Wall clock time and date at job start Wed Apr 1 2020 04:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.47206 * 109.47168 * 240.00411 * 2 1 3 5 5 C 2.64608 * 109.47189 * 240.00264 * 2 1 3 6 6 C 4.07804 * 109.47046 * 240.00302 * 2 1 3 7 7 O 1.21615 * 119.99477 * 147.48011 * 6 5 4 8 8 N 1.34770 * 120.00553 * 327.47937 * 6 5 4 9 9 C 1.46496 * 120.00383 * 179.97438 * 8 6 5 10 10 H 1.09003 * 112.88235 * 26.84413 * 9 8 6 11 11 C 1.53949 * 113.66801 * 255.49768 * 9 8 6 12 12 C 1.53958 * 87.29502 * 270.26294 * 11 9 8 13 13 H 1.09004 * 113.65841 * 89.73356 * 12 11 9 14 14 N 1.46896 * 113.65867 * 220.78995 * 12 11 9 15 15 C 1.46903 * 111.00005 * 255.49226 * 14 12 11 16 16 C 1.50704 * 109.47019 * 180.02562 * 15 14 12 17 17 O 1.21289 * 120.00104 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99498 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99565 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00258 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00109 * 180.02562 * 19 18 16 22 22 N 1.31415 * 119.99527 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00336 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47247 * 89.99651 * 23 21 19 25 25 H 1.48492 * 109.47185 * 209.99916 * 23 21 19 26 26 H 1.48511 * 109.46842 * 329.99728 * 23 21 19 27 27 C 1.52906 * 113.66523 * 158.30766 * 9 8 6 28 28 C 1.52917 * 121.14036 * 323.85786 * 27 9 8 29 29 C 1.53956 * 86.78022 * 209.37284 * 28 27 9 30 30 C 1.52906 * 121.14441 * 215.29126 * 27 9 8 31 31 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 34 34 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 35 35 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 36 36 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 38 38 H 0.96999 * 119.99865 * 0.02562 * 8 6 5 39 39 H 1.09005 * 113.57643 * 24.86414 * 11 9 8 40 40 H 1.08999 * 113.58291 * 155.57930 * 11 9 8 41 41 H 1.00895 * 111.00234 * 19.44653 * 14 12 11 42 42 H 1.08999 * 109.46937 * 300.00393 * 15 14 12 43 43 H 1.08999 * 109.47093 * 60.00393 * 15 14 12 44 44 H 0.96998 * 120.00608 * 359.97438 * 18 16 15 45 45 H 0.96999 * 119.99549 * 180.02562 * 22 21 19 46 46 H 1.08994 * 113.65780 * 323.84365 * 28 27 9 47 47 H 1.09001 * 113.66239 * 94.90407 * 28 27 9 48 48 H 1.08999 * 113.57633 * 270.12948 * 29 28 27 49 49 H 1.08993 * 113.57625 * 139.33961 * 29 28 27 50 50 H 1.09003 * 113.66496 * 265.10369 * 30 27 9 51 51 H 1.09000 * 113.65962 * 36.15322 * 30 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6938 -1.2020 5 6 2.4120 -1.2473 -2.1606 6 6 2.8893 -1.9222 -3.3298 7 8 3.5501 -1.3186 -4.1531 8 7 2.6061 -3.2264 -3.5179 9 6 3.0939 -3.9167 -4.7144 10 1 4.0041 -3.4732 -5.1182 11 6 2.0040 -4.1627 -5.7735 12 6 1.7255 -5.5034 -5.0699 13 1 0.9779 -5.4356 -4.2795 14 7 1.4796 -6.6159 -5.9971 15 6 0.0502 -6.9508 -6.0503 16 6 -0.1625 -8.0939 -7.0090 17 8 0.7834 -8.5814 -7.5910 18 7 -1.4041 -8.5739 -7.2203 19 6 -1.5976 -9.6142 -8.0920 20 1 -0.7552 -10.0489 -8.6097 21 6 -2.8776 -10.1088 -8.3104 22 7 -3.9026 -9.5796 -7.6808 23 14 -3.1414 -11.5257 -9.4986 24 1 -3.0379 -12.8128 -8.7651 25 1 -4.4888 -11.4128 -10.1123 26 1 -2.1070 -11.4781 -10.5632 27 6 3.1655 -5.4363 -4.5600 28 6 3.5642 -6.0781 -3.2305 29 6 4.1276 -7.2447 -4.0621 30 6 4.2782 -6.2472 -5.2250 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6766 1.9564 -0.8899 38 1 2.0787 -3.7077 -2.8614 39 1 1.1734 -3.4592 -5.7159 40 1 2.3956 -4.2726 -6.7848 41 1 1.8361 -6.4052 -6.9172 42 1 -0.2920 -7.2414 -5.0571 43 1 -0.5141 -6.0820 -6.3893 44 1 -2.1606 -8.1839 -6.7551 45 1 -4.7961 -9.9251 -7.8330 46 1 4.3265 -5.5203 -2.6867 47 1 2.7146 -6.3558 -2.6066 48 1 3.4005 -8.0334 -4.2556 49 1 5.0780 -7.6267 -3.6894 50 1 3.9992 -6.6600 -6.1945 51 1 5.2413 -5.7369 -5.2416 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001202869113.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:58 Heat of formation + Delta-G solvation = 14.717701 kcal Electronic energy + Delta-G solvation = -29564.840490 eV Core-core repulsion = 25466.631918 eV Total energy + Delta-G solvation = -4098.208573 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.22274 -39.32481 -38.15447 -36.85205 -35.61069 -34.64744 -33.82494 -32.67319 -31.62952 -31.16990 -27.73624 -27.05153 -25.84808 -25.18837 -24.61074 -24.12835 -22.79357 -21.97351 -20.70637 -19.38421 -19.23162 -18.13739 -17.77239 -16.74840 -16.39248 -16.07403 -15.58280 -15.45978 -15.25069 -15.09893 -14.79370 -14.63571 -14.41582 -14.03418 -14.02168 -13.71254 -13.13208 -13.00190 -12.78529 -12.61987 -12.53330 -12.37407 -12.20914 -12.09701 -12.00142 -11.94863 -11.61888 -11.56802 -11.45338 -11.07152 -11.04942 -10.88100 -10.65463 -10.48956 -10.40287 -10.35346 -10.27327 -10.20053 -10.02962 -9.51533 -9.22389 -8.45066 -8.02312 -7.95533 -6.42566 -3.83320 1.24982 1.92984 2.72029 3.17358 3.22025 3.26035 3.31860 3.77066 3.90276 4.06341 4.22612 4.27588 4.41698 4.45220 4.53999 4.57728 4.63700 4.73306 4.81829 4.93106 4.96669 5.08027 5.15145 5.25825 5.26167 5.29140 5.32971 5.41054 5.47382 5.49699 5.64463 5.66340 5.66786 5.71069 5.72474 5.80139 5.80659 5.84835 5.96402 6.03269 6.17877 6.24787 6.31652 6.40138 6.56117 6.86751 7.14179 7.23869 7.54498 7.64529 7.83131 8.05647 8.60392 9.17207 9.53649 10.04966 10.75182 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.001921 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.106896 B =14571.591564 C =16009.602462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.007 3.993 3 C -0.148 4.148 4 C -0.072 4.072 5 C -0.226 4.226 6 C 0.636 3.364 7 O -0.523 6.523 8 N -0.694 5.694 9 C 0.133 3.867 10 H 0.105 0.895 11 C -0.180 4.180 12 C 0.094 3.906 13 H 0.097 0.903 14 N -0.651 5.651 15 C 0.050 3.950 16 C 0.441 3.559 17 O -0.583 6.583 18 N -0.564 5.564 19 C -0.299 4.299 20 H 0.103 0.897 21 C 0.022 3.978 22 N -0.902 5.902 23 Si 0.930 3.070 24 H -0.278 1.278 25 H -0.284 1.284 26 H -0.270 1.270 27 C -0.098 4.098 28 C -0.127 4.127 29 C -0.129 4.129 30 C -0.104 4.104 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.103 0.897 35 H 0.070 0.930 36 H 0.062 0.938 37 H 0.062 0.938 38 H 0.405 0.595 39 H 0.071 0.929 40 H 0.095 0.905 41 H 0.353 0.647 42 H 0.084 0.916 43 H 0.043 0.957 44 H 0.392 0.608 45 H 0.271 0.729 46 H 0.077 0.923 47 H 0.066 0.934 48 H 0.092 0.908 49 H 0.059 0.941 50 H 0.083 0.917 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.890 17.973 17.508 26.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.011 4.011 3 C -0.205 4.205 4 C -0.074 4.074 5 C -0.229 4.229 6 C 0.423 3.577 7 O -0.400 6.400 8 N -0.344 5.344 9 C 0.028 3.972 10 H 0.123 0.877 11 C -0.220 4.220 12 C -0.017 4.017 13 H 0.115 0.885 14 N -0.281 5.281 15 C -0.082 4.082 16 C 0.226 3.774 17 O -0.467 6.467 18 N -0.201 5.201 19 C -0.429 4.429 20 H 0.121 0.879 21 C -0.180 4.180 22 N -0.544 5.544 23 Si 0.757 3.243 24 H -0.204 1.204 25 H -0.210 1.210 26 H -0.194 1.194 27 C -0.100 4.100 28 C -0.164 4.164 29 C -0.166 4.166 30 C -0.142 4.142 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.120 0.880 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.081 0.919 38 H 0.239 0.761 39 H 0.090 0.910 40 H 0.114 0.886 41 H 0.174 0.826 42 H 0.103 0.897 43 H 0.061 0.939 44 H 0.225 0.775 45 H 0.081 0.919 46 H 0.096 0.904 47 H 0.085 0.915 48 H 0.111 0.889 49 H 0.078 0.922 50 H 0.102 0.898 51 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 10.931 17.503 16.919 26.685 hybrid contribution -1.441 0.089 -0.447 1.511 sum 9.491 17.593 16.472 25.902 Atomic orbital electron populations 1.21853 0.92551 1.02998 1.03022 1.18542 0.96400 0.95345 0.90789 1.21863 1.01805 0.93890 1.02946 1.22668 0.94300 0.96511 0.93939 1.20679 1.03790 1.02029 0.96369 1.14655 0.79308 0.81400 0.82368 1.90865 1.38765 1.66125 1.44283 1.45426 1.55058 1.09525 1.24376 1.21724 0.98015 0.92337 0.85154 0.87671 1.24198 0.99450 0.99106 0.99257 1.22766 0.94986 0.88124 0.95867 0.88507 1.59924 1.15001 1.38654 1.14566 1.21704 0.89140 0.97112 1.00281 1.19816 0.84000 0.86961 0.86593 1.90524 1.41035 1.62298 1.52835 1.41869 1.06758 1.31556 1.39898 1.19704 0.94211 1.09471 1.19476 0.87920 1.25262 0.95016 0.99223 0.98471 1.69614 0.99571 1.42363 1.42808 0.85855 0.77599 0.80701 0.80124 1.20396 1.20956 1.19423 1.23071 0.96718 0.91613 0.98564 1.22680 1.00652 0.97804 0.95289 1.22726 1.00961 0.96870 0.96042 1.22440 0.95903 0.96214 0.99650 0.91035 0.91806 0.91904 0.87956 0.91122 0.91932 0.91889 0.76055 0.91030 0.88628 0.82642 0.89749 0.93871 0.77502 0.91894 0.90422 0.91550 0.88937 0.92208 0.89829 0.90549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.65 9.15 37.16 0.34 -0.31 16 2 C 0.01 0.04 3.30 -93.41 -0.31 -0.27 16 3 C -0.15 -0.68 9.15 37.16 0.34 -0.34 16 4 C -0.07 -0.62 12.56 -37.12 -0.47 -1.09 16 5 C -0.23 -2.41 13.61 -38.84 -0.53 -2.94 16 6 C 0.64 7.72 7.65 -14.34 -0.11 7.61 16 7 O -0.52 -8.26 16.72 5.26 0.09 -8.17 16 8 N -0.69 -6.75 5.07 -55.81 -0.28 -7.04 16 9 C 0.13 1.39 4.08 -67.49 -0.28 1.12 16 10 H 0.11 1.23 7.54 -51.93 -0.39 0.84 16 11 C -0.18 -1.96 7.52 -25.75 -0.19 -2.15 16 12 C 0.09 1.07 3.96 -67.26 -0.27 0.81 16 13 H 0.10 1.04 7.90 -51.93 -0.41 0.63 16 14 N -0.65 -9.70 5.39 -107.51 -0.58 -10.28 16 15 C 0.05 0.85 6.03 -4.97 -0.03 0.82 16 16 C 0.44 10.17 7.82 -10.98 -0.09 10.09 16 17 O -0.58 -15.49 15.78 5.55 0.09 -15.41 16 18 N -0.56 -14.14 5.29 -10.96 -0.06 -14.20 16 19 C -0.30 -8.30 9.68 -14.93 -0.14 -8.44 16 20 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 21 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 22 N -0.90 -24.44 13.05 55.50 0.72 -23.72 16 23 Si 0.93 21.01 29.55 -169.99 -5.02 15.98 16 24 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 27 C -0.10 -1.01 0.91 -154.71 -0.14 -1.15 16 28 C -0.13 -1.21 7.43 -26.28 -0.20 -1.41 16 29 C -0.13 -1.41 8.08 -25.75 -0.21 -1.62 16 30 C -0.10 -1.14 7.53 -26.29 -0.20 -1.34 16 31 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 35 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 38 H 0.40 3.14 8.51 -40.82 -0.35 2.79 16 39 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.10 1.06 7.83 -51.93 -0.41 0.65 16 41 H 0.35 5.57 7.69 -39.29 -0.30 5.27 16 42 H 0.08 1.31 8.13 -51.93 -0.42 0.89 16 43 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 45 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 46 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 48 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 50 H 0.08 1.05 7.39 -51.93 -0.38 0.67 16 51 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 428.45 15.07 6.46 6.46 Total: -1.00 -32.79 428.45 -9.57 -42.36 By element: Atomic # 1 Polarization: 22.56 SS G_CDS: -8.41 Total: 14.14 kcal Atomic # 6 Polarization: 2.43 SS G_CDS: -2.57 Total: -0.13 kcal Atomic # 7 Polarization: -55.04 SS G_CDS: -0.20 Total: -55.24 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.18 Total: -23.57 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 6.46 Total: 6.46 kcal Total: -32.79 -9.57 -42.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202869113.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.081 kcal (2) G-P(sol) polarization free energy of solvation -32.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.568 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.363 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds