617 * 1 2 3 33 33 H 1.09003 * 109.47105 * 60.00276 * 1 2 3 34 34 H 1.08989 * 109.47463 * 240.00398 * 2 1 3 35 35 H 1.08995 * 109.46947 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.47184 * 300.00020 * 3 2 1 37 37 H 1.09003 * 109.46668 * 59.99830 * 3 2 1 38 38 H 0.97001 * 119.99574 * 0.02562 * 8 6 5 39 39 H 1.09001 * 113.58337 * 335.22592 * 11 9 8 40 40 H 1.09004 * 113.65043 * 204.44315 * 11 9 8 41 41 H 1.00897 * 111.00154 * 228.46050 * 14 12 11 42 42 H 1.08998 * 109.47190 * 60.00028 * 15 14 12 43 43 H 1.08997 * 109.47280 * 300.00019 * 15 14 12 44 44 H 0.97000 * 120.00327 * 0.02562 * 18 16 15 45 45 H 0.97005 * 120.00032 * 179.97438 * 22 21 19 46 46 H 1.09002 * 113.66520 * 215.28444 * 28 27 9 47 47 H 1.09003 * 113.66715 * 346.34065 * 28 27 9 48 48 H 1.08994 * 113.57788 * 270.13365 * 29 28 27 49 49 H 1.08999 * 113.64795 * 139.35133 * 29 28 27 50 50 H 1.08996 * 113.66097 * 13.65969 * 30 27 9 51 51 H 1.08998 * 113.65784 * 144.61921 * 30 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0206 -0.6938 1.2020 5 6 2.4119 -1.2472 2.1606 6 6 2.8893 -1.9223 3.3298 7 8 3.4135 -1.2890 4.2260 8 7 2.7578 -3.2593 3.4370 9 6 3.2467 -3.9499 4.6329 10 1 4.0661 -3.4228 5.1216 11 6 2.1275 -4.3822 5.5976 12 6 2.0662 -5.7075 4.8166 13 1 1.3693 -5.6895 3.9787 14 7 1.8995 -6.8893 5.6729 15 6 0.5228 -7.3975 5.6068 16 6 0.3904 -8.6066 6.4964 17 8 1.3487 -9.0061 7.1235 18 7 -0.7930 -9.2441 6.5953 19 6 -0.9133 -10.3445 7.4042 20 1 -0.0601 -10.7002 7.9625 21 6 -2.1334 -11.0014 7.5065 22 7 -3.1719 -10.5683 6.8275 23 14 -2.2995 -12.4960 8.6147 24 1 -3.6929 -13.0058 8.5529 25 1 -1.3641 -13.5560 8.1598 26 1 -1.9734 -12.1146 10.0124 27 6 3.5174 -5.4392 4.4165 28 6 4.0811 -5.9561 3.0925 29 6 5.4479 -6.0177 3.7983 30 6 4.6758 -6.1431 5.1241 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5137 -0.8899 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6765 1.9564 0.8900 38 1 2.3401 -3.7644 2.7219 39 1 1.2214 -3.7826 5.5110 40 1 2.4602 -4.4989 6.6290 41 1 2.5628 -7.6093 5.4286 42 1 0.2866 -7.6742 4.5793 43 1 -0.1669 -6.6229 5.9421 44 1 -1.5593 -8.9249 6.0935 45 1 -4.0236 -11.0272 6.8987 46 1 3.6934 -6.9330 2.8036 47 1 4.0387 -5.2261 2.2841 48 1 6.0238 -5.0961 3.7146 49 1 6.0301 -6.9044 3.5472 50 1 5.1083 -5.5625 5.9389 51 1 4.4546 -7.1721 5.4077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202869110.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:47 Heat of formation + Delta-G solvation = 15.760515 kcal Electronic energy + Delta-G solvation = -29515.951562 eV Core-core repulsion = 25417.788209 eV Total energy + Delta-G solvation = -4098.163353 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.29691 -39.33387 -38.15094 -36.85615 -35.62945 -34.65245 -33.82155 -32.70358 -31.67879 -31.17239 -27.73855 -27.08187 -26.01885 -25.20413 -24.77002 -24.03031 -22.82738 -21.83078 -20.76277 -19.31684 -19.28346 -18.02388 -17.84922 -16.82649 -16.55283 -16.18045 -15.66828 -15.38375 -15.16576 -15.13953 -15.00595 -14.53903 -14.44094 -14.11145 -14.01411 -13.71303 -13.39954 -12.91589 -12.78902 -12.62585 -12.53903 -12.41512 -12.06986 -12.04952 -11.94989 -11.91345 -11.89974 -11.57981 -11.41108 -11.19137 -11.00712 -10.88824 -10.67068 -10.51707 -10.46585 -10.43972 -10.24481 -10.20522 -10.03976 -9.49926 -9.27638 -8.43906 -8.06538 -7.95779 -6.41689 -3.82567 1.24331 1.92182 2.69713 3.20110 3.21300 3.25744 3.30207 3.75520 3.91141 4.06932 4.13863 4.25905 4.38926 4.42321 4.54079 4.56872 4.58767 4.65641 4.73226 4.80732 4.94417 5.07939 5.15641 5.24746 5.25673 5.26630 5.30346 5.33773 5.42206 5.48536 5.54245 5.65520 5.66328 5.66522 5.73204 5.75271 5.78001 5.85077 5.94839 5.99063 6.05003 6.22235 6.25137 6.31517 6.38686 6.86140 7.12488 7.27733 7.54969 7.66624 7.81946 8.06262 8.61312 9.17805 9.54416 10.05883 10.75960 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012623 B = 0.001911 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.623850 B =14650.906444 C =16184.166136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.007 3.993 3 C -0.148 4.148 4 C -0.071 4.071 5 C -0.226 4.226 6 C 0.637 3.363 7 O -0.521 6.521 8 N -0.696 5.696 9 C 0.145 3.855 10 H 0.108 0.892 11 C -0.133 4.133 12 C 0.072 3.928 13 H 0.069 0.931 14 N -0.650 5.650 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.300 4.300 20 H 0.102 0.898 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.931 3.069 24 H -0.285 1.285 25 H -0.274 1.274 26 H -0.273 1.273 27 C -0.111 4.111 28 C -0.131 4.131 29 C -0.141 4.141 30 C -0.101 4.101 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.070 0.930 37 H 0.062 0.938 38 H 0.404 0.596 39 H 0.068 0.932 40 H 0.103 0.897 41 H 0.349 0.651 42 H 0.042 0.958 43 H 0.085 0.915 44 H 0.392 0.608 45 H 0.272 0.728 46 H 0.085 0.915 47 H 0.066 0.934 48 H 0.077 0.923 49 H 0.068 0.932 50 H 0.073 0.927 51 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.669 19.351 -17.335 27.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.011 4.011 3 C -0.205 4.205 4 C -0.074 4.074 5 C -0.229 4.229 6 C 0.424 3.576 7 O -0.398 6.398 8 N -0.346 5.346 9 C 0.040 3.960 10 H 0.126 0.874 11 C -0.172 4.172 12 C -0.039 4.039 13 H 0.087 0.913 14 N -0.283 5.283 15 C -0.083 4.083 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.200 5.200 19 C -0.429 4.429 20 H 0.120 0.880 21 C -0.179 4.179 22 N -0.544 5.544 23 Si 0.758 3.242 24 H -0.210 1.210 25 H -0.199 1.199 26 H -0.199 1.199 27 C -0.112 4.112 28 C -0.168 4.168 29 C -0.178 4.178 30 C -0.139 4.139 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.081 0.919 38 H 0.239 0.761 39 H 0.087 0.913 40 H 0.122 0.878 41 H 0.171 0.829 42 H 0.060 0.940 43 H 0.103 0.897 44 H 0.225 0.775 45 H 0.082 0.918 46 H 0.103 0.897 47 H 0.084 0.916 48 H 0.096 0.904 49 H 0.087 0.913 50 H 0.092 0.908 51 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.379 19.794 -15.669 27.295 hybrid contribution -1.066 -1.241 -1.027 1.932 sum 9.313 18.553 -16.696 26.640 Atomic orbital electron populations 1.21853 0.92540 1.03002 1.03039 1.18542 0.96416 0.95353 0.90766 1.21863 1.01785 0.93882 1.02970 1.22666 0.93930 0.96683 0.94103 1.20666 1.04060 1.01968 0.96173 1.14627 0.78372 0.81603 0.83026 1.90871 1.43132 1.66116 1.39686 1.45448 1.61211 1.06325 1.21642 1.21552 0.98045 0.90734 0.85709 0.87436 1.23535 0.98266 0.95580 0.99830 1.22891 0.94794 0.92104 0.94079 0.91332 1.60233 1.04433 1.08956 1.54698 1.21733 0.91422 0.97241 0.97920 1.19817 0.84424 0.86244 0.86883 1.90520 1.38548 1.68435 1.49234 1.41863 1.09928 1.26748 1.41508 1.19657 0.97309 1.04112 1.21863 0.87969 1.25261 0.94982 0.99574 0.98119 1.69606 1.01541 1.41400 1.41824 0.85916 0.77094 0.80935 0.80257 1.20993 1.19936 1.19867 1.23101 0.95270 0.94662 0.98165 1.22753 0.96894 1.01341 0.95838 1.22845 0.96138 1.01997 0.96816 1.22500 0.93480 1.01390 0.96504 0.91821 0.91872 0.91030 0.87991 0.91947 0.91119 0.91857 0.76113 0.91317 0.87822 0.82932 0.94039 0.89672 0.77494 0.91838 0.89676 0.91552 0.90390 0.91290 0.90804 0.88520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.15 37.15 0.34 -0.31 16 2 C 0.01 0.04 3.30 -93.40 -0.31 -0.27 16 3 C -0.15 -0.67 9.15 37.16 0.34 -0.33 16 4 C -0.07 -0.61 12.56 -37.12 -0.47 -1.08 16 5 C -0.23 -2.40 13.61 -38.84 -0.53 -2.93 16 6 C 0.64 7.71 7.65 -14.33 -0.11 7.60 16 7 O -0.52 -8.20 16.73 5.26 0.09 -8.11 16 8 N -0.70 -6.79 4.86 -55.81 -0.27 -7.06 16 9 C 0.14 1.54 4.07 -67.49 -0.27 1.26 16 10 H 0.11 1.26 7.54 -51.93 -0.39 0.87 16 11 C -0.13 -1.58 7.68 -25.75 -0.20 -1.78 16 12 C 0.07 0.85 3.92 -67.27 -0.26 0.59 16 13 H 0.07 0.76 7.90 -51.93 -0.41 0.35 16 14 N -0.65 -10.08 5.90 -107.52 -0.63 -10.72 16 15 C 0.05 0.86 6.03 -4.97 -0.03 0.83 16 16 C 0.44 10.34 7.82 -10.99 -0.09 10.26 16 17 O -0.58 -15.71 15.78 5.55 0.09 -15.62 16 18 N -0.56 -14.28 5.29 -10.96 -0.06 -14.34 16 19 C -0.30 -8.37 9.68 -14.93 -0.14 -8.52 16 20 H 0.10 2.99 7.16 -52.49 -0.38 2.61 16 21 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 22 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 23 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 C -0.11 -1.11 0.84 -154.72 -0.13 -1.24 16 28 C -0.13 -1.14 7.60 -26.28 -0.20 -1.34 16 29 C -0.14 -1.23 8.08 -25.75 -0.21 -1.44 16 30 C -0.10 -1.04 7.38 -26.28 -0.19 -1.23 16 31 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.10 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.40 3.13 8.24 -40.82 -0.34 2.79 16 39 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 40 H 0.10 1.35 8.14 -51.93 -0.42 0.93 16 41 H 0.35 5.58 6.74 -39.29 -0.26 5.31 16 42 H 0.04 0.65 8.13 -51.93 -0.42 0.23 16 43 H 0.09 1.41 8.14 -51.93 -0.42 0.98 16 44 H 0.39 9.49 7.90 -40.82 -0.32 9.17 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 46 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 0.52 7.51 -51.93 -0.39 0.13 16 48 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.10 1.11 6.75 -51.93 -0.35 0.76 16 LS Contribution 426.66 15.07 6.43 6.43 Total: -1.00 -33.11 426.66 -9.53 -42.64 By element: Atomic # 1 Polarization: 22.29 SS G_CDS: -8.32 Total: 13.97 kcal Atomic # 6 Polarization: 3.12 SS G_CDS: -2.56 Total: 0.56 kcal Atomic # 7 Polarization: -55.69 SS G_CDS: -0.24 Total: -55.93 kcal Atomic # 8 Polarization: -23.90 SS G_CDS: 0.18 Total: -23.73 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 6.43 Total: 6.43 kcal Total: -33.11 -9.53 -42.64 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202869110.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.405 kcal (2) G-P(sol) polarization free energy of solvation -33.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.761 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds