Wall clock time and date at job start Wed Apr 1 2020 05:23:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.42901 * 113.99878 * 2 1 4 4 H 1.09001 * 110.63899 * 26.85985 * 3 2 1 5 5 C 1.54320 * 110.72298 * 263.52609 * 3 2 1 6 6 N 1.47025 * 107.27171 * 219.44532 * 5 3 2 7 7 C 1.36936 * 125.65238 * 178.95780 * 6 5 3 8 8 H 1.07998 * 120.00446 * 179.97438 * 7 6 5 9 9 C 1.38816 * 119.99507 * 359.97438 * 7 6 5 10 10 N 1.31621 * 120.00312 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 119.99723 * 180.02562 * 9 7 6 12 12 H 1.48501 * 109.47194 * 90.00101 * 11 9 7 13 13 H 1.48504 * 109.46922 * 209.99980 * 11 9 7 14 14 H 1.48502 * 109.47231 * 329.99843 * 11 9 7 15 15 C 1.47430 * 108.70093 * 358.93673 * 6 5 3 16 16 C 1.54914 * 104.83331 * 24.13086 * 15 6 5 17 17 H 1.08998 * 111.03443 * 81.07808 * 16 15 6 18 18 N 1.46490 * 111.00343 * 204.91661 * 16 15 6 19 19 C 1.34777 * 119.99916 * 267.19670 * 18 16 15 20 20 O 1.21280 * 119.99946 * 356.42563 * 19 18 16 21 21 C 1.50703 * 120.00126 * 176.43174 * 19 18 16 22 22 H 1.08996 * 109.47332 * 46.77441 * 21 19 18 23 23 C 1.50695 * 109.47437 * 166.77929 * 21 19 18 24 24 C 1.38650 * 120.79134 * 59.71534 * 23 21 19 25 25 C 1.38205 * 119.16399 * 179.75914 * 24 23 21 26 26 N 1.31866 * 120.76193 * 0.52898 * 25 24 23 27 27 C 1.31872 * 121.73013 * 359.74568 * 26 25 24 28 28 C 1.38205 * 120.75882 * 359.97438 * 27 26 25 29 29 C 1.53003 * 109.46860 * 286.77764 * 21 19 18 30 30 C 1.52999 * 109.47241 * 65.58297 * 29 21 19 31 31 C 1.52994 * 109.47311 * 185.58257 * 29 21 19 32 32 H 1.08996 * 109.47358 * 179.97438 * 1 2 3 33 33 H 1.08998 * 109.47480 * 299.99766 * 1 2 3 34 34 H 1.09001 * 109.47222 * 59.99675 * 1 2 3 35 35 H 1.08999 * 109.88077 * 338.86009 * 5 3 2 36 36 H 1.08996 * 109.88595 * 99.86904 * 5 3 2 37 37 H 0.96993 * 119.99834 * 180.02562 * 10 9 7 38 38 H 1.08994 * 110.36539 * 265.28806 * 15 6 5 39 39 H 1.08999 * 110.36578 * 142.96687 * 15 6 5 40 40 H 0.97002 * 120.00157 * 87.19201 * 18 16 15 41 41 H 1.08006 * 120.41700 * 0.02562 * 24 23 21 42 42 H 1.08004 * 119.62103 * 180.29418 * 25 24 23 43 43 H 1.07996 * 119.61720 * 179.97438 * 27 26 25 44 44 H 1.08000 * 120.41849 * 180.02562 * 28 27 26 45 45 H 1.08997 * 109.46976 * 305.58410 * 29 21 19 46 46 H 1.08998 * 109.47731 * 187.33069 * 30 29 21 47 47 H 1.08999 * 109.47203 * 67.32198 * 30 29 21 48 48 H 1.09005 * 109.46885 * 307.32805 * 30 29 21 49 49 H 1.09007 * 109.47293 * 299.99998 * 31 29 21 50 50 H 1.08999 * 109.47215 * 59.99856 * 31 29 21 51 51 H 1.09002 * 109.47434 * 180.02562 * 31 29 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 1 1.3351 2.0266 0.4609 5 6 2.3810 1.7381 -1.4342 6 7 3.6684 2.4440 -1.3581 7 6 4.3541 2.9703 -2.4201 8 1 5.2963 3.4730 -2.2591 9 6 3.8381 2.8576 -3.7039 10 7 2.6901 2.2445 -3.9003 11 14 4.7738 3.5748 -5.1528 12 1 5.6976 2.5499 -5.7018 13 1 3.8127 3.9900 -6.2061 14 1 5.5549 4.7549 -4.7025 15 6 4.0987 2.4919 0.0512 16 6 3.3816 1.2958 0.7257 17 1 3.9155 0.3640 0.5395 18 7 3.2167 1.5251 2.1631 19 6 4.1463 1.0739 3.0285 20 8 5.0857 0.4221 2.6240 21 6 4.0183 1.3791 4.4987 22 1 2.9976 1.1782 4.8240 23 6 4.9736 0.5116 5.2769 24 6 6.3391 0.5742 5.0449 25 6 7.1851 -0.2331 5.7815 26 7 6.7063 -1.0624 6.6880 27 6 5.4134 -1.1526 6.9314 28 6 4.5075 -0.3725 6.2379 29 6 4.3512 2.8521 4.7446 30 6 3.2987 3.7327 4.0682 31 6 4.3574 3.1293 6.2492 32 1 -0.3634 -1.0276 -0.0005 33 1 -0.3634 0.5138 0.8900 34 1 -0.3634 0.5139 -0.8900 35 1 2.4767 0.8603 -2.0731 36 1 1.6138 2.4031 -1.8308 37 1 2.3298 2.1655 -4.7974 38 1 3.7871 3.4295 0.5113 39 1 5.1801 2.3746 0.1219 40 1 2.4386 2.0018 2.4921 41 1 6.7370 1.2484 4.3008 42 1 8.2505 -0.1868 5.6102 43 1 5.0584 -1.8440 7.6813 44 1 3.4498 -0.4505 6.4420 45 1 5.3338 3.0766 4.3297 46 1 3.6039 4.7772 4.1310 47 1 2.3398 3.6034 4.5701 48 1 3.2025 3.4447 3.0212 49 1 3.3747 2.9048 6.6641 50 1 5.1072 2.5020 6.7312 51 1 4.5941 4.1788 6.4244 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213331250.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:11 Heat of formation + Delta-G solvation = -38.832579 kcal Electronic energy + Delta-G solvation = -31773.442870 eV Core-core repulsion = 27672.912183 eV Total energy + Delta-G solvation = -4100.530687 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.90810 -40.70612 -39.65267 -37.55544 -37.24945 -35.70928 -33.74823 -33.26692 -32.05988 -30.71333 -29.49112 -28.32633 -27.92003 -27.50061 -26.01817 -24.45068 -23.65754 -22.53372 -22.21673 -21.61546 -20.89775 -19.15702 -18.49171 -17.97395 -17.65265 -17.20230 -16.90288 -16.61618 -16.32637 -16.16209 -15.90327 -15.80932 -15.39640 -15.19249 -15.08267 -14.65790 -14.53978 -14.38948 -14.35947 -13.93728 -13.71385 -13.61714 -13.24281 -13.17036 -13.02441 -12.91816 -12.76509 -12.61688 -12.54679 -12.35551 -12.10490 -12.07196 -11.90696 -11.84257 -11.67002 -11.62580 -10.98562 -10.78462 -10.63326 -10.41429 -10.36314 -10.04641 -9.98842 -8.97462 -7.88557 -5.26555 0.26617 0.31317 1.44688 1.47322 1.55263 1.56911 2.02853 2.45590 2.76797 2.93401 3.30932 3.38493 3.50588 3.56477 3.64391 3.81739 3.87328 3.91359 3.96886 4.08691 4.14435 4.25699 4.28550 4.32625 4.40474 4.44515 4.46652 4.59139 4.64485 4.68560 4.75443 4.80564 4.85225 4.87340 4.93573 4.96015 5.00902 5.04584 5.09642 5.25691 5.32242 5.36320 5.36947 5.43524 5.45314 5.47837 5.65354 5.82967 6.12541 6.31440 6.50063 7.03685 7.07457 7.21721 7.68976 8.31168 9.20796 Molecular weight = 347.20amu Principal moments of inertia in cm(-1) A = 0.013514 B = 0.002799 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2071.479715 B =10000.285606 C =10518.895622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.399 6.399 3 C 0.077 3.923 4 H 0.099 0.901 5 C 0.174 3.826 6 N -0.621 5.621 7 C -0.246 4.246 8 H 0.083 0.917 9 C -0.062 4.062 10 N -0.948 5.948 11 Si 0.980 3.020 12 H -0.289 1.289 13 H -0.291 1.291 14 H -0.267 1.267 15 C 0.134 3.866 16 C 0.149 3.851 17 H 0.071 0.929 18 N -0.697 5.697 19 C 0.518 3.482 20 O -0.574 6.574 21 C -0.054 4.054 22 H 0.138 0.862 23 C -0.029 4.029 24 C -0.147 4.147 25 C 0.079 3.921 26 N -0.512 5.512 27 C 0.084 3.916 28 C -0.162 4.162 29 C -0.077 4.077 30 C -0.166 4.166 31 C -0.138 4.138 32 H 0.099 0.901 33 H 0.067 0.933 34 H 0.035 0.965 35 H 0.015 0.985 36 H 0.023 0.977 37 H 0.248 0.752 38 H 0.047 0.953 39 H 0.033 0.967 40 H 0.417 0.583 41 H 0.122 0.878 42 H 0.163 0.837 43 H 0.181 0.819 44 H 0.166 0.834 45 H 0.059 0.941 46 H 0.067 0.933 47 H 0.085 0.915 48 H 0.054 0.946 49 H 0.076 0.924 50 H 0.045 0.955 51 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.823 0.680 24.748 25.223 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.318 6.318 3 C 0.017 3.983 4 H 0.116 0.884 5 C 0.048 3.952 6 N -0.349 5.349 7 C -0.375 4.375 8 H 0.101 0.899 9 C -0.255 4.255 10 N -0.597 5.597 11 Si 0.808 3.192 12 H -0.216 1.216 13 H -0.217 1.217 14 H -0.191 1.191 15 C 0.007 3.993 16 C 0.042 3.958 17 H 0.090 0.910 18 N -0.351 5.351 19 C 0.306 3.694 20 O -0.452 6.452 21 C -0.075 4.075 22 H 0.156 0.844 23 C -0.038 4.038 24 C -0.167 4.167 25 C -0.077 4.077 26 N -0.221 5.221 27 C -0.073 4.073 28 C -0.181 4.181 29 C -0.096 4.096 30 C -0.223 4.223 31 C -0.195 4.195 32 H 0.117 0.883 33 H 0.086 0.914 34 H 0.053 0.947 35 H 0.033 0.967 36 H 0.041 0.959 37 H 0.058 0.942 38 H 0.064 0.936 39 H 0.051 0.949 40 H 0.257 0.743 41 H 0.140 0.860 42 H 0.180 0.820 43 H 0.198 0.802 44 H 0.184 0.816 45 H 0.077 0.923 46 H 0.086 0.914 47 H 0.104 0.896 48 H 0.073 0.927 49 H 0.095 0.905 50 H 0.064 0.936 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -3.500 -0.443 24.723 24.973 hybrid contribution -0.328 1.004 -2.055 2.311 sum -3.828 0.560 22.667 22.995 Atomic orbital electron populations 1.22996 0.79283 1.03868 1.00854 1.87903 1.21822 1.27135 1.94930 1.23510 0.93693 0.85227 0.95832 0.88357 1.21280 0.87218 0.94645 0.92008 1.44506 1.21949 1.66357 1.02065 1.19441 1.02699 1.29489 0.85881 0.89914 1.25663 0.98421 1.01454 0.99968 1.70157 1.20541 1.48327 1.20655 0.85066 0.77318 0.78102 0.78754 1.21625 1.21683 1.19134 1.21920 0.97072 0.95767 0.84550 1.21827 0.95587 0.98320 0.80095 0.91041 1.45943 1.25824 1.58331 1.04964 1.20988 0.81563 0.77777 0.89092 1.90737 1.33851 1.40357 1.80282 1.20502 1.01763 0.96740 0.88531 0.84403 1.19864 0.93694 0.95339 0.94863 1.21998 0.94473 1.00816 0.99381 1.22923 1.01127 0.91841 0.91795 1.67658 1.17293 1.19810 1.17373 1.23208 0.88075 0.97544 0.98480 1.22335 1.02855 0.96234 0.96679 1.21017 1.00098 0.90083 0.98372 1.22183 0.99368 1.00017 1.00724 1.21789 1.02853 1.01989 0.92861 0.88289 0.91438 0.94662 0.96713 0.95893 0.94228 0.93578 0.94889 0.74336 0.86023 0.81964 0.80226 0.81635 0.92278 0.91405 0.89568 0.92674 0.90474 0.93633 0.91528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.65 10.85 113.37 1.23 1.88 16 2 O -0.40 -14.16 10.43 -148.98 -1.55 -15.71 16 3 C 0.08 2.76 3.09 31.78 0.10 2.86 16 4 H 0.10 2.84 7.68 -2.39 -0.02 2.82 16 5 C 0.17 8.61 5.15 86.73 0.45 9.06 16 6 N -0.62 -32.23 3.39 -691.98 -2.35 -34.58 16 7 C -0.25 -13.98 10.28 84.03 0.86 -13.12 16 8 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 9 C -0.06 -3.53 5.49 84.86 0.47 -3.07 16 10 N -0.95 -57.01 10.31 21.65 0.22 -56.78 16 11 Si 0.98 46.04 29.55 68.60 2.03 48.07 16 12 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 13 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 14 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 15 C 0.13 5.54 6.93 86.86 0.60 6.14 16 16 C 0.15 5.37 3.18 46.39 0.15 5.52 16 17 H 0.07 3.15 7.49 -2.39 -0.02 3.13 16 18 N -0.70 -17.72 3.95 -435.97 -1.72 -19.44 16 19 C 0.52 13.89 6.79 87.66 0.60 14.48 16 20 O -0.57 -21.24 14.37 -3.03 -0.04 -21.28 16 21 C -0.05 -0.94 2.02 -12.29 -0.02 -0.96 16 22 H 0.14 1.45 7.95 -2.39 -0.02 1.43 16 23 C -0.03 -0.59 3.03 -19.67 -0.06 -0.65 16 24 C -0.15 -3.52 7.99 22.36 0.18 -3.34 16 25 C 0.08 1.86 11.18 84.68 0.95 2.80 16 26 N -0.51 -12.19 10.36 -195.84 -2.03 -14.22 16 27 C 0.08 1.54 11.18 84.68 0.95 2.48 16 28 C -0.16 -2.64 9.76 22.36 0.22 -2.42 16 29 C -0.08 -1.13 2.26 -10.79 -0.02 -1.15 16 30 C -0.17 -2.05 8.70 71.98 0.63 -1.43 16 31 C -0.14 -1.55 8.86 71.98 0.64 -0.92 16 32 H 0.10 2.11 8.14 -2.39 -0.02 2.09 16 33 H 0.07 1.26 8.11 -2.39 -0.02 1.24 16 34 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.01 0.85 7.29 -2.39 -0.02 0.83 16 36 H 0.02 1.23 7.51 -2.39 -0.02 1.21 16 37 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 38 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 39 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.42 7.42 6.69 -92.71 -0.62 6.80 16 41 H 0.12 3.14 7.41 -2.91 -0.02 3.12 16 42 H 0.16 3.21 8.06 -2.91 -0.02 3.19 16 43 H 0.18 2.11 8.06 -2.91 -0.02 2.09 16 44 H 0.17 1.50 8.01 -2.91 -0.02 1.48 16 45 H 0.06 1.12 7.70 -2.39 -0.02 1.11 16 46 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 48 H 0.05 0.87 4.92 -2.38 -0.01 0.86 16 49 H 0.08 0.59 8.14 -2.38 -0.02 0.58 16 50 H 0.04 0.63 7.03 -2.39 -0.02 0.62 16 51 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -78.34 405.60 2.75 -75.59 By element: Atomic # 1 Polarization: 19.89 SS G_CDS: 0.30 Total: 20.19 kcal Atomic # 6 Polarization: 10.28 SS G_CDS: 7.89 Total: 18.18 kcal Atomic # 7 Polarization: -119.15 SS G_CDS: -5.88 Total: -125.03 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -1.60 Total: -36.99 kcal Atomic # 14 Polarization: 46.04 SS G_CDS: 2.03 Total: 48.07 kcal Total: -78.34 2.75 -75.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213331250.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.756 kcal (2) G-P(sol) polarization free energy of solvation -78.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.588 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds