Wall clock time and date at job start Wed Apr 1 2020 05:23:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99878 * 2 1 4 4 H 1.09001 * 110.63899 * 26.85985 * 3 2 1 5 5 C 1.54320 * 110.72298 * 263.52609 * 3 2 1 6 6 N 1.47025 * 107.27171 * 219.44532 * 5 3 2 7 7 C 1.36936 * 125.65238 * 178.95780 * 6 5 3 8 8 H 1.07998 * 120.00446 * 179.97438 * 7 6 5 9 9 C 1.38816 * 119.99507 * 359.97438 * 7 6 5 10 10 N 1.31621 * 120.00312 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99723 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47194 * 90.00101 * 11 9 7 13 13 H 1.48504 * 109.46922 * 209.99980 * 11 9 7 14 14 H 1.48502 * 109.47231 * 329.99843 * 11 9 7 15 15 C 1.47430 * 108.70093 * 358.93673 * 6 5 3 16 16 C 1.54914 * 104.83331 * 24.13086 * 15 6 5 17 17 H 1.08998 * 111.03443 * 81.07808 * 16 15 6 18 18 N 1.46490 * 111.00343 * 204.91661 * 16 15 6 19 19 C 1.34777 * 119.99916 * 267.19670 * 18 16 15 20 20 O 1.21280 * 119.99946 * 356.42563 * 19 18 16 21 21 C 1.50703 * 120.00126 * 176.43174 * 19 18 16 22 22 H 1.08996 * 109.47332 * 46.77441 * 21 19 18 23 23 C 1.50695 * 109.47437 * 166.77929 * 21 19 18 24 24 C 1.38650 * 120.79134 * 59.71534 * 23 21 19 25 25 C 1.38205 * 119.16399 * 179.75914 * 24 23 21 26 26 N 1.31866 * 120.76193 * 0.52898 * 25 24 23 27 27 C 1.31872 * 121.73013 * 359.74568 * 26 25 24 28 28 C 1.38205 * 120.75882 * 359.97438 * 27 26 25 29 29 C 1.53003 * 109.46860 * 286.77764 * 21 19 18 30 30 C 1.52999 * 109.47241 * 65.58297 * 29 21 19 31 31 C 1.52994 * 109.47311 * 185.58257 * 29 21 19 32 32 H 1.08996 * 109.47358 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47480 * 299.99766 * 1 2 3 34 34 H 1.09001 * 109.47222 * 59.99675 * 1 2 3 35 35 H 1.08999 * 109.88077 * 338.86009 * 5 3 2 36 36 H 1.08996 * 109.88595 * 99.86904 * 5 3 2 37 37 H 0.96993 * 119.99834 * 180.02562 * 10 9 7 38 38 H 1.08994 * 110.36539 * 265.28806 * 15 6 5 39 39 H 1.08999 * 110.36578 * 142.96687 * 15 6 5 40 40 H 0.97002 * 120.00157 * 87.19201 * 18 16 15 41 41 H 1.08006 * 120.41700 * 0.02562 * 24 23 21 42 42 H 1.08004 * 119.62103 * 180.29418 * 25 24 23 43 43 H 1.07996 * 119.61720 * 179.97438 * 27 26 25 44 44 H 1.08000 * 120.41849 * 180.02562 * 28 27 26 45 45 H 1.08997 * 109.46976 * 305.58410 * 29 21 19 46 46 H 1.08998 * 109.47731 * 187.33069 * 30 29 21 47 47 H 1.08999 * 109.47203 * 67.32198 * 30 29 21 48 48 H 1.09005 * 109.46885 * 307.32805 * 30 29 21 49 49 H 1.09007 * 109.47293 * 299.99998 * 31 29 21 50 50 H 1.08999 * 109.47215 * 59.99856 * 31 29 21 51 51 H 1.09002 * 109.47434 * 180.02562 * 31 29 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3351 2.0266 0.4609 5 6 2.3810 1.7381 -1.4342 6 7 3.6684 2.4440 -1.3581 7 6 4.3541 2.9703 -2.4201 8 1 5.2963 3.4730 -2.2591 9 6 3.8381 2.8576 -3.7039 10 7 2.6901 2.2445 -3.9003 11 14 4.7738 3.5748 -5.1528 12 1 5.6976 2.5499 -5.7018 13 1 3.8127 3.9900 -6.2061 14 1 5.5549 4.7549 -4.7025 15 6 4.0987 2.4919 0.0512 16 6 3.3816 1.2958 0.7257 17 1 3.9155 0.3640 0.5395 18 7 3.2167 1.5251 2.1631 19 6 4.1463 1.0739 3.0285 20 8 5.0857 0.4221 2.6240 21 6 4.0183 1.3791 4.4987 22 1 2.9976 1.1782 4.8240 23 6 4.9736 0.5116 5.2769 24 6 6.3391 0.5742 5.0449 25 6 7.1851 -0.2331 5.7815 26 7 6.7063 -1.0624 6.6880 27 6 5.4134 -1.1526 6.9314 28 6 4.5075 -0.3725 6.2379 29 6 4.3512 2.8521 4.7446 30 6 3.2987 3.7327 4.0682 31 6 4.3574 3.1293 6.2492 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 2.4767 0.8603 -2.0731 36 1 1.6138 2.4031 -1.8308 37 1 2.3298 2.1655 -4.7974 38 1 3.7871 3.4295 0.5113 39 1 5.1801 2.3746 0.1219 40 1 2.4386 2.0018 2.4921 41 1 6.7370 1.2484 4.3008 42 1 8.2505 -0.1868 5.6102 43 1 5.0584 -1.8440 7.6813 44 1 3.4498 -0.4505 6.4420 45 1 5.3338 3.0766 4.3297 46 1 3.6039 4.7772 4.1310 47 1 2.3398 3.6034 4.5701 48 1 3.2025 3.4447 3.0212 49 1 3.3747 2.9048 6.6641 50 1 5.1072 2.5020 6.7312 51 1 4.5941 4.1788 6.4244 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213331250.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:12 Heat of formation + Delta-G solvation = -16.346916 kcal Electronic energy + Delta-G solvation = -31772.467819 eV Core-core repulsion = 27672.912183 eV Total energy + Delta-G solvation = -4099.555635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.94835 -39.58858 -38.27239 -36.44751 -35.93529 -34.22025 -32.56373 -31.78869 -31.26013 -29.10076 -28.24184 -27.37818 -26.83194 -26.14691 -24.27263 -23.64752 -22.72338 -21.35906 -20.63140 -20.21902 -19.88385 -17.64078 -17.23021 -16.75994 -16.42611 -16.05963 -15.72227 -15.51243 -15.19350 -14.94153 -14.61572 -14.41460 -14.25664 -14.12500 -13.74355 -13.64016 -13.47721 -13.23589 -12.95623 -12.91713 -12.54076 -12.38244 -12.22063 -11.93049 -11.81278 -11.69565 -11.43718 -11.25444 -11.19075 -11.04440 -10.98861 -10.82712 -10.76856 -10.18312 -10.05805 -9.90513 -9.81836 -9.57916 -9.50319 -9.19311 -9.14126 -8.78083 -8.59775 -6.92559 -5.76438 -3.11726 1.06523 1.14543 2.67224 3.18586 3.38798 3.43800 3.45279 3.76585 4.09775 4.18317 4.37012 4.39332 4.49213 4.56771 4.77416 4.82283 4.95345 5.03992 5.06043 5.11230 5.16559 5.33103 5.34396 5.37128 5.44952 5.51226 5.53006 5.57273 5.59733 5.63919 5.67505 5.71449 5.80422 5.81895 5.88253 5.88864 5.97103 5.98390 6.05149 6.11587 6.25032 6.45950 6.55749 6.61514 6.79733 7.21605 7.44269 7.58753 7.67858 7.83104 7.88621 8.16674 8.31099 9.14130 9.74315 10.37030 11.34883 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013514 B = 0.002799 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.479715 B =10000.285606 C =10518.895622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.062 0.938 5 C 0.165 3.835 6 N -0.599 5.599 7 C -0.230 4.230 8 H 0.081 0.919 9 C -0.006 4.006 10 N -0.922 5.922 11 Si 0.914 3.086 12 H -0.288 1.288 13 H -0.290 1.290 14 H -0.281 1.281 15 C 0.132 3.868 16 C 0.129 3.871 17 H 0.107 0.893 18 N -0.713 5.713 19 C 0.520 3.480 20 O -0.527 6.527 21 C -0.067 4.067 22 H 0.103 0.897 23 C -0.018 4.018 24 C -0.131 4.131 25 C 0.093 3.907 26 N -0.488 5.488 27 C 0.091 3.909 28 C -0.168 4.168 29 C -0.081 4.081 30 C -0.167 4.167 31 C -0.144 4.144 32 H 0.079 0.921 33 H 0.033 0.967 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.048 0.952 37 H 0.253 0.747 38 H 0.023 0.977 39 H 0.049 0.951 40 H 0.397 0.603 41 H 0.135 0.865 42 H 0.154 0.846 43 H 0.153 0.847 44 H 0.132 0.868 45 H 0.080 0.920 46 H 0.064 0.936 47 H 0.059 0.941 48 H 0.071 0.929 49 H 0.057 0.943 50 H 0.056 0.944 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.944 -0.060 22.009 22.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.080 0.920 5 C 0.040 3.960 6 N -0.327 5.327 7 C -0.358 4.358 8 H 0.098 0.902 9 C -0.203 4.203 10 N -0.569 5.569 11 Si 0.745 3.255 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.206 1.206 15 C 0.005 3.995 16 C 0.024 3.976 17 H 0.125 0.875 18 N -0.365 5.365 19 C 0.305 3.695 20 O -0.403 6.403 21 C -0.089 4.089 22 H 0.121 0.879 23 C -0.027 4.027 24 C -0.151 4.151 25 C -0.063 4.063 26 N -0.197 5.197 27 C -0.066 4.066 28 C -0.187 4.187 29 C -0.099 4.099 30 C -0.225 4.225 31 C -0.202 4.202 32 H 0.098 0.902 33 H 0.051 0.949 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.067 0.933 37 H 0.064 0.936 38 H 0.040 0.960 39 H 0.067 0.933 40 H 0.233 0.767 41 H 0.153 0.847 42 H 0.171 0.829 43 H 0.170 0.830 44 H 0.149 0.851 45 H 0.098 0.902 46 H 0.083 0.917 47 H 0.078 0.922 48 H 0.090 0.910 49 H 0.076 0.924 50 H 0.075 0.925 51 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -1.605 -1.208 21.928 22.020 hybrid contribution -0.922 1.282 -1.246 2.011 sum -2.526 0.074 20.683 20.837 Atomic orbital electron populations 1.22708 0.81758 1.02077 0.99708 1.87921 1.19058 1.27561 1.95033 1.23853 0.92923 0.84056 0.99514 0.92023 1.21550 0.88232 0.97280 0.88978 1.44243 1.21370 1.66466 1.00634 1.19065 1.02367 1.29645 0.84696 0.90150 1.24821 0.97392 1.00646 0.97415 1.69935 1.19179 1.47137 1.20648 0.86083 0.78643 0.78595 0.82216 1.21464 1.21654 1.20630 1.21812 0.97673 0.93729 0.86326 1.22451 0.96496 1.01180 0.77468 0.87464 1.46190 1.24926 1.58246 1.07173 1.20211 0.82717 0.79102 0.87462 1.90743 1.32023 1.38295 1.79204 1.20476 1.00097 0.96065 0.92233 0.87912 1.19660 0.94033 0.94743 0.94270 1.21993 0.93416 1.00458 0.99210 1.22731 1.00416 0.91613 0.91538 1.67633 1.15871 1.19312 1.16887 1.22647 0.88591 0.97229 0.98087 1.21991 1.01218 0.97648 0.97882 1.21041 1.00771 0.90984 0.97154 1.22192 0.98409 1.00176 1.01697 1.21847 1.02111 1.01814 0.94403 0.90236 0.94887 0.93627 0.91952 0.93350 0.93633 0.95968 0.93297 0.76673 0.84694 0.82864 0.82998 0.85055 0.90170 0.91654 0.92204 0.91032 0.92412 0.92483 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 10.85 101.05 1.10 1.57 16 2 O -0.38 -6.85 10.43 -35.23 -0.37 -7.22 16 3 C 0.06 1.02 3.09 -24.90 -0.08 0.94 16 4 H 0.06 0.98 7.68 -51.93 -0.40 0.58 16 5 C 0.17 3.94 5.15 -3.06 -0.02 3.92 16 6 N -0.60 -15.10 3.39 -170.07 -0.58 -15.68 16 7 C -0.23 -6.35 10.28 -15.06 -0.15 -6.50 16 8 H 0.08 2.15 7.83 -52.49 -0.41 1.74 16 9 C -0.01 -0.18 5.49 -17.43 -0.10 -0.27 16 10 N -0.92 -26.71 10.31 55.49 0.57 -26.13 16 11 Si 0.91 21.97 29.55 -169.99 -5.02 16.95 16 12 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 13 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 14 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 15 C 0.13 2.71 6.93 -2.52 -0.02 2.69 16 16 C 0.13 2.34 3.18 -65.78 -0.21 2.13 16 17 H 0.11 2.28 7.49 -51.93 -0.39 1.89 16 18 N -0.71 -9.73 3.95 -51.73 -0.20 -9.94 16 19 C 0.52 7.28 6.79 -10.98 -0.07 7.20 16 20 O -0.53 -9.58 14.37 5.56 0.08 -9.50 16 21 C -0.07 -0.67 2.02 -92.92 -0.19 -0.86 16 22 H 0.10 0.81 7.95 -51.93 -0.41 0.40 16 23 C -0.02 -0.20 3.03 -104.32 -0.32 -0.52 16 24 C -0.13 -1.55 7.99 -39.44 -0.32 -1.87 16 25 C 0.09 1.08 11.18 -17.55 -0.20 0.89 16 26 N -0.49 -5.98 10.36 -13.25 -0.14 -6.12 16 27 C 0.09 0.94 11.18 -17.55 -0.20 0.74 16 28 C -0.17 -1.62 9.76 -39.44 -0.39 -2.01 16 29 C -0.08 -0.69 2.26 -90.62 -0.20 -0.89 16 30 C -0.17 -1.33 8.70 37.16 0.32 -1.00 16 31 C -0.14 -1.04 8.86 37.15 0.33 -0.71 16 32 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 33 H 0.03 0.37 8.11 -51.93 -0.42 -0.05 16 34 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 1.71 7.29 -51.93 -0.38 1.33 16 36 H 0.05 1.25 7.51 -51.93 -0.39 0.86 16 37 H 0.25 7.14 8.31 -40.82 -0.34 6.80 16 38 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 40 H 0.40 4.26 6.69 -40.82 -0.27 3.99 16 41 H 0.14 1.62 7.41 -52.48 -0.39 1.23 16 42 H 0.15 1.43 8.06 -52.48 -0.42 1.01 16 43 H 0.15 1.13 8.06 -52.49 -0.42 0.71 16 44 H 0.13 0.93 8.01 -52.49 -0.42 0.51 16 45 H 0.08 0.78 7.70 -51.93 -0.40 0.38 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.68 4.92 -51.93 -0.26 0.42 16 49 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 50 H 0.06 0.46 7.03 -51.93 -0.36 0.10 16 51 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 LS Contribution 405.60 15.07 6.11 6.11 Total: -1.00 -33.65 405.60 -8.51 -42.16 By element: Atomic # 1 Polarization: 12.18 SS G_CDS: -8.27 Total: 3.92 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: -0.70 Total: 5.45 kcal Atomic # 7 Polarization: -57.52 SS G_CDS: -0.35 Total: -57.87 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.29 Total: -16.72 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -33.65 -8.51 -42.16 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213331250.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.815 kcal (2) G-P(sol) polarization free energy of solvation -33.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds