Wall clock time and date at job start Wed Apr 1 2020 04:36:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.47206 * 109.47168 * 240.00411 * 2 1 3 5 5 C 2.64608 * 109.47189 * 240.00264 * 2 1 3 6 6 C 4.07804 * 109.47046 * 240.00302 * 2 1 3 7 7 O 1.21615 * 119.99477 * 147.48011 * 6 5 4 8 8 N 1.34770 * 120.00553 * 327.47937 * 6 5 4 9 9 C 1.46496 * 120.00383 * 179.97438 * 8 6 5 10 10 H 1.09003 * 112.88235 * 26.84413 * 9 8 6 11 11 C 1.53949 * 113.66801 * 255.49768 * 9 8 6 12 12 C 1.53958 * 87.29502 * 270.26294 * 11 9 8 13 13 H 1.09004 * 113.65841 * 89.73356 * 12 11 9 14 14 N 1.46896 * 113.65867 * 220.78995 * 12 11 9 15 15 C 1.46903 * 111.00005 * 255.49226 * 14 12 11 16 16 C 1.50704 * 109.47019 * 180.02562 * 15 14 12 17 17 O 1.21289 * 120.00104 * 359.97438 * 16 15 14 18 18 N 1.34775 * 119.99498 * 180.02562 * 16 15 14 19 19 C 1.37102 * 119.99565 * 180.02562 * 18 16 15 20 20 H 1.08003 * 120.00258 * 359.97438 * 19 18 16 21 21 C 1.38950 * 120.00109 * 180.02562 * 19 18 16 22 22 N 1.31415 * 119.99527 * 359.97438 * 21 19 18 23 23 Si 1.86794 * 120.00336 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.47247 * 89.99651 * 23 21 19 25 25 H 1.48492 * 109.47185 * 209.99916 * 23 21 19 26 26 H 1.48511 * 109.46842 * 329.99728 * 23 21 19 27 27 C 1.52906 * 113.66523 * 158.30766 * 9 8 6 28 28 C 1.52917 * 121.14036 * 323.85786 * 27 9 8 29 29 C 1.53956 * 86.78022 * 209.37284 * 28 27 9 30 30 C 1.52906 * 121.14441 * 215.29126 * 27 9 8 31 31 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 33 33 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 34 34 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 35 35 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 36 36 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 37 37 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 38 38 H 0.96999 * 119.99865 * 0.02562 * 8 6 5 39 39 H 1.09005 * 113.57643 * 24.86414 * 11 9 8 40 40 H 1.08999 * 113.58291 * 155.57930 * 11 9 8 41 41 H 1.00895 * 111.00234 * 19.44653 * 14 12 11 42 42 H 1.08999 * 109.46937 * 300.00393 * 15 14 12 43 43 H 1.08999 * 109.47093 * 60.00393 * 15 14 12 44 44 H 0.96998 * 120.00608 * 359.97438 * 18 16 15 45 45 H 0.96999 * 119.99549 * 180.02562 * 22 21 19 46 46 H 1.08994 * 113.65780 * 323.84365 * 28 27 9 47 47 H 1.09001 * 113.66239 * 94.90407 * 28 27 9 48 48 H 1.08999 * 113.57633 * 270.12948 * 29 28 27 49 49 H 1.08993 * 113.57625 * 139.33961 * 29 28 27 50 50 H 1.09003 * 113.66496 * 265.10369 * 30 27 9 51 51 H 1.09000 * 113.65962 * 36.15322 * 30 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6938 -1.2020 5 6 2.4120 -1.2473 -2.1606 6 6 2.8893 -1.9222 -3.3298 7 8 3.5501 -1.3186 -4.1531 8 7 2.6061 -3.2264 -3.5179 9 6 3.0939 -3.9167 -4.7144 10 1 4.0041 -3.4732 -5.1182 11 6 2.0040 -4.1627 -5.7735 12 6 1.7255 -5.5034 -5.0699 13 1 0.9779 -5.4356 -4.2795 14 7 1.4796 -6.6159 -5.9971 15 6 0.0502 -6.9508 -6.0503 16 6 -0.1625 -8.0939 -7.0090 17 8 0.7834 -8.5814 -7.5910 18 7 -1.4041 -8.5739 -7.2203 19 6 -1.5976 -9.6142 -8.0920 20 1 -0.7552 -10.0489 -8.6097 21 6 -2.8776 -10.1088 -8.3104 22 7 -3.9026 -9.5796 -7.6808 23 14 -3.1414 -11.5257 -9.4986 24 1 -3.0379 -12.8128 -8.7651 25 1 -4.4888 -11.4128 -10.1123 26 1 -2.1070 -11.4781 -10.5632 27 6 3.1655 -5.4363 -4.5600 28 6 3.5642 -6.0781 -3.2305 29 6 4.1276 -7.2447 -4.0621 30 6 4.2782 -6.2472 -5.2250 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3634 0.5139 -0.8900 34 1 1.8934 -0.5138 0.8899 35 1 1.6767 1.9563 0.8900 36 1 3.1300 1.4425 -0.0005 37 1 1.6766 1.9564 -0.8899 38 1 2.0787 -3.7077 -2.8614 39 1 1.1734 -3.4592 -5.7159 40 1 2.3956 -4.2726 -6.7848 41 1 1.8361 -6.4052 -6.9172 42 1 -0.2920 -7.2414 -5.0571 43 1 -0.5141 -6.0820 -6.3893 44 1 -2.1606 -8.1839 -6.7551 45 1 -4.7961 -9.9251 -7.8330 46 1 4.3265 -5.5203 -2.6867 47 1 2.7146 -6.3558 -2.6066 48 1 3.4005 -8.0334 -4.2556 49 1 5.0780 -7.6267 -3.6894 50 1 3.9992 -6.6600 -6.1945 51 1 5.2413 -5.7369 -5.2416 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001202869113.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:36:57 Heat of formation + Delta-G solvation = -7.100431 kcal Electronic energy + Delta-G solvation = -29565.786596 eV Core-core repulsion = 25466.631918 eV Total energy + Delta-G solvation = -4099.154678 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.14595 -40.33516 -39.95363 -37.33627 -36.62351 -36.07306 -35.48413 -33.59597 -33.22002 -32.42301 -28.54364 -28.06579 -26.73119 -26.46183 -25.64127 -25.30731 -23.75028 -22.67204 -21.59332 -21.12669 -20.10640 -19.93120 -18.98102 -17.81912 -17.34434 -17.03727 -16.89388 -16.48811 -16.30404 -16.26626 -15.98251 -15.85138 -15.53675 -15.45652 -15.13356 -14.43998 -14.32008 -14.19793 -13.99660 -13.54213 -13.41801 -13.23344 -13.11527 -13.05321 -13.04175 -12.93650 -12.77704 -12.55401 -12.43340 -12.40327 -12.33407 -12.12632 -11.97578 -11.67809 -11.50227 -11.32712 -11.25920 -11.24455 -11.17632 -10.91834 -10.30612 -10.11126 -10.00663 -9.21623 -8.46476 -5.94905 0.43959 1.20135 1.37969 1.41737 1.54251 1.92020 2.06796 2.29199 2.40080 2.90420 3.11164 3.21028 3.34537 3.45025 3.58943 3.70923 3.86856 3.94534 4.04511 4.06617 4.09659 4.16360 4.31682 4.40710 4.43848 4.51533 4.57211 4.58292 4.62402 4.77842 4.78776 4.84502 4.89377 4.93031 4.93362 4.94680 5.00390 5.11100 5.16768 5.25470 5.32069 5.34559 5.40116 5.41694 5.51395 5.65638 5.93045 6.15040 6.16437 6.32034 6.40507 6.60876 6.97406 7.13372 7.57466 8.12834 8.70899 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.012741 B = 0.001921 C = 0.001749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2197.106896 B =14571.591564 C =16009.602462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.003 3.997 3 C -0.148 4.148 4 C -0.040 4.040 5 C -0.274 4.274 6 C 0.637 3.363 7 O -0.570 6.570 8 N -0.679 5.679 9 C 0.140 3.860 10 H 0.094 0.906 11 C -0.176 4.176 12 C 0.095 3.905 13 H 0.113 0.887 14 N -0.659 5.659 15 C 0.066 3.934 16 C 0.439 3.561 17 O -0.622 6.622 18 N -0.574 5.574 19 C -0.333 4.333 20 H 0.078 0.922 21 C -0.013 4.013 22 N -0.920 5.920 23 Si 0.992 3.008 24 H -0.271 1.271 25 H -0.271 1.271 26 H -0.274 1.274 27 C -0.089 4.089 28 C -0.115 4.115 29 C -0.131 4.131 30 C -0.107 4.107 31 H 0.092 0.908 32 H 0.062 0.938 33 H 0.052 0.948 34 H 0.127 0.873 35 H 0.093 0.907 36 H 0.056 0.944 37 H 0.051 0.949 38 H 0.417 0.583 39 H 0.071 0.929 40 H 0.092 0.908 41 H 0.346 0.654 42 H 0.105 0.895 43 H 0.064 0.936 44 H 0.396 0.604 45 H 0.277 0.723 46 H 0.090 0.910 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.070 0.930 50 H 0.062 0.938 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.210 18.774 19.808 28.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.014 4.014 3 C -0.205 4.205 4 C -0.043 4.043 5 C -0.277 4.277 6 C 0.426 3.574 7 O -0.450 6.450 8 N -0.328 5.328 9 C 0.034 3.966 10 H 0.112 0.888 11 C -0.217 4.217 12 C -0.016 4.016 13 H 0.131 0.869 14 N -0.290 5.290 15 C -0.067 4.067 16 C 0.226 3.774 17 O -0.508 6.508 18 N -0.212 5.212 19 C -0.463 4.463 20 H 0.096 0.904 21 C -0.213 4.213 22 N -0.561 5.561 23 Si 0.816 3.184 24 H -0.196 1.196 25 H -0.196 1.196 26 H -0.198 1.198 27 C -0.091 4.091 28 C -0.152 4.152 29 C -0.168 4.168 30 C -0.144 4.144 31 H 0.111 0.889 32 H 0.081 0.919 33 H 0.071 0.929 34 H 0.145 0.855 35 H 0.112 0.888 36 H 0.076 0.924 37 H 0.070 0.930 38 H 0.254 0.746 39 H 0.090 0.910 40 H 0.110 0.890 41 H 0.166 0.834 42 H 0.123 0.877 43 H 0.082 0.918 44 H 0.230 0.770 45 H 0.087 0.913 46 H 0.109 0.891 47 H 0.093 0.907 48 H 0.086 0.914 49 H 0.089 0.911 50 H 0.081 0.919 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 10.223 18.300 19.265 28.470 hybrid contribution -1.199 -0.109 -1.097 1.629 sum 9.024 18.191 18.168 27.248 Atomic orbital electron populations 1.21867 0.91642 1.03160 1.03613 1.18876 0.97037 0.95545 0.89971 1.21885 1.01520 0.93482 1.03608 1.23475 0.92255 0.94832 0.93716 1.20574 1.05948 1.03956 0.97199 1.14838 0.78550 0.81730 0.82312 1.90833 1.41050 1.67161 1.46003 1.45286 1.54423 1.08896 1.24187 1.21583 0.97474 0.92278 0.85290 0.88789 1.24152 0.99539 0.98709 0.99256 1.22891 0.96077 0.87062 0.95538 0.86908 1.59936 1.13665 1.40600 1.14753 1.21566 0.90774 0.95060 0.99276 1.20905 0.82727 0.87454 0.86297 1.90495 1.42098 1.63818 1.54409 1.41938 1.07677 1.31529 1.40030 1.19660 0.94164 1.11292 1.21150 0.90367 1.26022 0.94344 1.01240 0.99689 1.69671 0.99920 1.43171 1.43381 0.84940 0.77715 0.77804 0.77962 1.19647 1.19584 1.19843 1.22954 0.95777 0.91222 0.99147 1.22649 1.01136 0.96676 0.94748 1.22660 1.00972 0.96662 0.96552 1.22463 0.96793 0.96513 0.98680 0.88905 0.91873 0.92916 0.85546 0.88790 0.92439 0.92960 0.74616 0.91016 0.88998 0.83434 0.87706 0.91839 0.77014 0.91342 0.89122 0.90658 0.91404 0.91116 0.91892 0.89261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.91 9.15 71.98 0.66 -0.25 16 2 C 0.00 0.03 3.30 -12.60 -0.04 -0.01 16 3 C -0.15 -1.04 9.15 71.98 0.66 -0.38 16 4 C -0.04 -0.63 12.56 31.13 0.39 -0.24 16 5 C -0.27 -5.68 13.61 30.01 0.41 -5.27 16 6 C 0.64 15.39 7.65 85.49 0.65 16.05 16 7 O -0.57 -18.41 16.72 -4.08 -0.07 -18.48 16 8 N -0.68 -12.47 5.07 -448.75 -2.27 -14.74 16 9 C 0.14 2.81 4.08 45.28 0.18 2.99 16 10 H 0.09 2.19 7.54 -2.39 -0.02 2.17 16 11 C -0.18 -3.72 7.52 31.23 0.23 -3.48 16 12 C 0.09 2.03 3.96 45.21 0.18 2.21 16 13 H 0.11 2.10 7.90 -2.39 -0.02 2.08 16 14 N -0.66 -19.32 5.39 -494.05 -2.66 -21.99 16 15 C 0.07 2.14 6.03 85.56 0.52 2.66 16 16 C 0.44 20.48 7.82 87.66 0.69 21.17 16 17 O -0.62 -34.00 15.78 -3.06 -0.05 -34.05 16 18 N -0.57 -29.22 5.29 -306.98 -1.62 -30.84 16 19 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16 20 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 21 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 22 N -0.92 -49.51 13.05 21.66 0.28 -49.23 16 23 Si 0.99 42.97 29.55 68.60 2.03 44.99 16 24 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 27 C -0.09 -1.73 0.91 -52.31 -0.05 -1.78 16 28 C -0.11 -1.96 7.43 30.89 0.23 -1.73 16 29 C -0.13 -2.76 8.08 31.23 0.25 -2.51 16 30 C -0.11 -2.29 7.53 30.88 0.23 -2.05 16 31 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16 32 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 33 H 0.05 0.44 8.14 -2.38 -0.02 0.43 16 34 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16 35 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16 36 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16 37 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.42 5.64 8.51 -92.71 -0.79 4.86 16 39 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16 40 H 0.09 2.03 7.83 -2.39 -0.02 2.01 16 41 H 0.35 11.04 7.69 -89.70 -0.69 10.35 16 42 H 0.10 3.04 8.13 -2.39 -0.02 3.02 16 43 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 44 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16 45 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16 46 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 48 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 49 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.06 1.63 7.39 -2.39 -0.02 1.61 16 51 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 Total: -1.00 -72.86 428.45 0.87 -71.99 By element: Atomic # 1 Polarization: 44.53 SS G_CDS: -1.25 Total: 43.29 kcal Atomic # 6 Polarization: 2.57 SS G_CDS: 6.48 Total: 9.04 kcal Atomic # 7 Polarization: -110.52 SS G_CDS: -6.28 Total: -116.80 kcal Atomic # 8 Polarization: -52.41 SS G_CDS: -0.12 Total: -52.52 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal Total: -72.86 0.87 -71.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001202869113.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.894 kcal (2) G-P(sol) polarization free energy of solvation -72.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds