Wall clock time and date at job start Wed Apr 1 2020 04:36:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53008 * 109.46956 * 2 1 4 4 C 1.47202 * 109.47052 * 119.99621 * 2 1 3 5 5 C 2.64602 * 109.47007 * 119.99614 * 2 1 3 6 6 C 4.07803 * 109.47135 * 119.99748 * 2 1 3 7 7 O 1.21616 * 119.99752 * 221.10697 * 6 5 4 8 8 N 1.34775 * 120.00455 * 41.11031 * 6 5 4 9 9 C 1.46498 * 120.00294 * 179.97438 * 8 6 5 10 10 H 1.08998 * 112.88424 * 333.16230 * 9 8 6 11 11 C 1.53948 * 113.65949 * 104.50432 * 9 8 6 12 12 C 1.53952 * 87.29486 * 89.83249 * 11 9 8 13 13 H 1.08999 * 113.66034 * 270.16532 * 12 11 9 14 14 N 1.46893 * 113.66458 * 139.20554 * 12 11 9 15 15 C 1.46903 * 111.00154 * 104.50328 * 14 12 11 16 16 C 1.50699 * 109.46994 * 180.02562 * 15 14 12 17 17 O 1.21293 * 120.00471 * 359.97438 * 16 15 14 18 18 N 1.34777 * 119.99768 * 179.97438 * 16 15 14 19 19 C 1.37106 * 119.99958 * 179.97438 * 18 16 15 20 20 H 1.07992 * 120.00328 * 0.02562 * 19 18 16 21 21 C 1.38947 * 119.99689 * 179.97438 * 19 18 16 22 22 N 1.31414 * 120.00367 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99822 * 180.27886 * 21 19 18 24 24 H 1.48497 * 109.47322 * 179.73003 * 23 21 19 25 25 H 1.48506 * 109.47056 * 299.72747 * 23 21 19 26 26 H 1.48501 * 109.47099 * 59.72776 * 23 21 19 27 27 C 1.52905 * 113.74731 * 201.73331 * 9 8 6 28 28 C 1.52902 * 121.13730 * 36.14298 * 27 9 8 29 29 C 1.53956 * 86.78373 * 100.81053 * 28 27 9 30 30 C 1.52912 * 121.13192 * 144.69713 * 27 9 8 31 31 H 1.09002 * 109.47288 * 180.02562 * 1 2 3 32 32 H 1.09003 * 109.47571 * 299.99617 * 1 2 3 33 33 H 1.09003 * 109.47105 * 60.00276 * 1 2 3 34 34 H 1.08989 * 109.47463 * 240.00398 * 2 1 3 35 35 H 1.08995 * 109.46947 * 179.97438 * 3 2 1 36 36 H 1.08995 * 109.47184 * 300.00020 * 3 2 1 37 37 H 1.09003 * 109.46668 * 59.99830 * 3 2 1 38 38 H 0.97001 * 119.99574 * 0.02562 * 8 6 5 39 39 H 1.09001 * 113.58337 * 335.22592 * 11 9 8 40 40 H 1.09004 * 113.65043 * 204.44315 * 11 9 8 41 41 H 1.00897 * 111.00154 * 228.46050 * 14 12 11 42 42 H 1.08998 * 109.47190 * 60.00028 * 15 14 12 43 43 H 1.08997 * 109.47280 * 300.00019 * 15 14 12 44 44 H 0.97000 * 120.00327 * 0.02562 * 18 16 15 45 45 H 0.97005 * 120.00032 * 179.97438 * 22 21 19 46 46 H 1.09002 * 113.66520 * 215.28444 * 28 27 9 47 47 H 1.09003 * 113.66715 * 346.34065 * 28 27 9 48 48 H 1.08994 * 113.57788 * 270.13365 * 29 28 27 49 49 H 1.08999 * 113.64795 * 139.35133 * 29 28 27 50 50 H 1.08996 * 113.66097 * 13.65969 * 30 27 9 51 51 H 1.08998 * 113.65784 * 144.61921 * 30 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0206 -0.6938 1.2020 5 6 2.4119 -1.2472 2.1606 6 6 2.8893 -1.9223 3.3298 7 8 3.4135 -1.2890 4.2260 8 7 2.7578 -3.2593 3.4370 9 6 3.2467 -3.9499 4.6329 10 1 4.0661 -3.4228 5.1216 11 6 2.1275 -4.3822 5.5976 12 6 2.0662 -5.7075 4.8166 13 1 1.3693 -5.6895 3.9787 14 7 1.8995 -6.8893 5.6729 15 6 0.5228 -7.3975 5.6068 16 6 0.3904 -8.6066 6.4964 17 8 1.3487 -9.0061 7.1235 18 7 -0.7930 -9.2441 6.5953 19 6 -0.9133 -10.3445 7.4042 20 1 -0.0601 -10.7002 7.9625 21 6 -2.1334 -11.0014 7.5065 22 7 -3.1719 -10.5683 6.8275 23 14 -2.2995 -12.4960 8.6147 24 1 -3.6929 -13.0058 8.5529 25 1 -1.3641 -13.5560 8.1598 26 1 -1.9734 -12.1146 10.0124 27 6 3.5174 -5.4392 4.4165 28 6 4.0811 -5.9561 3.0925 29 6 5.4479 -6.0177 3.7983 30 6 4.6758 -6.1431 5.1241 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 -0.3633 0.5138 -0.8900 34 1 1.8933 -0.5137 -0.8899 35 1 3.1299 1.4426 0.0005 36 1 1.6766 1.9564 -0.8899 37 1 1.6765 1.9564 0.8900 38 1 2.3401 -3.7644 2.7219 39 1 1.2214 -3.7826 5.5110 40 1 2.4602 -4.4989 6.6290 41 1 2.5628 -7.6093 5.4286 42 1 0.2866 -7.6742 4.5793 43 1 -0.1669 -6.6229 5.9421 44 1 -1.5593 -8.9249 6.0935 45 1 -4.0236 -11.0272 6.8987 46 1 3.6934 -6.9330 2.8036 47 1 4.0387 -5.2261 2.2841 48 1 6.0238 -5.0961 3.7146 49 1 6.0301 -6.9044 3.5472 50 1 5.1083 -5.5625 5.9389 51 1 4.4546 -7.1721 5.4077 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202869110.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:46 Heat of formation + Delta-G solvation = -6.393882 kcal Electronic energy + Delta-G solvation = -29516.912248 eV Core-core repulsion = 25417.788209 eV Total energy + Delta-G solvation = -4099.124040 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.20988 -40.34139 -39.97060 -37.34086 -36.61126 -36.08728 -35.50632 -33.64866 -33.23093 -32.47678 -28.59599 -28.06876 -26.81656 -26.51657 -25.78100 -25.22622 -23.73836 -22.57355 -21.61275 -21.10867 -20.17036 -19.92156 -18.85629 -18.07918 -17.36620 -17.13006 -16.95292 -16.49459 -16.28984 -16.25061 -16.04691 -15.89861 -15.56270 -15.46972 -14.99770 -14.81406 -14.42385 -14.19572 -13.79368 -13.51658 -13.44397 -13.33381 -13.11810 -12.99360 -12.95445 -12.89118 -12.78041 -12.65926 -12.46035 -12.42729 -12.34031 -12.12849 -12.06758 -11.67740 -11.50103 -11.34636 -11.32004 -11.22952 -11.11537 -10.93540 -10.32833 -10.16636 -10.01499 -9.30757 -8.46562 -5.95339 0.42857 1.18907 1.39748 1.41716 1.52542 1.88754 2.05662 2.29094 2.38872 2.90947 3.09599 3.20767 3.26772 3.39055 3.57156 3.75835 3.78885 3.87081 3.94996 4.03920 4.07472 4.16050 4.28292 4.41412 4.43953 4.46175 4.50514 4.58341 4.59960 4.76158 4.77764 4.83183 4.87271 4.93012 4.94055 4.97816 5.03033 5.09041 5.10797 5.12729 5.32019 5.34146 5.38246 5.40492 5.41417 5.52159 5.92439 6.14940 6.15680 6.30010 6.42744 6.60265 6.95327 7.12582 7.56454 8.11707 8.70546 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012623 B = 0.001911 C = 0.001730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2217.623850 B =14650.906444 C =16184.166136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.004 3.996 3 C -0.148 4.148 4 C -0.039 4.039 5 C -0.274 4.274 6 C 0.639 3.361 7 O -0.568 6.568 8 N -0.680 5.680 9 C 0.153 3.847 10 H 0.096 0.904 11 C -0.135 4.135 12 C 0.074 3.926 13 H 0.087 0.913 14 N -0.663 5.663 15 C 0.065 3.935 16 C 0.438 3.562 17 O -0.622 6.622 18 N -0.573 5.573 19 C -0.335 4.335 20 H 0.079 0.921 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.993 3.007 24 H -0.270 1.270 25 H -0.271 1.271 26 H -0.273 1.273 27 C -0.100 4.100 28 C -0.122 4.122 29 C -0.133 4.133 30 C -0.109 4.109 31 H 0.061 0.939 32 H 0.051 0.949 33 H 0.093 0.907 34 H 0.127 0.873 35 H 0.057 0.943 36 H 0.093 0.907 37 H 0.051 0.949 38 H 0.416 0.584 39 H 0.067 0.933 40 H 0.088 0.912 41 H 0.346 0.654 42 H 0.068 0.932 43 H 0.098 0.902 44 H 0.396 0.604 45 H 0.278 0.722 46 H 0.088 0.912 47 H 0.080 0.920 48 H 0.082 0.918 49 H 0.076 0.924 50 H 0.068 0.932 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.095 19.804 -19.844 29.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.014 4.014 3 C -0.205 4.205 4 C -0.042 4.042 5 C -0.277 4.277 6 C 0.427 3.573 7 O -0.448 6.448 8 N -0.330 5.330 9 C 0.047 3.953 10 H 0.114 0.886 11 C -0.175 4.175 12 C -0.036 4.036 13 H 0.105 0.895 14 N -0.296 5.296 15 C -0.068 4.068 16 C 0.226 3.774 17 O -0.508 6.508 18 N -0.211 5.211 19 C -0.464 4.464 20 H 0.097 0.903 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.195 1.195 25 H -0.196 1.196 26 H -0.199 1.199 27 C -0.102 4.102 28 C -0.160 4.160 29 C -0.171 4.171 30 C -0.147 4.147 31 H 0.081 0.919 32 H 0.071 0.929 33 H 0.111 0.889 34 H 0.145 0.855 35 H 0.076 0.924 36 H 0.112 0.888 37 H 0.070 0.930 38 H 0.254 0.746 39 H 0.086 0.914 40 H 0.107 0.893 41 H 0.167 0.833 42 H 0.086 0.914 43 H 0.116 0.884 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.107 0.893 47 H 0.098 0.902 48 H 0.100 0.900 49 H 0.095 0.905 50 H 0.087 0.913 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 9.781 20.246 -18.220 28.940 hybrid contribution -0.880 -1.306 -0.291 1.601 sum 8.901 18.940 -18.511 27.939 Atomic orbital electron populations 1.21868 0.91698 1.03124 1.03626 1.18879 0.96992 0.95583 0.89965 1.21885 1.01549 0.93442 1.03611 1.23475 0.91811 0.94983 0.93890 1.20539 1.06248 1.03915 0.96985 1.14818 0.77571 0.81959 0.82953 1.90839 1.45447 1.67093 1.41448 1.45293 1.60449 1.05755 1.21500 1.21365 0.97184 0.91004 0.85751 0.88629 1.23505 0.98637 0.95919 0.99435 1.22979 0.96450 0.90178 0.94007 0.89547 1.60195 1.03275 1.09678 1.56451 1.21584 0.92942 0.94600 0.97656 1.20879 0.83120 0.87020 0.86422 1.90490 1.39674 1.69831 1.50843 1.41933 1.10780 1.26687 1.41664 1.19638 0.97339 1.05995 1.23470 0.90302 1.26036 0.94252 1.01899 0.99076 1.69667 1.01859 1.42291 1.42298 0.84994 0.77639 0.77535 0.78197 1.19487 1.19587 1.19870 1.22991 0.94068 0.93789 0.99334 1.22741 0.96240 1.01750 0.95242 1.22811 0.96280 1.02569 0.95395 1.22514 0.94210 1.00561 0.97373 0.91944 0.92942 0.88854 0.85497 0.92377 0.88781 0.92976 0.74622 0.91427 0.89319 0.83282 0.91406 0.88390 0.77017 0.91306 0.89300 0.90186 0.89976 0.90521 0.91304 0.89767 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.15 71.98 0.66 -0.27 16 2 C 0.00 0.03 3.30 -12.60 -0.04 -0.01 16 3 C -0.15 -1.02 9.15 71.98 0.66 -0.36 16 4 C -0.04 -0.61 12.56 31.13 0.39 -0.22 16 5 C -0.27 -5.69 13.61 30.02 0.41 -5.28 16 6 C 0.64 15.54 7.65 85.49 0.65 16.19 16 7 O -0.57 -18.48 16.73 -4.08 -0.07 -18.55 16 8 N -0.68 -12.70 4.86 -448.74 -2.18 -14.88 16 9 C 0.15 3.19 4.07 45.28 0.18 3.38 16 10 H 0.10 2.30 7.54 -2.39 -0.02 2.28 16 11 C -0.14 -3.21 7.68 31.23 0.24 -2.97 16 12 C 0.07 1.66 3.92 45.21 0.18 1.83 16 13 H 0.09 1.69 7.90 -2.39 -0.02 1.67 16 14 N -0.66 -20.17 5.90 -494.09 -2.92 -23.08 16 15 C 0.06 2.18 6.03 85.56 0.52 2.70 16 16 C 0.44 20.75 7.82 87.66 0.69 21.43 16 17 O -0.62 -34.31 15.78 -3.07 -0.05 -34.36 16 18 N -0.57 -29.42 5.29 -306.99 -1.62 -31.04 16 19 C -0.33 -19.06 9.68 84.04 0.81 -18.25 16 20 H 0.08 4.78 7.16 -2.91 -0.02 4.75 16 21 C -0.01 -0.69 5.50 84.93 0.47 -0.22 16 22 N -0.92 -49.65 13.05 21.66 0.28 -49.36 16 23 Si 0.99 42.99 29.55 68.60 2.03 45.02 16 24 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 25 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 26 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 27 C -0.10 -1.92 0.84 -52.32 -0.04 -1.96 16 28 C -0.12 -1.88 7.60 30.88 0.23 -1.64 16 29 C -0.13 -2.15 8.08 31.23 0.25 -1.90 16 30 C -0.11 -2.21 7.38 30.88 0.23 -1.98 16 31 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 32 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.09 0.22 8.14 -2.39 -0.02 0.20 16 34 H 0.13 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.06 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.09 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.05 0.48 8.14 -2.39 -0.02 0.46 16 38 H 0.42 5.69 8.24 -92.71 -0.76 4.92 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.59 16 40 H 0.09 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.35 10.96 6.74 -89.70 -0.60 10.36 16 42 H 0.07 1.96 8.13 -2.39 -0.02 1.94 16 43 H 0.10 3.09 8.14 -2.39 -0.02 3.07 16 44 H 0.40 19.28 7.90 -92.71 -0.73 18.55 16 45 H 0.28 14.04 8.31 -92.70 -0.77 13.27 16 46 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 47 H 0.08 1.04 7.51 -2.39 -0.02 1.02 16 48 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 49 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 50 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 51 H 0.08 1.96 6.75 -2.39 -0.02 1.94 16 Total: -1.00 -73.33 426.66 0.82 -72.51 By element: Atomic # 1 Polarization: 44.43 SS G_CDS: -1.13 Total: 43.29 kcal Atomic # 6 Polarization: 3.97 SS G_CDS: 6.48 Total: 10.46 kcal Atomic # 7 Polarization: -111.93 SS G_CDS: -6.44 Total: -118.37 kcal Atomic # 8 Polarization: -52.79 SS G_CDS: -0.12 Total: -52.91 kcal Atomic # 14 Polarization: 42.99 SS G_CDS: 2.03 Total: 45.02 kcal Total: -73.33 0.82 -72.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202869110.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.114 kcal (2) G-P(sol) polarization free energy of solvation -73.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds