Wall clock time and date at job start Wed Apr 1 2020 04:36:57
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 C 1.52999 * 109.47317 * 2 1
4 4 C 1.47206 * 109.47168 * 240.00411 * 2 1 3
5 5 C 2.64608 * 109.47189 * 240.00264 * 2 1 3
6 6 C 4.07804 * 109.47046 * 240.00302 * 2 1 3
7 7 O 1.21615 * 119.99477 * 147.48011 * 6 5 4
8 8 N 1.34770 * 120.00553 * 327.47937 * 6 5 4
9 9 C 1.46496 * 120.00383 * 179.97438 * 8 6 5
10 10 H 1.09003 * 112.88235 * 26.84413 * 9 8 6
11 11 C 1.53949 * 113.66801 * 255.49768 * 9 8 6
12 12 C 1.53958 * 87.29502 * 270.26294 * 11 9 8
13 13 H 1.09004 * 113.65841 * 89.73356 * 12 11 9
14 14 N 1.46896 * 113.65867 * 220.78995 * 12 11 9
15 15 C 1.46903 * 111.00005 * 255.49226 * 14 12 11
16 16 C 1.50704 * 109.47019 * 180.02562 * 15 14 12
17 17 O 1.21289 * 120.00104 * 359.97438 * 16 15 14
18 18 N 1.34775 * 119.99498 * 180.02562 * 16 15 14
19 19 C 1.37102 * 119.99565 * 180.02562 * 18 16 15
20 20 H 1.08003 * 120.00258 * 359.97438 * 19 18 16
21 21 C 1.38950 * 120.00109 * 180.02562 * 19 18 16
22 22 N 1.31415 * 119.99527 * 359.97438 * 21 19 18
23 23 Si 1.86794 * 120.00336 * 179.97438 * 21 19 18
24 24 H 1.48499 * 109.47247 * 89.99651 * 23 21 19
25 25 H 1.48492 * 109.47185 * 209.99916 * 23 21 19
26 26 H 1.48511 * 109.46842 * 329.99728 * 23 21 19
27 27 C 1.52906 * 113.66523 * 158.30766 * 9 8 6
28 28 C 1.52917 * 121.14036 * 323.85786 * 27 9 8
29 29 C 1.53956 * 86.78022 * 209.37284 * 28 27 9
30 30 C 1.52906 * 121.14441 * 215.29126 * 27 9 8
31 31 H 1.09002 * 109.47153 * 299.99641 * 1 2 3
32 32 H 1.09001 * 109.46832 * 179.97438 * 1 2 3
33 33 H 1.09004 * 109.47261 * 59.99813 * 1 2 3
34 34 H 1.08996 * 109.47853 * 120.00331 * 2 1 3
35 35 H 1.09002 * 109.46716 * 60.00091 * 3 2 1
36 36 H 1.09000 * 109.47486 * 180.02562 * 3 2 1
37 37 H 1.09001 * 109.47362 * 300.00732 * 3 2 1
38 38 H 0.96999 * 119.99865 * 0.02562 * 8 6 5
39 39 H 1.09005 * 113.57643 * 24.86414 * 11 9 8
40 40 H 1.08999 * 113.58291 * 155.57930 * 11 9 8
41 41 H 1.00895 * 111.00234 * 19.44653 * 14 12 11
42 42 H 1.08999 * 109.46937 * 300.00393 * 15 14 12
43 43 H 1.08999 * 109.47093 * 60.00393 * 15 14 12
44 44 H 0.96998 * 120.00608 * 359.97438 * 18 16 15
45 45 H 0.96999 * 119.99549 * 180.02562 * 22 21 19
46 46 H 1.08994 * 113.65780 * 323.84365 * 28 27 9
47 47 H 1.09001 * 113.66239 * 94.90407 * 28 27 9
48 48 H 1.08999 * 113.57633 * 270.12948 * 29 28 27
49 49 H 1.08993 * 113.57625 * 139.33961 * 29 28 27
50 50 H 1.09003 * 113.66496 * 265.10369 * 30 27 9
51 51 H 1.09000 * 113.65962 * 36.15322 * 30 27 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 6 2.0207 -0.6938 -1.2020
5 6 2.4120 -1.2473 -2.1606
6 6 2.8893 -1.9222 -3.3298
7 8 3.5501 -1.3186 -4.1531
8 7 2.6061 -3.2264 -3.5179
9 6 3.0939 -3.9167 -4.7144
10 1 4.0041 -3.4732 -5.1182
11 6 2.0040 -4.1627 -5.7735
12 6 1.7255 -5.5034 -5.0699
13 1 0.9779 -5.4356 -4.2795
14 7 1.4796 -6.6159 -5.9971
15 6 0.0502 -6.9508 -6.0503
16 6 -0.1625 -8.0939 -7.0090
17 8 0.7834 -8.5814 -7.5910
18 7 -1.4041 -8.5739 -7.2203
19 6 -1.5976 -9.6142 -8.0920
20 1 -0.7552 -10.0489 -8.6097
21 6 -2.8776 -10.1088 -8.3104
22 7 -3.9026 -9.5796 -7.6808
23 14 -3.1414 -11.5257 -9.4986
24 1 -3.0379 -12.8128 -8.7651
25 1 -4.4888 -11.4128 -10.1123
26 1 -2.1070 -11.4781 -10.5632
27 6 3.1655 -5.4363 -4.5600
28 6 3.5642 -6.0781 -3.2305
29 6 4.1276 -7.2447 -4.0621
30 6 4.2782 -6.2472 -5.2250
31 1 -0.3633 0.5138 0.8900
32 1 -0.3633 -1.0277 -0.0005
33 1 -0.3634 0.5139 -0.8900
34 1 1.8934 -0.5138 0.8899
35 1 1.6767 1.9563 0.8900
36 1 3.1300 1.4425 -0.0005
37 1 1.6766 1.9564 -0.8899
38 1 2.0787 -3.7077 -2.8614
39 1 1.1734 -3.4592 -5.7159
40 1 2.3956 -4.2726 -6.7848
41 1 1.8361 -6.4052 -6.9172
42 1 -0.2920 -7.2414 -5.0571
43 1 -0.5141 -6.0820 -6.3893
44 1 -2.1606 -8.1839 -6.7551
45 1 -4.7961 -9.9251 -7.8330
46 1 4.3265 -5.5203 -2.6867
47 1 2.7146 -6.3558 -2.6066
48 1 3.4005 -8.0334 -4.2556
49 1 5.0780 -7.6267 -3.6894
50 1 3.9992 -6.6600 -6.1945
51 1 5.2413 -5.7369 -5.2416
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001202869113.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:36:57
Heat of formation + Delta-G solvation = -7.100431 kcal
Electronic energy + Delta-G solvation = -29565.786596 eV
Core-core repulsion = 25466.631918 eV
Total energy + Delta-G solvation = -4099.154678 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.200 amu
Computer time = 0.99 seconds
Orbital eigenvalues (eV)
-42.14595 -40.33516 -39.95363 -37.33627 -36.62351 -36.07306 -35.48413 -33.59597
-33.22002 -32.42301 -28.54364 -28.06579 -26.73119 -26.46183 -25.64127 -25.30731
-23.75028 -22.67204 -21.59332 -21.12669 -20.10640 -19.93120 -18.98102 -17.81912
-17.34434 -17.03727 -16.89388 -16.48811 -16.30404 -16.26626 -15.98251 -15.85138
-15.53675 -15.45652 -15.13356 -14.43998 -14.32008 -14.19793 -13.99660 -13.54213
-13.41801 -13.23344 -13.11527 -13.05321 -13.04175 -12.93650 -12.77704 -12.55401
-12.43340 -12.40327 -12.33407 -12.12632 -11.97578 -11.67809 -11.50227 -11.32712
-11.25920 -11.24455 -11.17632 -10.91834 -10.30612 -10.11126 -10.00663 -9.21623
-8.46476 -5.94905 0.43959 1.20135 1.37969 1.41737 1.54251 1.92020
2.06796 2.29199 2.40080 2.90420 3.11164 3.21028 3.34537 3.45025
3.58943 3.70923 3.86856 3.94534 4.04511 4.06617 4.09659 4.16360
4.31682 4.40710 4.43848 4.51533 4.57211 4.58292 4.62402 4.77842
4.78776 4.84502 4.89377 4.93031 4.93362 4.94680 5.00390 5.11100
5.16768 5.25470 5.32069 5.34559 5.40116 5.41694 5.51395 5.65638
5.93045 6.15040 6.16437 6.32034 6.40507 6.60876 6.97406 7.13372
7.57466 8.12834 8.70899
Molecular weight = 347.20amu
Principal moments of inertia in cm(-1)
A = 0.012741 B = 0.001921 C = 0.001749
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2197.106896 B =14571.591564 C =16009.602462
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.146 4.146
2 C 0.003 3.997
3 C -0.148 4.148
4 C -0.040 4.040
5 C -0.274 4.274
6 C 0.637 3.363
7 O -0.570 6.570
8 N -0.679 5.679
9 C 0.140 3.860
10 H 0.094 0.906
11 C -0.176 4.176
12 C 0.095 3.905
13 H 0.113 0.887
14 N -0.659 5.659
15 C 0.066 3.934
16 C 0.439 3.561
17 O -0.622 6.622
18 N -0.574 5.574
19 C -0.333 4.333
20 H 0.078 0.922
21 C -0.013 4.013
22 N -0.920 5.920
23 Si 0.992 3.008
24 H -0.271 1.271
25 H -0.271 1.271
26 H -0.274 1.274
27 C -0.089 4.089
28 C -0.115 4.115
29 C -0.131 4.131
30 C -0.107 4.107
31 H 0.092 0.908
32 H 0.062 0.938
33 H 0.052 0.948
34 H 0.127 0.873
35 H 0.093 0.907
36 H 0.056 0.944
37 H 0.051 0.949
38 H 0.417 0.583
39 H 0.071 0.929
40 H 0.092 0.908
41 H 0.346 0.654
42 H 0.105 0.895
43 H 0.064 0.936
44 H 0.396 0.604
45 H 0.277 0.723
46 H 0.090 0.910
47 H 0.075 0.925
48 H 0.067 0.933
49 H 0.070 0.930
50 H 0.062 0.938
51 H 0.089 0.911
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.210 18.774 19.808 28.804
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.014 4.014
3 C -0.205 4.205
4 C -0.043 4.043
5 C -0.277 4.277
6 C 0.426 3.574
7 O -0.450 6.450
8 N -0.328 5.328
9 C 0.034 3.966
10 H 0.112 0.888
11 C -0.217 4.217
12 C -0.016 4.016
13 H 0.131 0.869
14 N -0.290 5.290
15 C -0.067 4.067
16 C 0.226 3.774
17 O -0.508 6.508
18 N -0.212 5.212
19 C -0.463 4.463
20 H 0.096 0.904
21 C -0.213 4.213
22 N -0.561 5.561
23 Si 0.816 3.184
24 H -0.196 1.196
25 H -0.196 1.196
26 H -0.198 1.198
27 C -0.091 4.091
28 C -0.152 4.152
29 C -0.168 4.168
30 C -0.144 4.144
31 H 0.111 0.889
32 H 0.081 0.919
33 H 0.071 0.929
34 H 0.145 0.855
35 H 0.112 0.888
36 H 0.076 0.924
37 H 0.070 0.930
38 H 0.254 0.746
39 H 0.090 0.910
40 H 0.110 0.890
41 H 0.166 0.834
42 H 0.123 0.877
43 H 0.082 0.918
44 H 0.230 0.770
45 H 0.087 0.913
46 H 0.109 0.891
47 H 0.093 0.907
48 H 0.086 0.914
49 H 0.089 0.911
50 H 0.081 0.919
51 H 0.107 0.893
Dipole moment (debyes) X Y Z Total
from point charges 10.223 18.300 19.265 28.470
hybrid contribution -1.199 -0.109 -1.097 1.629
sum 9.024 18.191 18.168 27.248
Atomic orbital electron populations
1.21867 0.91642 1.03160 1.03613 1.18876 0.97037 0.95545 0.89971
1.21885 1.01520 0.93482 1.03608 1.23475 0.92255 0.94832 0.93716
1.20574 1.05948 1.03956 0.97199 1.14838 0.78550 0.81730 0.82312
1.90833 1.41050 1.67161 1.46003 1.45286 1.54423 1.08896 1.24187
1.21583 0.97474 0.92278 0.85290 0.88789 1.24152 0.99539 0.98709
0.99256 1.22891 0.96077 0.87062 0.95538 0.86908 1.59936 1.13665
1.40600 1.14753 1.21566 0.90774 0.95060 0.99276 1.20905 0.82727
0.87454 0.86297 1.90495 1.42098 1.63818 1.54409 1.41938 1.07677
1.31529 1.40030 1.19660 0.94164 1.11292 1.21150 0.90367 1.26022
0.94344 1.01240 0.99689 1.69671 0.99920 1.43171 1.43381 0.84940
0.77715 0.77804 0.77962 1.19647 1.19584 1.19843 1.22954 0.95777
0.91222 0.99147 1.22649 1.01136 0.96676 0.94748 1.22660 1.00972
0.96662 0.96552 1.22463 0.96793 0.96513 0.98680 0.88905 0.91873
0.92916 0.85546 0.88790 0.92439 0.92960 0.74616 0.91016 0.88998
0.83434 0.87706 0.91839 0.77014 0.91342 0.89122 0.90658 0.91404
0.91116 0.91892 0.89261
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.91 9.15 71.98 0.66 -0.25 16
2 C 0.00 0.03 3.30 -12.60 -0.04 -0.01 16
3 C -0.15 -1.04 9.15 71.98 0.66 -0.38 16
4 C -0.04 -0.63 12.56 31.13 0.39 -0.24 16
5 C -0.27 -5.68 13.61 30.01 0.41 -5.27 16
6 C 0.64 15.39 7.65 85.49 0.65 16.05 16
7 O -0.57 -18.41 16.72 -4.08 -0.07 -18.48 16
8 N -0.68 -12.47 5.07 -448.75 -2.27 -14.74 16
9 C 0.14 2.81 4.08 45.28 0.18 2.99 16
10 H 0.09 2.19 7.54 -2.39 -0.02 2.17 16
11 C -0.18 -3.72 7.52 31.23 0.23 -3.48 16
12 C 0.09 2.03 3.96 45.21 0.18 2.21 16
13 H 0.11 2.10 7.90 -2.39 -0.02 2.08 16
14 N -0.66 -19.32 5.39 -494.05 -2.66 -21.99 16
15 C 0.07 2.14 6.03 85.56 0.52 2.66 16
16 C 0.44 20.48 7.82 87.66 0.69 21.17 16
17 O -0.62 -34.00 15.78 -3.06 -0.05 -34.05 16
18 N -0.57 -29.22 5.29 -306.98 -1.62 -30.84 16
19 C -0.33 -18.89 9.68 84.04 0.81 -18.08 16
20 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16
21 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16
22 N -0.92 -49.51 13.05 21.66 0.28 -49.23 16
23 Si 0.99 42.97 29.55 68.60 2.03 44.99 16
24 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16
25 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16
26 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16
27 C -0.09 -1.73 0.91 -52.31 -0.05 -1.78 16
28 C -0.11 -1.96 7.43 30.89 0.23 -1.73 16
29 C -0.13 -2.76 8.08 31.23 0.25 -2.51 16
30 C -0.11 -2.29 7.53 30.88 0.23 -2.05 16
31 H 0.09 0.21 8.14 -2.39 -0.02 0.19 16
32 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16
33 H 0.05 0.44 8.14 -2.38 -0.02 0.43 16
34 H 0.13 0.48 8.14 -2.39 -0.02 0.46 16
35 H 0.09 0.24 8.14 -2.39 -0.02 0.22 16
36 H 0.06 0.47 8.14 -2.39 -0.02 0.45 16
37 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16
38 H 0.42 5.64 8.51 -92.71 -0.79 4.86 16
39 H 0.07 1.53 8.14 -2.38 -0.02 1.51 16
40 H 0.09 2.03 7.83 -2.39 -0.02 2.01 16
41 H 0.35 11.04 7.69 -89.70 -0.69 10.35 16
42 H 0.10 3.04 8.13 -2.39 -0.02 3.02 16
43 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16
44 H 0.40 19.10 7.90 -92.71 -0.73 18.37 16
45 H 0.28 13.96 8.31 -92.71 -0.77 13.19 16
46 H 0.09 1.37 8.14 -2.39 -0.02 1.35 16
47 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16
48 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16
49 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16
50 H 0.06 1.63 7.39 -2.39 -0.02 1.61 16
51 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16
Total: -1.00 -72.86 428.45 0.87 -71.99
By element:
Atomic # 1 Polarization: 44.53 SS G_CDS: -1.25 Total: 43.29 kcal
Atomic # 6 Polarization: 2.57 SS G_CDS: 6.48 Total: 9.04 kcal
Atomic # 7 Polarization: -110.52 SS G_CDS: -6.28 Total: -116.80 kcal
Atomic # 8 Polarization: -52.41 SS G_CDS: -0.12 Total: -52.52 kcal
Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 44.99 kcal
Total: -72.86 0.87 -71.99 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001202869113.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 64.894 kcal
(2) G-P(sol) polarization free energy of solvation -72.860 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.966 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.865 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.995 kcal
(6) G-S(sol) free energy of system = (1) + (5) -7.100 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.99 seconds